Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of biological process involved in symbiotic interaction
go back to main search page
Accession:GO:0043903 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of symbiosis, an interaction between two organisms living together in more or less intimate association.
Comment:regulation of interspecies interactions between organisms
Synonyms:exact_synonym: regulation of symbiotic process
 broad_synonym: regulation of interspecies interactions between organisms
 related_synonym: regulation of symbiosis, encompassing mutualism through parasitism


show annotations for term's descendants           Sort by:
negative regulation of entry of bacterium into host cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Itgav integrin subunit alpha V involved_in ISO (PMID:10570297) RGD PMID:10570297 NCBI chr 3:68,838,514...68,926,653
Ensembl chr 3:68,838,189...68,926,639 		JBrowse link
negative regulation of fusion of virus membrane with host plasma membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ch25h cholesterol 25-hydroxylase involved_in ISO
ISS		 (PMID:32944968), (PMID:33239446)
GO_REF:0000024		 RGD
UniProt		 PMID:32944968 PMID:33239446 GO_REF:0000024 NCBI chr 1:232,014,877...232,016,195
Ensembl chr 1:232,014,880...232,016,195 		JBrowse link
negative regulation of intracellular transport of viral material term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bst2 bone marrow stromal cell antigen 2 involved_in ISO
ISS		 (PMID:19036818), (PMID:20686043), (PMID:20943977)
(PMID:20686043), (PMID:21919738), (PMID:22284121)
GO_REF:0000024		 RGD
UniProt		 PMID:19036818 PMID:20686043 PMID:20943977 PMID:21919738 PMID:22284121 GO_REF:0000024 NCBI chr16:18,216,605...18,220,979
Ensembl chr16:18,217,407...18,220,979 		JBrowse link
G Mx2 MX dynamin like GTPase 2 involved_in ISO (PMID:20167191) RGD PMID:20167191 NCBI chr11:36,905,698...36,936,308
Ensembl chr11:36,906,111...36,930,342 		JBrowse link
G Trim15 tripartite motif containing 15 involved_in ISO (PMID:18248090) RGD PMID:18248090 NCBI chr20:1,700,905...1,710,249
Ensembl chr20:1,700,905...1,710,249 		JBrowse link
negative regulation of single-species biofilm formation in or on host organism term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bpifa1 BPI fold containing family A, member 1 involved_in ISS
ISO
IBA		 GO_REF:0000024
(PMID:23499554)
GO_REF:0000033		 UniProt
RGD
GO_Central		 PMID:23499554 GO_REF:0000024 GO_REF:0000033 NCBI chr 3:142,627,810...142,633,553
Ensembl chr 3:142,627,810...142,633,552 		JBrowse link
G Bpifa5 BPI fold containing family A, member 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:142,646,103...142,652,884
Ensembl chr 3:142,646,103...142,652,883 		JBrowse link
G Ltf lactotransferrin involved_in ISO (PMID:12037568) RGD PMID:12037568 NCBI chr 8:110,999,948...111,022,795
Ensembl chr 8:110,999,948...111,022,795 		JBrowse link
positive regulation of intracellular transport of viral material term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fmr1 fragile X messenger ribonucleoprotein 1 involved_in ISO (PMID:24514761) RGD PMID:24514761 NCBI chr  X:147,240,239...147,278,057
Ensembl chr  X:147,240,301...147,278,050 		JBrowse link
positive regulation of neutrophil mediated killing of fungus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arg1 arginase 1 involved_in ISO
IEA		 (PMID:15546957)
GO_REF:0000107		 RGD
Ensembl		 PMID:15546957 GO_REF:0000107 NCBI chr 1:20,475,878...20,488,422
Ensembl chr 1:20,475,968...20,488,422 		JBrowse link
G Cxcl1 C-X-C motif chemokine ligand 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:10725737)		 Ensembl
RGD		 PMID:10725737 GO_REF:0000107 NCBI chr14:17,193,364...17,195,143
Ensembl chr14:17,193,365...17,195,215 		JBrowse link
G Pomc proopiomelanocortin involved_in ISO (PMID:10670585) RGD PMID:10670585 NCBI chr 6:26,939,844...26,945,666
Ensembl chr 6:26,939,837...26,945,664 		JBrowse link
positive regulation of neutrophil mediated killing of gram-negative bacterium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G F2rl1 F2R like trypsin receptor 1 involved_in ISO (PMID:21501162) RGD PMID:21501162 NCBI chr 2:26,772,274...26,785,226
Ensembl chr 2:26,772,278...26,785,226 		JBrowse link
positive regulation of viral entry into host cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bsg basigin involved_in ISO (PMID:11353871), (PMID:15688292), (PMID:29739904) RGD PMID:11353871 PMID:15688292 PMID:29739904 NCBI chr 7:9,993,170...10,000,387
Ensembl chr 7:9,993,170...10,000,387 		JBrowse link
G Cd4 Cd4 molecule involved_in ISO
IEA		 (PMID:24942581)
GO_REF:0000107		 RGD
Ensembl		 PMID:24942581 GO_REF:0000107 NCBI chr 4:157,668,878...157,695,366
Ensembl chr 4:157,668,878...157,695,191 		JBrowse link
G Cd74 CD74 molecule involved_in ISO
IEA		 (PMID:24942581)
GO_REF:0000107		 RGD
Ensembl		 PMID:24942581 GO_REF:0000107 NCBI chr18:54,256,757...54,266,003
Ensembl chr18:54,256,778...54,266,003 		JBrowse link
G Furin furin (paired basic amino acid cleaving enzyme) involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:134,348,142...134,361,182
Ensembl chr 1:134,348,144...134,364,314 		JBrowse link
G Lgals1 galectin 1 involved_in ISO
IEA		 (PMID:21670307)
GO_REF:0000107		 RGD
Ensembl		 PMID:21670307 GO_REF:0000107 NCBI chr 7:110,485,239...110,488,345
Ensembl chr 7:110,481,392...110,488,345 		JBrowse link
G Lgals9 galectin 9 involved_in ISO (PMID:21670307) RGD PMID:21670307 NCBI chr10:63,907,018...63,930,224
Ensembl chr10:63,907,018...63,930,045 		JBrowse link
G Nectin1 nectin cell adhesion molecule 1 involved_in ISO (PMID:11277703) RGD PMID:11277703 NCBI chr 8:44,101,776...44,164,863
Ensembl chr 8:44,101,776...44,189,787 		JBrowse link
G P4hb prolyl 4-hydroxylase subunit beta involved_in ISO (PMID:21670307) RGD PMID:21670307 NCBI chr10:105,836,972...105,848,583
Ensembl chr10:105,836,982...105,848,500 		JBrowse link
G RT1-Db1 RT1 class II, locus Db1 involved_in ISO (PMID:24942581) RGD PMID:24942581 NCBI chr20:4,548,664...4,558,237
Ensembl chr20:4,548,666...4,558,258 		JBrowse link
G Smpd1 sphingomyelin phosphodiesterase 1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:159,892,946...159,896,789
Ensembl chr 1:159,892,859...159,896,794 		JBrowse link
G Tmprss2 transmembrane serine protease 2 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr11:36,934,306...36,973,779
Ensembl chr11:36,934,306...36,973,715 		JBrowse link
G Tmprss4 transmembrane serine protease 4 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 8:45,475,819...45,508,409
Ensembl chr 8:45,476,053...45,508,409 		JBrowse link
G Trim11 tripartite motif-containing 11 involved_in ISO (PMID:18248090) RGD PMID:18248090 NCBI chr10:43,758,299...43,771,138
Ensembl chr10:43,758,354...43,771,138 		JBrowse link
G Trim21 tripartite motif-containing 21 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:156,964,896...156,987,504
Ensembl chr 1:156,964,913...156,987,440 		JBrowse link
G Trim38 tripartite motif containing 38 involved_in ISO (PMID:18248090) RGD PMID:18248090 NCBI chr17:41,351,857...41,365,021 JBrowse link
regulation of entry of bacterium into host cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cav1 caveolin 1 involved_in ISO
IEA		 (PMID:24625804)
GO_REF:0000107		 RGD
Ensembl		 PMID:24625804 GO_REF:0000107 NCBI chr 4:45,640,624...45,673,708
Ensembl chr 4:45,634,918...45,673,705 		JBrowse link
G Exoc2 exocyst complex component 2 involved_in ISO
IEA		 (PMID:20579884)
GO_REF:0000107		 RGD
Ensembl		 PMID:20579884 GO_REF:0000107 NCBI chr17:33,506,289...33,698,246
Ensembl chr17:33,506,338...33,693,289 		JBrowse link
G Exoc7 exocyst complex component 7 involved_in ISO
IEA		 (PMID:20579884)
GO_REF:0000107		 RGD
Ensembl		 PMID:20579884 GO_REF:0000107 NCBI chr10:101,521,630...101,540,425
Ensembl chr10:101,520,927...101,540,561 		JBrowse link
G Fuca2 alpha-L-fucosidase 2 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:7,885,986...7,900,777
Ensembl chr 1:7,885,918...7,900,776 		JBrowse link
regulation of neutrophil mediated killing of gram-negative bacterium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cxcl6 C-X-C motif chemokine ligand 6 acts_upstream_of_or_within ISO MGI:4819800 (PMID:20643340) RGD PMID:20643340 NCBI chr14:17,310,790...17,312,250
Ensembl chr14:17,310,426...17,313,093 		JBrowse link
regulation of viral entry into host cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hs3st5 heparan sulfate-glucosamine 3-sulfotransferase 5 involved_in ISO (PMID:12138164) RGD PMID:12138164 NCBI chr20:40,106,876...40,417,661
Ensembl chr20:40,106,876...40,417,653 		JBrowse link
G Nectin2 nectin cell adhesion molecule 2 involved_in ISO (PMID:11602758) RGD PMID:11602758 NCBI chr 1:79,372,123...79,407,379
Ensembl chr 1:79,372,119...79,407,360 		JBrowse link
G Trim25 tripartite motif-containing 25 involved_in ISO (PMID:18248090) RGD PMID:18248090 NCBI chr10:73,812,818...73,831,271
Ensembl chr10:73,812,818...73,831,257 		JBrowse link
G Trim30c tripartite motif-containing 30C involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:158,766,401...158,787,915
Ensembl chr 1:158,765,969...158,787,183 		JBrowse link
G Trim30d tripartite motif-containing 30D involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:158,795,288...158,813,913
Ensembl chr 1:158,720,410...158,814,012 		JBrowse link
G Trim5 tripartite motif-containing 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:158,720,407...158,737,393
Ensembl chr 1:158,720,410...158,814,012 		JBrowse link
G Trim62 tripartite motif-containing 62 involved_in ISO (PMID:18248090) RGD PMID:18248090 NCBI chr 5:141,230,830...141,260,629
Ensembl chr 5:141,231,523...141,259,915 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    regulation of biological process 13374
      regulation of biological process involved in symbiotic interaction 40
        modulation by symbiont of entry into host + 28
        positive regulation of transepithelial migration of symbiont in host 0
        regulation of formation by symbiont of haustorium for nutrient acquisition from host + 0
        regulation of intracellular transport of viral material + 4
        regulation of neutrophil mediated killing of symbiont cell + 5
        regulation of receptor-mediated virion attachment to host cell + 0
        regulation of single-species biofilm formation in or on host organism + 3
        regulation of transformation of host cell by virus + 0
Path 2
Term Annotations click to browse term
  biological_process 20536
    biological process involved in interspecies interaction between organisms 1993
      biological process involved in symbiotic interaction 165
        regulation of biological process involved in symbiotic interaction 40
          modulation by symbiont of entry into host + 28
          positive regulation of transepithelial migration of symbiont in host 0
          regulation of formation by symbiont of haustorium for nutrient acquisition from host + 0
          regulation of intracellular transport of viral material + 4
          regulation of neutrophil mediated killing of symbiont cell + 5
          regulation of receptor-mediated virion attachment to host cell + 0
          regulation of single-species biofilm formation in or on host organism + 3
          regulation of transformation of host cell by virus + 0
paths to the root