Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:RNA polymerase II cis-regulatory region sequence-specific DNA binding, bending
go back to main search page
Accession:GO:0044377 term browser browse the term
Definition:Binding to a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase II, and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence.
Synonyms:related_synonym: RNA polymerase II core promoter proximal region sequence-specific DNA binding, bending;   RNA polymerase II promoter proximal region sequence-specific DNA binding, bending;   RNA polymerase II proximal promoter sequence-specific DNA binding, bending


show annotations for term's descendants           Sort by:
RNA polymerase II cis-regulatory region sequence-specific DNA binding, bending term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cebpg CCAAT/enhancer binding protein gamma IDA RGD PMID:1377818 RGD:69946 NCBI chr 1:87,683,060...87,692,772
Ensembl chr 1:87,684,019...87,694,569 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 21102
    binding 18100
      nucleic acid binding 3928
        DNA binding 2338
          DNA binding, bending 50
            sequence-specific DNA binding, bending 1
              RNA polymerase II cis-regulatory region sequence-specific DNA binding, bending 1
Path 2
Term Annotations click to browse term
  molecular_function 21102
    binding 18100
      nucleic acid binding 3928
        DNA binding 2338
          double-stranded DNA binding 1518
            sequence-specific double-stranded DNA binding 1418
              transcription cis-regulatory region binding 1346
                cis-regulatory region sequence-specific DNA binding 1069
                  RNA polymerase II cis-regulatory region sequence-specific DNA binding 1038
                    RNA polymerase II cis-regulatory region sequence-specific DNA binding, bending 1
paths to the root