Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:RNA polymerase II cis-regulatory region sequence-specific DNA binding, bending
go back to main search page
Accession:GO:0044377 term browser browse the term
Definition:Binding to a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase II, and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence.
Synonyms:related_synonym: RNA polymerase II core promoter proximal region sequence-specific DNA binding, bending;   RNA polymerase II promoter proximal region sequence-specific DNA binding, bending;   RNA polymerase II proximal promoter sequence-specific DNA binding, bending



show annotations for term's descendants           Sort by:
RNA polymerase II cis-regulatory region sequence-specific DNA binding, bending term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CEBPG CCAAT enhancer binding protein gamma ISO RGD PMID:1377818 RGD:69946 NCBI chr 1:118,777,110...118,784,397
Ensembl chr 1:118,778,224...118,778,667
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 21951
    binding 19825
      nucleic acid binding 6711
        DNA binding 2232
          DNA binding, bending 18
            sequence-specific DNA binding, bending 1
              RNA polymerase II cis-regulatory region sequence-specific DNA binding, bending 1
Path 2
Term Annotations click to browse term
  molecular_function 21951
    binding 19825
      nucleic acid binding 6711
        DNA binding 2232
          double-stranded DNA binding 1445
            sequence-specific double-stranded DNA binding 1353
              transcription cis-regulatory region binding 1272
                cis-regulatory region sequence-specific DNA binding 1029
                  RNA polymerase II cis-regulatory region sequence-specific DNA binding 998
                    RNA polymerase II cis-regulatory region sequence-specific DNA binding, bending 1
paths to the root