sequence-specific DNA binding - Ontology Report

(PMID:1605850)

PMID:1605850

NCBI chr 6:52,234,089...52,271,568
Ensembl chr 6:52,234,089...52,271,568

Alx1

ALX homeobox 1

enables

(PMID:9847249)

PMID:9847249

NCBI chr 7:38,157,626...38,177,220
Ensembl chr 7:38,147,117...38,177,220

Alx4

ALX homeobox 4

enables

(PMID:9786416)

PMID:9786416

NCBI chr 3:79,611,682...79,648,260
Ensembl chr 3:79,611,719...79,648,260

androgen receptor

enables

(PMID:8119157)

PMID:8119157 PMID:10385402

RGD:10043317

NCBI chr X:63,104,771...63,273,934
Ensembl chr X:63,104,771...63,273,925

Arid5a

AT-rich interaction domain 5A

enables

(PMID:15640446)

PMID:15640446

NCBI chr 9:38,534,612...38,549,467
Ensembl chr 9:38,534,590...38,547,597

Arnt

aryl hydrocarbon receptor nuclear translocator

contributes_to
enables

(PMID:26245371)
(PMID:7539918)

PMID:7539918 PMID:26245371 PMID:11029639

RGD:2301215

NCBI chr 2:182,997,731...183,056,584
Ensembl chr 2:182,997,736...183,056,580

Ascl1

achaete-scute family bHLH transcription factor 1

enables

(PMID:17141158)

PMID:17141158

NCBI chr 7:21,903,136...21,906,003
Ensembl chr 7:21,903,126...21,905,993

Ascl2

achaete-scute family bHLH transcription factor 2

enables

(PMID:9676199)

PMID:9676199

NCBI chr 1:198,148,999...198,151,406
Ensembl chr 1:198,148,999...198,151,406

Atf1

activating transcription factor 1

RGD

PMID:15084519

RGD:2312278

NCBI chr 7:131,361,962...131,404,677
Ensembl chr 7:131,362,450...131,404,670

Atf2

activating transcription factor 2

enables

(PMID:15916964)

PMID:15916964 PMID:17428807

RGD:2290488

NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236

Atf4

activating transcription factor 4

enables

(PMID:22915762)

PMID:22915762

NCBI chr 7:111,804,135...111,806,457
Ensembl chr 7:111,804,183...111,806,446

Atf5

activating transcription factor 5

enables

PMID:19531563
(PMID:24216764)

PMID:24216764 PMID:19531563

RGD:10400874

NCBI chr 1:95,295,602...95,299,755
Ensembl chr 1:95,295,610...95,299,707

Atf6

activating transcription factor 6

enables

(PMID:28473536)

NCBI chr13:82,927,579...83,106,381
Ensembl chr13:82,930,034...83,107,177

Atoh1

atonal bHLH transcription factor 1

enables

(PMID:16679559)

PMID:16679559

NCBI chr 4:93,912,068...93,914,163
Ensembl chr 4:93,912,068...93,914,154

Barx2

BARX homeobox 2

enables

(PMID:15800003)

PMID:15800003

NCBI chr 8:30,251,132...30,319,105
Ensembl chr 8:30,251,132...30,319,013

Batf

basic leucine zipper ATF-like transcription factor

enables

GO_REF:0000024
(PMID:19578362), (PMID:21572431), (PMID:22983707), (PMID:22992523), (PMID:22992524)

PMID:19578362 PMID:21572431 PMID:22983707 PMID:22992523 PMID:22992524

GO_REF:0000024

NCBI chr 6:105,353,715...105,376,051
Ensembl chr 6:105,353,715...105,376,051

Bcl11b

BCL11 transcription factor B

enables

(PMID:16809611)

PMID:16809611

NCBI chr 6:126,834,531...126,927,720
Ensembl chr 6:126,834,531...126,928,224

Bcl2

BCL2, apoptosis regulator

enables

(PMID:12086670)
GO_REF:0000107

PMID:12086670

GO_REF:0000107

NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743

Bcl6

BCL6, transcription repressor

enables

(PMID:15577913)
(PMID:15659391)

PMID:15577913 PMID:15659391

NCBI chr11:76,854,090...76,877,389
Ensembl chr11:76,854,090...76,877,389

Bmal1

basic helix-loop-helix ARNT like 1

enables

GO_REF:0000024
(PMID:21613214)

PMID:21613214

GO_REF:0000024

NCBI chr 1:167,331,756...167,430,235
Ensembl chr 1:167,331,633...167,430,231

Bptf

bromodomain PHD finger transcription factor

enables

(PMID:10403843), (PMID:10575013)

PMID:10403843 PMID:10575013

NCBI chr10:91,980,279...92,082,731
Ensembl chr10:91,982,758...92,082,769

Bsx

brain specific homeobox

enables

(PMID:17550780)

PMID:17550780

NCBI chr 8:41,254,105...41,257,861
Ensembl chr 8:41,254,105...41,257,861

Calcoco1

calcium binding and coiled coil domain 1

enables

(PMID:16344550)

PMID:16344550

NCBI chr 7:133,834,705...133,849,515
Ensembl chr 7:133,834,707...133,849,422

Camta1

calmodulin binding transcription activator 1

enables

(PMID:25049392)

PMID:25049392

NCBI chr 5:161,510,283...162,356,902
Ensembl chr 5:161,510,283...162,356,723

Camta2

calmodulin binding transcription activator 2

enables

(PMID:25049392)

PMID:25049392

NCBI chr10:55,383,450...55,401,838
Ensembl chr10:55,383,450...55,401,558

Cbfb

core-binding factor subunit beta

contributes_to

GO_REF:0000033
(PMID:18258917)

PMID:18258917

GO_REF:0000033

NCBI chr19:33,049,162...33,092,752
Ensembl chr19:33,049,172...33,092,751

Cdx2

caudal type homeo box 2

enables

(PMID:19796622)

PMID:19796622

NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142

Cebpa

CCAAT/enhancer binding protein alpha

contributes_to
enables

PMID:8657121
(PMID:11672531)
PMID:20176812

PMID:11672531 PMID:8657121 PMID:20176812

RGD:1599740, RGD:10047378

NCBI chr 1:87,759,631...87,762,303
Ensembl chr 1:87,759,433...87,762,412

Cebpb

CCAAT/enhancer binding protein beta

enables

(PMID:10588870), (PMID:15659391), (PMID:24216764)

PMID:10588870 PMID:15659391 PMID:24216764 PMID:14661739

RGD:2303385

NCBI chr 3:156,398,035...156,399,466
Ensembl chr 3:156,397,052...156,399,473

Cebpd

CCAAT/enhancer binding protein delta

RGD

PMID:11792653

RGD:625506

NCBI chr11:84,764,670...84,765,808
Ensembl chr11:84,764,565...84,765,829

Cebpg

CCAAT/enhancer binding protein gamma

enables

(PMID:7665092)
GO_REF:0000024

PMID:7665092

GO_REF:0000024

NCBI chr 1:87,683,060...87,692,772
Ensembl chr 1:87,684,019...87,694,569

Chchd2

coiled-coil-helix-coiled-coil-helix domain containing 2

enables

(PMID:23303788)

PMID:23303788

NCBI chr12:26,828,738...26,834,762
Ensembl chr12:26,828,736...26,834,755

Clock

clock circadian regulator

enables

GO_REF:0000024
(PMID:21613214)

PMID:21613214

GO_REF:0000024

NCBI chr14:31,908,542...31,992,673
Ensembl chr14:31,908,566...31,990,400

Creb1

cAMP responsive element binding protein 1

enables

(PMID:15030764)

PMID:15030764 PMID:16959941 PMID:16891311 PMID:15632413 PMID:12697699

RGD:1599906, RGD:1625706, RGD:1643534, RGD:1624302

NCBI chr 9:65,903,511...65,972,562
Ensembl chr 9:65,903,547...65,970,816

Creb3

cAMP responsive element binding protein 3

enables

(PMID:8112612)

PMID:8112612

NCBI chr 5:57,817,865...57,823,233
Ensembl chr 5:57,817,832...57,824,390

Crebzf

CREB/ATF bZIP transcription factor

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr 1:144,416,864...144,423,540
Ensembl chr 1:144,417,446...144,428,553

Csrnp1

cysteine and serine rich nuclear protein 1

enables

GO_REF:0000033
(PMID:17726538)

PMID:17726538

GO_REF:0000033

NCBI chr 8:119,704,712...119,717,767
Ensembl chr 8:119,704,713...119,718,183

Csrnp2

cysteine and serine rich nuclear protein 2

enables

GO_REF:0000033
(PMID:17726538)

PMID:17726538

GO_REF:0000033

NCBI chr 7:131,594,232...131,610,075
Ensembl chr 7:131,594,232...131,610,075

Csrnp3

cysteine and serine rich nuclear protein 3

enables

GO_REF:0000033
(PMID:17726538)

PMID:17726538

GO_REF:0000033

NCBI chr 3:50,498,379...50,695,598
Ensembl chr 3:50,498,633...50,685,950

Ctcf

CCCTC-binding factor

enables

(PMID:17827499)
(PMID:11743158), (PMID:12075007)

PMID:11743158 PMID:12075007 PMID:17827499

NCBI chr19:33,521,726...33,571,124
Ensembl chr19:33,529,319...33,571,123

Ctcfl1

CCCTC-binding factor like 1

enables

(PMID:18765639)
(PMID:17048991)

PMID:17048991 PMID:18765639

NCBI chr 3:161,868,306...161,890,949
Ensembl chr 3:161,868,306...161,890,949

Cux1

cut-like homeobox 1

enables

(PMID:15656993)
(PMID:1363085)

PMID:1363085 PMID:15656993

NCBI chr12:20,107,062...20,425,868
Ensembl chr12:20,107,311...20,425,866

Cux2

cut-like homeobox 2

enables

(PMID:15656993)

PMID:15656993

NCBI chr12:34,507,723...34,707,581
Ensembl chr12:34,520,959...34,705,806

Cxxc5

CXXC finger protein 5

enables

GO_REF:0000024
(PMID:23303788)

PMID:23303788

GO_REF:0000024

NCBI chr18:27,427,591...27,458,579
Ensembl chr18:27,427,230...27,458,673

Ddit3

DNA-damage inducible transcript 3

contributes_to

PMID:8657121

ParkinsonsUK-UCL

PMID:8657121

RGD:1599740

NCBI chr 7:63,115,645...63,121,203
Ensembl chr 7:63,116,380...63,121,201

Dlx4

distal-less homeobox 4

enables

(PMID:9073066)

PMID:9073066

NCBI chr10:80,085,037...80,090,434
Ensembl chr10:80,085,465...80,090,456

Dmbx1

diencephalon/mesencephalon homeobox 1

enables

(PMID:15890343)

PMID:15890343

NCBI chr 5:129,394,221...129,403,040
Ensembl chr 5:129,394,221...129,403,040

Dmrt1

doublesex and mab-3 related transcription factor 1

enables

(PMID:17605809)

NCBI chr 1:223,142,859...223,241,333
Ensembl chr 1:223,142,859...223,241,333

Dmrt2

doublesex and mab-3 related transcription factor 2

enables

(PMID:17605809)

NCBI chr 1:223,317,543...223,324,131
Ensembl chr 1:223,317,642...223,324,131

Dmrt3

doublesex and mab-3 related transcription factor 3

enables

(PMID:17605809)

NCBI chr 1:223,244,340...223,264,254
Ensembl chr 1:223,248,747...223,262,530

Dmrta1

DMRT-like family A1

enables

(PMID:17605809)

NCBI chr 5:104,415,893...104,422,433
Ensembl chr 5:104,415,893...104,422,433

Dmrta2

DMRT-like family A2

enables

(PMID:17605809)

NCBI chr 5:124,805,883...124,811,694
Ensembl chr 5:124,805,883...124,811,630

Dmrtb1

DMRT-like family B with proline-rich C-terminal, 1

NOT|enables

(PMID:17605809)

NCBI chr 5:122,444,853...122,452,483
Ensembl chr 5:122,444,841...122,452,396

Dmrtc2

DMRT-like family C2

enables

(PMID:17605809)

NCBI chr 1:80,466,259...80,473,883
Ensembl chr 1:80,466,132...80,473,531

E2f1

E2F transcription factor 1

enables

(PMID:11672531)
(PMID:23332764)

PMID:11672531 PMID:23332764 PMID:18096822

RGD:2316264

NCBI chr 3:143,064,535...143,075,362
Ensembl chr 3:143,049,478...143,075,361

E2f2

E2F transcription factor 2

enables

(PMID:23332764)

NCBI chr 5:148,399,193...148,422,595
Ensembl chr 5:148,399,642...148,421,217

E2f3

E2F transcription factor 3

enables

(PMID:23332764)

NCBI chr17:34,601,756...34,679,139
Ensembl chr17:34,601,830...34,676,253

E2f5

E2F transcription factor 5

RGD

PMID:12063292

RGD:625751

NCBI chr 2:86,997,331...87,012,908
Ensembl chr 2:86,997,332...87,012,990

E2f6

E2F transcription factor 6

enables

(PMID:18667754)

PMID:18667754

NCBI chr 6:39,592,224...39,608,685
Ensembl chr 6:39,592,228...39,608,683

Egr1

early growth response 1

enables

(PMID:1662794), (PMID:25258363)

PMID:1662794 PMID:25258363 PMID:10837920

RGD:1626488

NCBI chr18:26,462,967...26,466,766
Ensembl chr18:26,462,981...26,466,766

Egr2

early growth response 2

enables

(PMID:17717711)
(PMID:11823429), (PMID:8093858)
GO_REF:0000024

PMID:8093858 PMID:11823429 PMID:17717711

GO_REF:0000024

NCBI chr20:21,051,270...21,056,322
Ensembl chr20:21,051,277...21,055,562

Egr3

early growth response 3

enables

(PMID:23332764)

NCBI chr15:45,150,335...45,156,052
Ensembl chr15:45,150,567...45,154,627

Egr4

early growth response 4

enables

(PMID:23332764)

NCBI chr 4:118,047,869...118,050,328
Ensembl chr 4:118,047,869...118,050,328

Elf2

E74 like ETS transcription factor 2

enables

(PMID:14970218)

PMID:14970218

NCBI chr 2:135,292,291...135,385,942
Ensembl chr 2:135,294,906...135,385,947

Eomes

eomesodermin

enables

(PMID:20713518)

PMID:20713518

NCBI chr 8:118,181,340...118,189,186
Ensembl chr 8:118,181,777...118,188,316

Epas1

endothelial PAS domain protein 1

contributes_to
enables

(PMID:26245371)
(PMID:9079689)

PMID:9079689 PMID:26245371 PMID:12675925

RGD:632652

NCBI chr 6:7,790,236...7,871,717
Ensembl chr 6:7,790,647...7,871,228

Ercc6

ERCC excision repair 6, chromatin remodeling factor

enables

(PMID:22483866)

PMID:22483866

NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587

Erf

Ets2 repressor factor

enables

(PMID:23332764)

NCBI chr 1:80,829,935...80,838,388
Ensembl chr 1:80,829,935...80,838,388

Erfl

ETS repressor factor like

enables

GO_REF:0000002

GO_REF:0000002

NCBI chr 1:80,521,378...80,526,262
Ensembl chr 1:80,521,854...80,526,262

Esr1

estrogen receptor 1

enables

GO_REF:0000002
(PMID:9448000)

InterPro
RGD

PMID:9448000

GO_REF:0000002

NCBI chr 1:41,106,335...41,499,104
Ensembl chr 1:41,210,475...41,495,002

Esr2

estrogen receptor 2

enables

PMID:23836911 PMID:20215575

GO_REF:0000002

InterPro
RGD

PMID:12200235

GO_REF:0000002, RGD:1582280

NCBI chr 6:94,858,438...94,909,630
Ensembl chr 6:94,809,547...94,908,919

Esrra

estrogen related receptor, alpha

enables

IDA
IEA
ISO
ISS

GO_REF:0000002
(PMID:23836911)
GO_REF:0000024

InterPro
RGD
UniProt

GO_REF:0000002 GO_REF:0000024, RGD:10401858

NCBI chr 1:204,104,100...204,114,182
Ensembl chr 1:204,104,101...204,114,268

Esrrb

estrogen-related receptor beta

enables

PMID:12654265 PMID:23169531 PMID:27601327

GO_REF:0000024
(PMID:23169531), (PMID:27601327)
GO_REF:0000002
(PMID:12654265)

UniProt
RGD
InterPro

GO_REF:0000002 GO_REF:0000024

NCBI chr 6:106,007,701...106,163,136
Ensembl chr 6:106,008,095...106,160,791

Esrrg

estrogen-related receptor gamma

enables

GO_REF:0000002

GO_REF:0000002

NCBI chr13:99,167,656...99,788,016
Ensembl chr13:99,564,669...99,783,397

Esx1

ESX homeobox 1

enables

(PMID:15897875)

PMID:15897875

NCBI chr X:100,449,298...100,454,452

Ets1

ETS proto-oncogene 1, transcription factor

enables

IDA
ISO
IEA

(PMID:1409581)
GO_REF:0000002

PMID:1409581 PMID:8635216

GO_REF:0000002, RGD:2313682

NCBI chr 8:31,045,909...31,168,010
Ensembl chr 8:31,045,945...31,168,010

Ets2

ETS proto-oncogene 2, transcription factor

enables

(PMID:1409581)

PMID:1409581

NCBI chr11:35,021,536...35,038,322
Ensembl chr11:35,021,596...35,038,319

Etv3l

ETS variant transcription factor 3 like

enables

GO_REF:0000002

GO_REF:0000002

NCBI chr 2:172,991,616...173,004,424
Ensembl chr 2:172,991,833...173,004,436

Ezh2

enhancer of zeste 2 polycomb repressive complex 2 subunit

enables

(PMID:20956546)

PMID:20956546

NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362

Fezf1

Fez family zinc finger 1

enables

(PMID:28245922)

PMID:28245922

NCBI chr 4:51,762,751...51,766,078
Ensembl chr 4:51,762,751...51,766,078

Fezf2

Fez family zinc finger 2

enables

(PMID:28245922)

PMID:28245922

NCBI chr15:12,768,614...12,777,554
Ensembl chr15:12,773,762...12,777,554

Fli1

Fli-1 proto-oncogene, ETS transcription factor

enables

(PMID:21867929)

PMID:21867929

NCBI chr 8:30,831,422...30,950,468
Ensembl chr 8:30,832,753...30,950,433

Fos

Fos proto-oncogene, AP-1 transcription factor subunit

RGD

PMID:10830307

RGD:1626699

NCBI chr 6:105,121,170...105,124,036
Ensembl chr 6:105,121,170...105,124,036

Fosb

FosB proto-oncogene, AP-1 transcription factor subunit

RGD

PMID:10830307

RGD:1626699

NCBI chr 1:78,954,312...78,961,492
Ensembl chr 1:78,954,115...78,961,465

Fosl2

FOS like 2, AP-1 transcription factor subunit

RGD

PMID:10830307

RGD:1626699

NCBI chr 6:24,297,898...24,319,219
Ensembl chr 6:24,300,956...24,320,034

Foxa1

forkhead box A1

enables

IDA
IEA
ISO

GO_REF:0000117
(PMID:22737085), (PMID:8306889)

PMID:8306889 PMID:22737085 PMID:2227418

GO_REF:0000117, RGD:632942

NCBI chr 6:75,099,907...75,136,534
Ensembl chr 6:75,103,503...75,136,188

Foxa2

forkhead box A2

enables

(PMID:11914369), (PMID:14701942), (PMID:22737085)

PMID:11914369 PMID:14701942 PMID:22737085 PMID:17408383

RGD:1626707

NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326

Foxa3

forkhead box A3

enables

(PMID:8306889)
GO_REF:0000002

PMID:8306889

GO_REF:0000002

NCBI chr 1:78,662,067...78,672,321
Ensembl chr 1:78,662,431...78,672,155

Foxb1

forkhead box B1

enables

(PMID:8306889)

PMID:8306889

NCBI chr 8:70,407,221...70,409,841
Ensembl chr 8:70,408,186...70,409,781

Foxc1

forkhead box C1

enables

(PMID:15277473), (PMID:7957066)

PMID:7957066 PMID:15277473

NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803

Foxc2

forkhead box C2

enables

(PMID:16081467)

PMID:16081467

NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737

Foxd1

forkhead box D1

enables

(PMID:7957066)
(PMID:13678594)

PMID:7957066 PMID:13678594

NCBI chr 2:29,702,558...29,704,978
Ensembl chr 2:29,702,558...29,704,978

Foxd2

forkhead box D2

enables

(PMID:23332764)

NCBI chr 5:128,427,986...128,430,709
Ensembl chr 5:128,429,020...128,430,504

Foxd4

forkhead box D4

enables

GO_REF:0000002

GO_REF:0000002

NCBI chr 1:222,557,494...222,559,189
Ensembl chr 1:222,557,360...222,559,159

Foxe1

forkhead box E1

enables

(PMID:12165566), (PMID:16882747), (PMID:20094846), (PMID:20484477), (PMID:21177256), (PMID:24219130), (PMID:9697705)

PMID:9697705 PMID:12165566 PMID:16882747 PMID:20094846 PMID:20484477 More...

NCBI chr 5:60,630,027...60,632,835
Ensembl chr 5:60,630,027...60,632,835

Foxe3

forkhead box E3

enables

PMID:11980846
(PMID:11980846)

PMID:11980846 PMID:11980846

RGD:10047345

NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454

Foxf2

forkhead box F2

enables

(PMID:7957066), (PMID:8626802)

PMID:7957066 PMID:8626802

NCBI chr17:32,835,730...32,842,547
Ensembl chr17:32,836,777...32,842,176

Foxg1

forkhead box G1

enables

(PMID:23332764)

NCBI chr 6:66,674,797...66,677,611
Ensembl chr 6:66,666,587...66,678,607

Foxh1

forkhead box H1

enables

(PMID:9702198)
(PMID:17568773)

PMID:9702198 PMID:17568773

NCBI chr 7:108,387,969...108,391,566
Ensembl chr 7:108,387,969...108,390,049

Foxi1

forkhead box I1

enables

(PMID:16159312)

PMID:16159312

NCBI chr10:18,806,292...18,810,231
Ensembl chr10:18,806,308...18,810,231

Foxi2

forkhead box I2

enables

GO_REF:0000002

GO_REF:0000002

NCBI chr 1:190,222,857...190,226,657
Ensembl chr 1:190,222,703...190,226,433

Foxj2

forkhead box J2

enables

(PMID:10777590)

PMID:10777590

NCBI chr 4:156,047,043...156,073,540
Ensembl chr 4:156,046,969...156,073,518

Foxj3

forkhead box J3

enables

(PMID:23332764)

NCBI chr 5:133,140,344...133,228,489
Ensembl chr 5:133,140,884...133,228,489

Foxk1

forkhead box K1

enables

(PMID:8007964), (PMID:9271401)

PMID:8007964 PMID:9271401

NCBI chr12:12,110,119...12,175,089
Ensembl chr12:12,115,950...12,175,089

Foxk2

forkhead box K2

enables

(PMID:12402362), (PMID:1339390), (PMID:16624804), (PMID:1909027)

PMID:1339390 PMID:1909027 PMID:12402362 PMID:16624804

NCBI chr10:106,542,643...106,592,569
Ensembl chr10:106,542,566...106,592,563

Foxl1

forkhead box L1

enables

(PMID:7957066)

PMID:7957066

NCBI chr19:49,197,269...49,200,682
Ensembl chr19:49,197,400...49,198,425

Foxm1

forkhead box M1

enables

GO_REF:0000002

InterPro
RGD

PMID:9242644

GO_REF:0000002, RGD:61588

NCBI chr 4:161,639,538...161,652,012
Ensembl chr 4:161,638,816...161,650,684

Foxn1

forkhead box N1

enables

(PMID:9108066)

PMID:9108066

NCBI chr10:63,251,400...63,273,710
Ensembl chr10:63,251,400...63,273,710

Foxo1

forkhead box O1

enables

(PMID:11353388)
GO_REF:0000024
(PMID:12228231)

PMID:11353388 PMID:12228231 PMID:17916612

GO_REF:0000024, RGD:2302520

NCBI chr 2:136,312,168...136,390,603
Ensembl chr 2:136,312,168...136,387,790

Foxo3

forkhead box O3

enables

(PMID:10102273)
(PMID:11353388)

PMID:10102273 PMID:11353388

NCBI chr20:45,669,708...45,764,606
Ensembl chr20:45,672,995...45,764,561

Foxo4

forkhead box O4

enables

(PMID:22972301), (PMID:23332764)
(PMID:11353388)

PMID:11353388 PMID:22972301 PMID:23332764

NCBI chr X:66,385,241...66,392,115
Ensembl chr X:66,385,558...66,392,115

Foxp1

forkhead box P1

enables

GO_REF:0000002

GO_REF:0000002

NCBI chr 4:131,559,599...132,155,092
Ensembl chr 4:131,564,756...132,112,258

Foxp2

forkhead box P2

enables

(PMID:18987363)
GO_REF:0000107
GO_REF:0000002

RGD
Ensembl
InterPro

PMID:18987363

GO_REF:0000002 GO_REF:0000107

NCBI chr 4:43,133,827...43,712,442
Ensembl chr 4:43,133,912...43,711,683

Foxp3

forkhead box P3

enables

(PMID:11483607), (PMID:16873067), (PMID:19276356)
(PMID:17028180)

PMID:11483607 PMID:16873067 PMID:17028180 PMID:19276356

NCBI chr X:14,908,494...14,924,994
Ensembl chr X:14,908,494...14,923,838

Gata1

GATA binding protein 1

enables

(PMID:8195185), (PMID:9787185)
(PMID:12200364)

PMID:8195185 PMID:9787185 PMID:12200364 PMID:7957872

RGD:728595

NCBI chr X:14,529,706...14,537,530
Ensembl chr X:14,529,702...14,537,530

Gata2

GATA binding protein 2

RGD

PMID:11093771

RGD:9587814

NCBI chr 4:120,654,205...120,667,763
Ensembl chr 4:120,658,986...120,667,761

Gata3

GATA binding protein 3

enables

(PMID:18621058), (PMID:21867929)

PMID:18621058 PMID:21867929 PMID:9125153

RGD:632696

NCBI chr17:68,643,760...68,666,000
Ensembl chr17:68,643,873...68,665,391

Gata4

GATA binding protein 4

enables

(PMID:27783597), (PMID:8455608), (PMID:8754853)

PMID:8455608 PMID:8754853 PMID:27783597 PMID:12704188

RGD:1580391

NCBI chr15:37,459,601...37,531,291
Ensembl chr15:37,459,601...37,505,636

Gata6

GATA binding protein 6

enables

(PMID:11914369)

PMID:11914369 PMID:8248184

RGD:728607

NCBI chr18:2,188,121...2,219,532
Ensembl chr18:2,188,121...2,219,532

Gatad1

GATA zinc finger domain containing 1

enables

GO_REF:0000002

GO_REF:0000002

NCBI chr 4:30,507,530...30,519,107
Ensembl chr 4:30,507,538...30,519,107

Gatad2b

GATA zinc finger domain containing 2B

enables

GO_REF:0000002

GO_REF:0000002

NCBI chr 2:175,748,594...175,829,837
Ensembl chr 2:175,749,433...175,825,542

Gcm2

glial cells missing transcription factor 2

enables

(PMID:15863676), (PMID:20190276)

PMID:15863676 PMID:20190276

NCBI chr17:23,652,637...23,661,754
Ensembl chr17:23,652,637...23,661,754

Gli1

GLI family zinc finger 1

enables

(PMID:19706761)

PMID:19706761

NCBI chr 7:63,156,926...63,169,579
Ensembl chr 7:63,156,926...63,169,251

Gli2

GLI family zinc finger 2

enables

(PMID:15175043), (PMID:26565916), (PMID:9557682)
(PMID:16611981)

PMID:9557682 PMID:15175043 PMID:16611981 PMID:26565916

NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574

Gli3

GLI family zinc finger 3

enables

(PMID:16611981)

PMID:16611981

NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712

Gmeb2

glucocorticoid modulatory element binding protein 2

enables

PMID:10894151

NTNU_SB

PMID:10894151

RGD:12911012

NCBI chr 3:168,362,650...168,400,788
Ensembl chr 3:168,362,650...168,400,788

Grhl1

grainyhead-like transcription factor 1

enables

(PMID:18288204)
(PMID:18288204), (PMID:21081122)

PMID:18288204 PMID:21081122

NCBI chr 6:41,207,325...41,257,516
Ensembl chr 6:41,207,348...41,254,301

Grhl2

grainyhead-like transcription factor 2

enables

(PMID:19015635)
(PMID:21081122)

PMID:19015635 PMID:21081122

NCBI chr 7:68,400,287...68,530,269
Ensembl chr 7:68,400,477...68,530,258

Grhl3

grainyhead-like transcription factor 3

enables

(PMID:12666198), (PMID:21081122)

PMID:12666198 PMID:21081122

NCBI chr 5:147,774,161...147,806,291
Ensembl chr 5:147,774,160...147,806,160

Gsc2

goosecoid homeobox 2

enables

(PMID:23332764)

NCBI chr11:83,070,784...83,075,874
Ensembl chr11:83,072,138...83,074,126

Gsx1

GS homeobox 1

enables

(PMID:11731616)
(PMID:8589431), (PMID:8631293)

PMID:8589431 PMID:8631293 PMID:11731616

NCBI chr12:7,880,663...7,882,947
Ensembl chr12:7,881,460...7,882,753

Gzf1

GDNF-inducible zinc finger protein 1

enables

GO_REF:0000024
(PMID:16049025)

PMID:16049025

GO_REF:0000024

NCBI chr 3:136,119,004...136,131,223
Ensembl chr 3:136,119,113...136,131,223

Hand1

heart and neural crest derivatives expressed 1

enables

MGI:98510 (PMID:12070084)

PMID:12070084

NCBI chr10:42,006,646...42,009,213
Ensembl chr10:42,006,651...42,009,213

Hand2

heart and neural crest derivatives expressed 2

enables

MGI:98510 (PMID:12070084)

PMID:12070084

NCBI chr16:32,917,448...32,920,791
Ensembl chr16:32,917,823...32,919,891

Hes1

hes family bHLH transcription factor 1

enables

PMID:11486045

BHF-UCL

PMID:11486045

RGD:8553415

NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192

Hesx1

HESX homeobox 1

enables

(PMID:12063185), (PMID:19879326)

PMID:12063185 PMID:19879326

NCBI chr16:2,191,852...2,193,957
Ensembl chr16:2,191,852...2,193,957

Hey1

hes-related family bHLH transcription factor with YRPW motif 1

enables

(PMID:22615585)

PMID:22615585

NCBI chr 2:93,096,605...93,100,316
Ensembl chr 2:93,095,498...93,100,312

Hey2

hes-related family bHLH transcription factor with YRPW motif 2

enables

(PMID:11486045)
(PMID:22615585)

PMID:11486045 PMID:22615585

NCBI chr 1:26,822,131...26,832,218
Ensembl chr 1:26,822,131...26,832,218

Heyl

hes-related family bHLH transcription factor with YRPW motif-like

enables

(PMID:22615585)

PMID:22615585

NCBI chr 5:135,508,160...135,525,152
Ensembl chr 5:135,508,160...135,525,152

Hhex

hematopoietically expressed homeobox

enables

(PMID:10871399)

PMID:10871399 PMID:11139473

RGD:2314899

NCBI chr 1:235,190,455...235,196,042
Ensembl chr 1:235,190,455...235,196,042

Hic1

HIC ZBTB transcriptional repressor 1

enables

(PMID:15231840)

PMID:15231840

NCBI chr10:60,014,520...60,019,475
Ensembl chr10:60,011,528...60,019,475

Hif1a

hypoxia inducible factor 1 subunit alpha

enables
contributes_to

(PMID:24030251), (PMID:26245371), (PMID:9368100)
(PMID:7539918), (PMID:8756616), (PMID:9079689)

PMID:7539918 PMID:8756616 PMID:9079689 PMID:9368100 PMID:24030251 More...

RGD:2301848

NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261

Hlf

HLF transcription factor, PAR bZIP family member

enables

(PMID:8065331)

PMID:8065331

NCBI chr10:75,154,244...75,211,884
Ensembl chr10:75,154,507...75,211,935

Hlx

H2.0-like homeobox

enables

(PMID:9073066)
GO_REF:0000033

PMID:9073066

GO_REF:0000033

NCBI chr13:96,280,335...96,285,750
Ensembl chr13:96,280,339...96,285,750

Hmbox1

homeobox containing 1

enables

(PMID:23332764), (PMID:28473536)

PMID:23332764 PMID:28473536

NCBI chr15:39,067,805...39,200,633
Ensembl chr15:39,067,804...39,200,323

Hmx3

H6 family homeobox 3

enables

(PMID:10206974)

PMID:10206974

NCBI chr 1:186,313,237...186,315,201
Ensembl chr 1:186,313,063...186,315,201

Hnf1a

HNF1 homeobox A

PMID:14561216 PMID:12753154

RGD

RGD:1599297, RGD:1599299

NCBI chr12:41,638,536...41,672,806
Ensembl chr12:41,645,587...41,672,104

HNF1 homeobox B

RGD

NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888

Hnf4a

hepatocyte nuclear factor 4, alpha

enables

(PMID:8306889)

PMID:8306889 PMID:16893891

RGD:1624992

NCBI chr 3:152,186,787...152,248,320
Ensembl chr 3:152,186,787...152,248,320

Hnrnpu

heterogeneous nuclear ribonucleoprotein U

enables

GO_REF:0000024
(PMID:21235343)

PMID:21235343

GO_REF:0000024

NCBI chr13:90,069,058...90,086,905
Ensembl chr13:90,074,181...90,086,588

Hopx

HOP homeobox

NOT|enables

(PMID:12297045)

PMID:12297045

NCBI chr14:31,055,912...31,082,909
Ensembl chr14:31,075,148...31,082,909

Hoxa1

homeobox A1

enables

(PMID:23332764)
GO_REF:0000002

GO_REF:0000002

NCBI chr 4:81,255,814...81,258,587
Ensembl chr 4:81,255,883...81,258,504

Hoxa13

homeo box A13

enables

(PMID:23332764)

NCBI chr 4:81,358,956...81,361,091
Ensembl chr 4:81,358,956...81,361,091

Hoxa2

homeobox A2

enables

(PMID:15634706)

PMID:15634706

NCBI chr 4:81,262,668...81,266,970
Ensembl chr 4:81,262,768...81,265,044

Hoxa7

homeobox A7

enables

(PMID:11435435)

PMID:11435435

NCBI chr 4:81,315,730...81,317,629
Ensembl chr 4:81,314,625...81,317,659

Hoxb1

homeo box B1

enables

MGI:97495 (PMID:18787068)

PMID:18787068

NCBI chr10:81,331,507...81,332,928
Ensembl chr10:81,331,507...81,332,836

Hoxb13

homeo box B13

enables

(PMID:23332764)

NCBI chr10:81,160,498...81,162,777
Ensembl chr10:81,160,498...81,162,777

Hoxb2

homeobox B2

enables

(PMID:23332764)

NCBI chr10:81,317,828...81,320,220
Ensembl chr10:81,318,026...81,320,192

Hoxb8

homeo box B8

enables

(PMID:11571641)

PMID:11571641

NCBI chr10:81,248,313...81,251,261
Ensembl chr10:81,248,887...81,250,638

Hsf1

heat shock transcription factor 1

enables

(PMID:25963659)
(PMID:18755693)

PMID:18755693 PMID:25963659

NCBI chr 7:108,196,040...108,223,011
Ensembl chr 7:108,196,056...108,223,011

Hsf2

heat shock transcription factor 2

enables

(PMID:18755693)

PMID:18755693

NCBI chr20:36,819,864...36,847,490
Ensembl chr20:36,819,864...36,850,174

Hsf3

heat shock transcription factor 3

enables

(PMID:19864465)

PMID:19864465

NCBI chr X:61,181,376...61,233,724
Ensembl chr X:61,182,298...61,295,686

Hsf4

heat shock transcription factor 4

alphaB-crystallin promoter HSE

RGD

PMID:15308659

RGD:1599777

NCBI chr19:33,147,755...33,153,479
Ensembl chr19:33,147,755...33,153,479

Ikzf1

IKAROS family zinc finger 1

enables

MGI:2158738 (PMID:7923373)

PMID:7923373

NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416

Ikzf3

IKAROS family zinc finger 3

enables

(PMID:34155405)
(PMID:9155026)

PMID:9155026 PMID:34155405

NCBI chr10:83,460,564...83,553,591
Ensembl chr10:83,465,745...83,553,591

Ikzf4

IKAROS family zinc finger 4

enables

(PMID:22638570)

PMID:22638570

NCBI chr 7:1,063,283...1,102,940
Ensembl chr 7:1,056,890...1,084,341

Irf1

interferon regulatory factor 1

enables

(PMID:17159910)

PMID:17159910 PMID:11880315

RGD:5128716

NCBI chr10:37,917,155...37,924,166
Ensembl chr10:37,916,670...37,924,166

Irf3

interferon regulatory factor 3

enables

(PMID:17574024), (PMID:23332764)

PMID:17574024 PMID:23332764

NCBI chr 1:95,479,966...95,484,926
Ensembl chr 1:95,479,821...95,484,935

Irf4

interferon regulatory factor 4

enables

(PMID:22983707), (PMID:22992523), (PMID:22992524)

PMID:22983707 PMID:22992523 PMID:22992524

NCBI chr17:33,721,800...33,742,570
Ensembl chr17:33,721,811...33,740,070

Irf5

interferon regulatory factor 5

enables

(PMID:23332764)

NCBI chr 4:58,127,577...58,140,665
Ensembl chr 4:58,127,640...58,139,267

Irf6

interferon regulatory factor 6

enables

(PMID:28473536)

NCBI chr13:104,672,179...104,691,386
Ensembl chr13:104,672,179...104,691,386

Irx1

iroquois homeobox 1

enables

(PMID:28473536)

NCBI chr 1:31,294,615...31,300,444
Ensembl chr 1:31,294,615...31,300,444

Irx2

iroquois homeobox 2

enables

(PMID:23332764)

NCBI chr 1:30,660,960...30,666,378
Ensembl chr 1:30,660,960...30,666,378

Isl1

ISL LIM homeobox 1

enables

(PMID:24643061)

PMID:24643061 PMID:1691825 PMID:9514122 PMID:7759514

RGD:61640, RGD:2303514, RGD:2303513

NCBI chr 2:48,079,412...48,090,704
Ensembl chr 2:48,080,522...48,095,584

Isx

intestine-specific homeobox

enables

(PMID:25701869)

PMID:25701869

NCBI chr19:13,217,637...13,239,754
Ensembl chr19:13,218,552...13,239,760

Jmjd4

jumonji domain containing 4

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr10:44,234,465...44,242,754
Ensembl chr10:44,234,549...44,240,065

Jun

Jun proto-oncogene, AP-1 transcription factor subunit

PMID:12753154 PMID:17428807 PMID:10830307 PMID:10837920

ATF consensus binding site

RGD

RGD:1599299, RGD:2290488, RGD:1626699, RGD:1626488

NCBI chr 5:109,894,175...109,897,268
Ensembl chr 5:109,893,145...109,897,656

Junb

JunB proto-oncogene, AP-1 transcription factor subunit

PMID:10837920 PMID:10830307

RGD

RGD:1626488, RGD:1626699

NCBI chr19:23,176,265...23,178,049
Ensembl chr19:23,176,294...23,178,035

Jund

JunD proto-oncogene, AP-1 transcription factor subunit

PMID:15860571 PMID:10830307 PMID:10837920

RGD

RGD:1600916, RGD:1626699, RGD:1626488

NCBI chr16:18,734,121...18,735,799
Ensembl chr16:18,734,122...18,735,799

Kcnip3

potassium voltage-gated channel interacting protein 3

RGD

PMID:18191896

RGD:7207199

NCBI chr 3:114,677,027...114,742,923
Ensembl chr 3:114,677,030...114,743,556

Kdm6b

lysine demethylase 6B

enables

(PMID:17928865)

PMID:17928865

NCBI chr10:54,120,716...54,142,212
Ensembl chr10:54,121,848...54,130,794

Klf14

KLF transcription factor 14

enables

(PMID:23332764)

NCBI chr 4:59,554,011...59,556,933
Ensembl chr 4:59,554,011...59,556,933

Klf4

KLF transcription factor 4

enables

(PMID:22306741), (PMID:8940147)

PMID:8940147 PMID:22306741 PMID:12034813 PMID:17659301 PMID:15632413

RGD:619591, RGD:1643591, RGD:1643534

NCBI chr 5:70,278,843...70,283,751
Ensembl chr 5:70,278,972...70,283,602

Klf5

KLF transcription factor 5

RGD

PMID:21383775

RGD:9590238

NCBI chr15:76,060,320...76,079,445
Ensembl chr15:76,064,258...76,079,445

Lef1

lymphoid enhancer binding factor 1

enables

(PMID:10825188)
(PMID:21750544), (PMID:22235033)

PMID:10825188 PMID:21750544 PMID:22235033

NCBI chr 2:219,666,549...219,779,815
Ensembl chr 2:219,666,592...219,779,794

Lhx2

LIM homeobox 2

enables

(PMID:15173589)

PMID:15173589

NCBI chr 3:22,113,619...22,143,909
Ensembl chr 3:22,126,007...22,143,908

Lhx3

LIM homeobox 3

enables

(PMID:15271874)

PMID:15271874

NCBI chr 3:9,026,432...9,035,122
Ensembl chr 3:9,027,425...9,034,480

Lhx4

LIM homeobox 4

enables

(PMID:28473536)

NCBI chr13:67,877,109...67,917,219
Ensembl chr13:67,877,109...67,927,003

Lonp1

lon peptidase 1, mitochondrial

enables

(PMID:14739292)
GO_REF:0000104

PMID:14739292

GO_REF:0000104

NCBI chr 9:1,447,444...1,459,771
Ensembl chr 9:1,447,447...1,459,771

Mael

maelstrom spermatogenic transposon silencer

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr13:78,457,073...78,496,657
Ensembl chr13:78,457,073...78,496,657

Maf

MAF bZIP transcription factor

enables

(PMID:10603348)

PMID:10603348

NCBI chr19:43,353,867...43,713,162
Ensembl chr19:43,360,342...43,712,365

Mafb

MAF bZIP transcription factor B

enables

(PMID:11823429)

PMID:11823429

NCBI chr 3:148,998,111...149,000,031
Ensembl chr 3:148,998,122...149,000,031

Maff

MAF bZIP transcription factor F

enables

(PMID:23332764)

NCBI chr 7:110,912,367...110,923,711
Ensembl chr 7:110,912,499...110,923,851

Mafk

MAF bZIP transcription factor K

enables

(PMID:23332764)
(PMID:9240432)

PMID:9240432 PMID:23332764

NCBI chr12:14,834,628...14,856,414
Ensembl chr12:14,833,984...14,837,048
Ensembl chr12:14,833,984...14,837,048

Max

MYC associated factor X

RGD

PMID:17341548

RGD:2290581

NCBI chr 6:95,636,859...95,662,204
Ensembl chr 6:95,636,858...95,662,137

Mef2a

myocyte enhancer factor 2a

enables

ISO
IDA

(PMID:10835359)
(PMID:8096811)
PMID:10521511

PMID:8096811 PMID:10835359 PMID:10521511

RGD:8553671

NCBI chr 1:120,847,874...120,982,488
Ensembl chr 1:120,850,080...120,981,948

Mef2c

myocyte enhancer factor 2C

enables

(PMID:17336904), (PMID:21556048), (PMID:21610032)

PMID:17336904 PMID:21556048 PMID:21610032

NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880

Meis1

Meis homeobox 1

enables

MGI:97495 (PMID:15634706), (PMID:17049510)

PMID:15634706 PMID:17049510

NCBI chr14:93,155,426...93,294,373
Ensembl chr14:93,155,419...93,294,265

Meis2

Meis homeobox 2

enables

(PMID:17178831)
MGI:97495 (PMID:17049510), (PMID:18787068)

PMID:17049510 PMID:17178831 PMID:18787068

NCBI chr 3:102,742,904...102,944,833
Ensembl chr 3:102,742,900...102,949,696

Meis3

Meis homeobox 3

enables

(PMID:17178831)

PMID:17178831

NCBI chr 1:76,861,267...76,872,691
Ensembl chr 1:76,861,924...76,872,691

Men1

menin 1

enables

(PMID:20956546)

PMID:20956546

NCBI chr 1:203,638,905...203,644,871
Ensembl chr 1:203,639,000...203,644,871

Meox1

mesenchyme homeobox 1

enables

(PMID:22206000)

PMID:22206000

NCBI chr10:86,818,450...86,837,563
Ensembl chr10:86,818,478...86,837,660

Meox2

mesenchyme homeobox 2

enables

(PMID:22206000), (PMID:9073066)

PMID:9073066 PMID:22206000

NCBI chr 6:53,856,760...53,917,467
Ensembl chr 6:53,856,758...53,917,467

Mir214

microRNA 214

enables

(PMID:29363576)

PMID:29363576

NCBI chr13:74,588,374...74,588,481
Ensembl chr13:74,588,372...74,588,481

Mlxipl

MLX interacting protein-like

RGD

PMID:11724780

RGD:634534

NCBI chr12:21,541,608...21,577,120
Ensembl chr12:21,543,576...21,577,112

Mmp12

matrix metallopeptidase 12

enables

(PMID:24784232)

PMID:24784232

NCBI chr 8:4,581,785...4,591,687
Ensembl chr 8:4,581,785...4,599,611

Msx1

msh homeobox 1

enables

(PMID:8858134)

PMID:8858134

NCBI chr14:72,961,036...72,964,970
Ensembl chr14:72,961,148...72,964,966

Msx2

msh homeobox 2

enables

(PMID:9073066)

PMID:9073066

NCBI chr17:11,097,214...11,102,879
Ensembl chr17:11,097,103...11,102,879

Mta1

metastasis associated 1

enables

GO_REF:0000002

GO_REF:0000002

NCBI chr 6:132,178,608...132,217,641
Ensembl chr 6:132,178,853...132,217,641

Mta2

metastasis associated 1 family, member 2

enables

GO_REF:0000002

GO_REF:0000002

NCBI chr 1:205,838,181...205,846,903
Ensembl chr 1:205,837,964...205,846,946

Mta3

metastasis associated 1 family, member 3

enables

GO_REF:0000002

GO_REF:0000002

NCBI chr 6:10,867,028...10,987,221
Ensembl chr 6:10,867,011...10,986,883

myotrophin

RGD

NCBI chr 4:64,159,273...64,186,686
Ensembl chr 4:64,157,641...64,186,724

Mybbp1a

MYB binding protein 1a

enables

IDA
IBA

GO_REF:0000033

PMID:2261643

GO_REF:0000033, RGD:61666

NCBI chr10:57,056,897...57,067,258
Ensembl chr10:57,056,874...57,067,255

MYC proto-oncogene, bHLH transcription factor

PMID:15139290 PMID:17341548

RGD

RGD:1601462, RGD:2290581

NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630

Myf5

myogenic factor 5

enables

(PMID:22638570)

PMID:22638570

NCBI chr 7:42,802,946...42,806,177
Ensembl chr 7:42,802,946...42,806,177

Myod1

myogenic differentiation 1

enables

(PMID:22638570), (PMID:25640239)

PMID:22638570 PMID:25640239

NCBI chr 1:96,884,864...96,887,574
Ensembl chr 1:96,884,948...96,887,554

Myog

myogenin

enables

(PMID:11076940)
(PMID:22638570)

PMID:11076940 PMID:22638570

NCBI chr13:45,745,455...45,748,044
Ensembl chr13:45,745,436...45,748,039

Myrf

myelin regulatory factor

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr 1:206,854,175...206,886,276
Ensembl chr 1:206,854,175...206,886,157

Myrfl

myelin regulatory factor-like

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr 7:52,403,324...52,519,907
Ensembl chr 7:52,403,650...52,519,907

Nanog

Nanog homeobox

enables

(PMID:18400104), (PMID:20937355)

PMID:18400104 PMID:20937355

NCBI chr 4:155,943,737...155,951,116
Ensembl chr 4:155,943,737...155,951,116

nucleolin

RGD

NCBI chr 9:86,999,588...87,008,112
Ensembl chr 9:86,998,019...87,008,136

Ncor1

nuclear receptor co-repressor 1

enables

(PMID:17928865)

PMID:17928865

NCBI chr10:46,999,536...47,142,294
Ensembl chr10:46,999,536...47,141,032

Ncor2

nuclear receptor co-repressor 2

enables

(PMID:17928865)

PMID:17928865

NCBI chr12:31,466,418...31,628,319
Ensembl chr12:31,466,412...31,628,319

Neurod1

neuronal differentiation 1

contributes_to
enables

(PMID:10545951)
(PMID:15793245), (PMID:18388149)

PMID:10545951 PMID:15793245 PMID:18388149

NCBI chr 3:64,359,554...64,363,526
Ensembl chr 3:64,359,395...64,363,649

Neurog2

neurogenin 2

enables

(PMID:17141158)

PMID:17141158

NCBI chr 2:216,092,709...216,095,276
Ensembl chr 2:216,093,363...216,094,154

Nfatc1

nuclear factor of activated T-cells 1

enables

(PMID:15058383), (PMID:7650004)

PMID:7650004 PMID:15058383

NCBI chr18:74,046,422...74,156,041
Ensembl chr18:74,046,904...74,156,028

Nfatc2

nuclear factor of activated T-cells 2

enables

(PMID:7650004), (PMID:8940147)

PMID:7650004 PMID:8940147

NCBI chr 3:157,195,970...157,328,640
Ensembl chr 3:157,198,872...157,328,325

Nfatc3

nuclear factor of activated T-cells 3

enables

(PMID:7650004)

PMID:7650004

NCBI chr19:33,960,643...34,035,150
Ensembl chr19:33,960,852...34,035,150

Nfe2l2

NFE2 like bZIP transcription factor 2

enables

(PMID:9240432)
(PMID:20452972)

PMID:9240432 PMID:20452972 PMID:19735445

RGD:6893328

NCBI chr 3:60,594,239...60,621,712
Ensembl chr 3:60,594,242...60,621,737

Nfkb1

nuclear factor kappa B subunit 1

enables

(PMID:19404405)

PMID:19404405 PMID:16135962

RGD:1598788

NCBI chr 2:224,016,214...224,132,135
Ensembl chr 2:224,016,214...224,110,404

Nfya

nuclear transcription factor Y subunit alpha

enables

MGI:97317 (PMID:1698608)

PMID:1698608

NCBI chr 9:12,587,437...12,613,911
Ensembl chr 9:12,586,259...12,613,898

Nfyb

nuclear transcription factor Y subunit beta

enables

MGI:97316 (PMID:1698608)
GO_REF:0000002

PMID:1698608

GO_REF:0000002

NCBI chr 7:20,964,988...20,980,569
Ensembl chr 7:20,964,993...20,980,565

Nkx2-1

NK2 homeobox 1

enables

(PMID:11914369), (PMID:7896788)

PMID:7896788 PMID:11914369 PMID:17729273

RGD:2306235

NCBI chr 6:73,996,601...74,001,483
Ensembl chr 6:73,996,601...73,999,791

Nkx2-2

NK2 homeobox 2

enables

(PMID:14701942)

PMID:14701942

NCBI chr 3:134,619,701...134,630,282
Ensembl chr 3:134,620,039...134,622,411

Nkx2-5

NK2 homeobox 5

enables

(PMID:10948187)

PMID:10948187 PMID:11042197

RGD:2306248

NCBI chr10:16,340,428...16,347,004
Ensembl chr10:16,344,159...16,346,934

Nkx2-8

NK2 homeobox 8

enables

(PMID:12167706)

PMID:12167706 PMID:12167706

RGD:1302328

NCBI chr 6:74,086,274...74,087,977
Ensembl chr 6:74,086,274...74,087,977

Nkx3-1

NK3 homeobox 1

enables

(PMID:19780584)
(PMID:9142502)

PMID:9142502 PMID:19780584

NCBI chr15:44,473,851...44,476,443
Ensembl chr15:44,473,851...44,476,441

NK6 homeobox 1

RGD

NCBI chr14:7,969,756...7,976,689
Ensembl chr14:7,969,756...7,976,681

Nkx6-2

NK6 homeobox 2

enables

(PMID:8096811)

PMID:8096811

NCBI chr 1:194,380,149...194,383,533
Ensembl chr 1:194,381,975...194,383,515

Nkx6-3

NK6 homeobox 3

enables

(PMID:28473536)

NCBI chr16:68,868,404...68,873,617
Ensembl chr16:68,868,404...68,873,617

Nlrp3

NLR family, pyrin domain containing 3

enables

GO_REF:0000033
(PMID:26098997)

PMID:26098997

GO_REF:0000033

NCBI chr10:44,326,770...44,353,814
Ensembl chr10:44,328,566...44,352,811

Nobox

NOBOX oogenesis homeobox

enables

(PMID:27798098)
(PMID:20659469)

PMID:20659469 PMID:27798098

NCBI chr 4:72,128,931...72,134,436
Ensembl chr 4:72,128,931...72,134,436

Nr0b1

nuclear receptor subfamily 0, group B, member 1

NOT|enables

(PMID:27601327)

PMID:27601327 PMID:12697699

RGD:1624302

NCBI chr X:50,756,886...50,761,014
Ensembl chr X:50,756,886...50,761,011

Nr1d1

nuclear receptor subfamily 1, group D, member 1

enables

GO_REF:0000002

GO_REF:0000002

NCBI chr10:83,728,348...83,735,562
Ensembl chr10:83,728,318...83,735,705

Nr1d2

nuclear receptor subfamily 1, group D, member 2

enables

GO_REF:0000002

GO_REF:0000002

NCBI chr15:7,524,257...7,550,553
Ensembl chr15:7,524,257...7,550,553

Nr1h2

nuclear receptor subfamily 1, group H, member 2

contributes_to

RGD

PMID:7892230

RGD:729016

NCBI chr 1:95,041,967...95,047,358
Ensembl chr 1:95,041,967...95,047,377

Nr1h3

nuclear receptor subfamily 1, group H, member 3

enables

GO_REF:0000002

InterPro
RGD

PMID:7935418

GO_REF:0000002, RGD:61675

NCBI chr 3:77,158,808...77,168,907
Ensembl chr 3:77,158,808...77,168,722

Nr1h4

nuclear receptor subfamily 1, group H, member 4

enables

(PMID:12815072)
GO_REF:0000002

PMID:12815072

GO_REF:0000002

NCBI chr 7:23,846,122...23,942,085
Ensembl chr 7:23,846,122...23,942,047

Nr1i3

nuclear receptor subfamily 1, group I, member 3

enables

GO_REF:0000002

GO_REF:0000002

NCBI chr13:83,632,940...83,638,193
Ensembl chr13:83,632,899...83,637,906

Nr2c1

nuclear receptor subfamily 2, group C, member 1

enables

GO_REF:0000002

GO_REF:0000002

NCBI chr 7:28,715,347...28,768,624
Ensembl chr 7:28,715,562...28,767,160

Nr2c2

nuclear receptor subfamily 2, group C, member 2

enables

(PMID:10644740)
GO_REF:0000002

PMID:10644740

GO_REF:0000002

NCBI chr 4:124,610,216...124,666,813
Ensembl chr 4:124,608,960...124,661,902

Nr2e3

nuclear receptor subfamily 2, group E, member 3

enables

(PMID:10220376)

PMID:10220376

NCBI chr 8:60,365,581...60,373,383
Ensembl chr 8:60,366,124...60,373,163

Nr2f1

nuclear receptor subfamily 2, group F, member 1

enables

(PMID:10644740)
(PMID:24349493), (PMID:7823919)

PMID:7823919 PMID:10644740 PMID:24349493

NCBI chr 2:8,040,375...8,050,123
Ensembl chr 2:8,040,377...8,050,123

Nr2f2

nuclear receptor subfamily 2, group F, member 2

enables

(PMID:7823919)
(PMID:9343308)

PMID:7823919 PMID:9343308 PMID:12777384

RGD:737636

NCBI chr 1:124,008,282...124,022,521
Ensembl chr 1:124,009,181...124,022,031

Nr2f6

nuclear receptor subfamily 2, group F, member 6

enables

ISO
IDA

(PMID:10644740)
PMID:9343308

PMID:10644740 PMID:9343308

RGD:8553874

NCBI chr16:18,046,012...18,053,914
Ensembl chr16:18,046,013...18,053,459

Nr3c1

nuclear receptor subfamily 3, group C, member 1

enables

(PMID:7883868)

PMID:7883868 PMID:8618925 PMID:9001244

RGD:1601060, RGD:634124

NCBI chr18:31,271,681...31,393,320
Ensembl chr18:31,271,681...31,393,375

Nr3c2

nuclear receptor subfamily 3, group C, member 2

enables

PMID:8690788 PMID:8618925

GO_REF:0000002

InterPro
RGD

GO_REF:0000002, RGD:1601056, RGD:1601060

NCBI chr19:30,715,634...31,059,885
Ensembl chr19:30,715,648...31,059,885

Nr4a1

nuclear receptor subfamily 4, group A, member 1

enables

(PMID:18388149), (PMID:8961274)

PMID:8961274 PMID:18388149

NCBI chr 7:132,368,399...132,389,300
Ensembl chr 7:132,374,840...132,389,297

Nr4a2

nuclear receptor subfamily 4, group A, member 2

enables

IDA
IEA
ISO

PMID:8737662
GO_REF:0000002
(PMID:8961274)

InterPro
RGD

PMID:8961274 PMID:8737662

GO_REF:0000002, RGD:8553440

NCBI chr 3:41,689,847...41,707,036
Ensembl chr 3:41,689,851...41,697,877

Nr4a3

nuclear receptor subfamily 4, group A, member 3

enables

(PMID:8961274)

PMID:8961274

NCBI chr 5:62,361,588...62,401,489
Ensembl chr 5:62,361,822...62,402,733

Nr5a1

nuclear receptor subfamily 5, group A, member 1

enables

(PMID:27378692)

PMID:27378692 PMID:12697699

RGD:1624302

NCBI chr 3:22,464,786...22,486,328
Ensembl chr 3:22,465,502...22,486,328

Nr5a2

nuclear receptor subfamily 5, group A, member 2

enables

(PMID:16289203)

PMID:16289203

NCBI chr13:48,313,634...48,433,494
Ensembl chr13:48,316,301...48,433,326

Nr6a1

nuclear receptor subfamily 6, group A, member 1

enables

(PMID:7854358), (PMID:9025060)

PMID:7854358 PMID:9025060

NCBI chr 3:22,495,109...22,683,132
Ensembl chr 3:22,496,943...22,683,131

Nsd2

nuclear receptor binding SET domain protein 2

enables

(PMID:23241889)

PMID:23241889

NCBI chr14:76,833,179...76,911,304
Ensembl chr14:76,835,637...76,913,641

Osr2

odd-skipped related transciption factor 2

enables

GO_REF:0000024
(PMID:17547533)

PMID:17547533

GO_REF:0000024

NCBI chr 7:66,487,841...66,495,003
Ensembl chr 7:66,487,839...66,495,224

Pax3

paired box 3

enables

(PMID:11863357)

PMID:11863357

NCBI chr 9:79,567,455...79,664,042
Ensembl chr 9:79,568,634...79,664,042

Pax6

paired box 6

enables

(PMID:23622063)

PMID:23622063 PMID:12370174

RGD:632189

NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014

Pax7

paired box 7

enables

(PMID:23070814)

PMID:23070814

NCBI chr 5:151,996,368...152,098,023
Ensembl chr 5:151,999,092...152,097,979

paired box 8

RGD

NCBI chr 3:7,185,721...7,242,363
Ensembl chr 3:7,185,723...7,242,363

Pbx1

PBX homeobox 1

enables

MGI:104717|MGI:108564|MGI:1201409|MGI:2445415|MGI:96182 (PMID:15634706), (PMID:16847320), (PMID:17049510), (PMID:18787068)

PMID:15634706 PMID:16847320 PMID:17049510 PMID:18787068

NCBI chr13:80,278,766...80,588,563
Ensembl chr13:80,278,770...80,588,594

Pbx3

PBX homeobox 3

enables

(PMID:16847320)

PMID:16847320

NCBI chr 3:17,488,691...17,682,412
Ensembl chr 3:17,488,693...17,682,791

Pbx4

PBX homeobox 4

enables

(PMID:17875925)

PMID:17875925

NCBI chr16:19,555,089...19,590,054
Ensembl chr16:19,555,090...19,590,014

Pdx1

pancreatic and duodenal homeobox 1

enables

(PMID:14701942)

PMID:14701942 PMID:10094480

RGD:1598709

NCBI chr12:7,757,865...7,763,064
Ensembl chr12:7,757,865...7,763,064

Pgr

progesterone receptor

RGD

PMID:17109827

RGD:7248706

NCBI chr 8:6,072,673...6,131,552
Ensembl chr 8:6,072,673...6,131,344

Pitx2

paired-like homeodomain 2

enables

(PMID:20816801)

PMID:20816801

NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293

Pknox1

PBX/knotted 1 homeobox 1

enables

(PMID:17875925)

PMID:17875925

NCBI chr20:9,662,866...9,705,030
Ensembl chr20:9,662,899...9,703,727

Pknox2

PBX/knotted 1 homeobox 2

enables

MGI:97495 (PMID:16847320), (PMID:17049510)

PMID:16847320 PMID:17049510

NCBI chr 8:36,600,633...36,863,131
Ensembl chr 8:36,600,636...36,790,940

Plagl2

PLAG1 like zinc finger 2

enables

(PMID:15361364)

PMID:15361364

NCBI chr 3:141,695,322...141,708,516
Ensembl chr 3:141,695,322...141,708,503

Polrmt

RNA polymerase mitochondrial

enables

(PMID:29445193)
(PMID:23283301)

PMID:23283301 PMID:29445193

NCBI chr 7:9,959,532...9,969,791
Ensembl chr 7:9,959,576...9,969,791

Pou1f1

POU class 1 homeobox 1

enables

(PMID:7902581)

PMID:7902581

NCBI chr11:3,316,818...3,334,804
Ensembl chr11:3,317,058...3,334,801

Pou2af2

POU class 2 homeobox associating factor 2

enables

(PMID:35576971)
GO_REF:0000033

PMID:35576971

GO_REF:0000033

NCBI chr 8:51,607,780...51,648,790
Ensembl chr 8:51,607,763...51,648,628

Pou2f1

POU class 2 homeobox 1

enables

(PMID:11997177), (PMID:7945330), (PMID:9242494)
(PMID:1690859), (PMID:17140559), (PMID:7969117), (PMID:8131747), (PMID:8960364)

PMID:1690859 PMID:7945330 PMID:7969117 PMID:8131747 PMID:8960364 More...

NCBI chr13:78,120,617...78,263,306
Ensembl chr13:78,130,685...78,263,363

Pou2f2

POU class 2 homeobox 2

enables

(PMID:17141158), (PMID:7720710), (PMID:7902581)
(PMID:9242494)

PMID:7720710 PMID:7902581 PMID:9242494 PMID:17141158 PMID:9196379

NCBI chr 1:80,682,330...80,769,756
Ensembl chr 1:80,685,741...80,724,261

Pou2f3

POU class 2 homeobox 3

enables

(PMID:9242494)
(PMID:8224904)

PMID:8224904 PMID:9242494

NCBI chr 8:43,495,408...43,577,795
Ensembl chr 8:43,495,527...43,577,795

Pou3f1

POU class 3 homeobox 1

enables

(PMID:9242494)

PMID:9242494 PMID:9196379

NCBI chr 5:136,910,391...136,913,371
Ensembl chr 5:136,910,391...136,913,371

Pou3f2

POU class 3 homeobox 2

enables

(PMID:17141158)

PMID:17141158 PMID:9196379

NCBI chr 5:36,077,930...36,083,838
Ensembl chr 5:36,077,930...36,083,838

Pou3f3

POU class 3 homeobox 3

enables

GO_REF:0000024
(PMID:11997177)
GO_REF:0000107

PMID:11997177

GO_REF:0000024 GO_REF:0000107

NCBI chr 9:44,945,872...44,948,998
Ensembl chr 9:44,945,872...44,948,992

Pou3f4

POU class 3 homeobox 4

enables

(PMID:17141158)

PMID:17141158

NCBI chr X:75,858,646...75,859,923
Ensembl chr X:75,858,646...75,859,923

Pou4f1

POU class 4 homeobox 1

enables

GO_REF:0000024
(PMID:17668438), (PMID:7935408), (PMID:8290353), (PMID:8621561)

PMID:7935408 PMID:8290353 PMID:8621561 PMID:17668438

GO_REF:0000024

NCBI chr15:81,253,714...81,260,057
Ensembl chr15:81,257,781...81,259,728

Pou4f2

POU class 4 homeobox 2

enables

GO_REF:0000024
(PMID:17668438)
(PMID:7935408), (PMID:8290353)
(PMID:24643061), (PMID:7904822)

PMID:7904822 PMID:7935408 PMID:8290353 PMID:17668438 PMID:24643061

GO_REF:0000024

NCBI chr19:29,486,686...29,490,327
Ensembl chr19:29,486,686...29,490,327

Pou4f3

POU class 4 homeobox 3

enables

GO_REF:0000024
(PMID:7935408), (PMID:8290353)

PMID:7935408 PMID:8290353

GO_REF:0000024

NCBI chr18:34,390,205...34,392,797
Ensembl chr18:34,390,205...34,392,797

Pou5f1

POU class 5 homeobox 1

enables

(PMID:16518401), (PMID:1690859), (PMID:17938240), (PMID:18400104), (PMID:19796622), (PMID:23508100), (PMID:23798425), (PMID:7945330), (PMID:7969117), (PMID:8960364), (PMID:9649510)
(PMID:20713518)

PMID:1690859 PMID:7945330 PMID:7969117 PMID:8960364 PMID:9649510 More...

NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891

Pou5f2

POU domain class 5, transcription factor 2

enables

(PMID:7902581)

PMID:7902581

NCBI chr 2:7,907,504...7,908,738

Pou6f1

POU class 6 homeobox 1

enables

(PMID:8645295)
(PMID:8463278)

PMID:8463278 PMID:8645295

NCBI chr 7:131,677,719...131,700,869
Ensembl chr 7:131,680,141...131,686,843
Ensembl chr 7:131,680,141...131,686,843

Ppara

peroxisome proliferator activated receptor alpha

enables

(PMID:16271724)

PMID:16271724 PMID:16280383

RGD:11035228

NCBI chr 7:116,832,405...116,900,878
Ensembl chr 7:116,832,756...116,895,346

Pparg

peroxisome proliferator-activated receptor gamma

enables

(PMID:9568716)

PMID:9568716

NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468

Ppargc1a

PPARG coactivator 1 alpha

enables

ISO
IEA
ISS

(PMID:23836911)
GO_REF:0000107
GO_REF:0000024

PMID:23836911

GO_REF:0000024 GO_REF:0000107

NCBI chr14:58,860,752...59,516,525
Ensembl chr14:58,861,144...59,512,656

Prdm16

PR/SET domain 16

enables

(PMID:12816872)
(PMID:17618855)

PMID:12816872 PMID:17618855

NCBI chr 5:164,879,864...165,203,986
Ensembl chr 5:164,880,587...165,203,601

Prdm2

PR/SET domain 2

enables

(PMID:9334209)

PMID:9334209

NCBI chr 5:155,421,066...155,531,884
Ensembl chr 5:155,422,134...155,531,825

Prdm5

PR/SET domain 5

enables

(PMID:17636019)

PMID:17636019

NCBI chr 4:95,075,736...95,237,921
Ensembl chr 4:95,075,768...95,238,301

Prdm9

PR/SET domain 9

enables

(PMID:22028627)

PMID:22028627

NCBI chr 1:56,505,579...56,525,726
Ensembl chr 1:56,505,579...56,525,652

Prox1

prospero homeobox 1

enables

(PMID:21040746)

PMID:21040746

NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183

Ptbp1

polypyrimidine tract binding protein 1

RGD

PMID:1561080

RGD:10045981

NCBI chr 7:9,842,574...9,852,332
Ensembl chr 7:9,842,574...9,852,397

Ptf1a

pancreas associated transcription factor 1a

enables

(PMID:17938243)

PMID:17938243

NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135

Rag1

recombination activating 1

enables

GO_REF:0000033
(PMID:10601033), (PMID:19396172)

PMID:10601033 PMID:19396172

GO_REF:0000033

NCBI chr 3:87,917,061...87,928,158
Ensembl chr 3:87,917,004...87,928,291

Rag2

recombination activating 2

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr 3:87,902,373...87,910,227
Ensembl chr 3:87,902,238...87,911,066

Rara

retinoic acid receptor, alpha

enables

MGI:98214|MGI:98215|MGI:98216 (PMID:17928865), (PMID:7823919)

PMID:7823919 PMID:17928865

NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142

Rarb

retinoic acid receptor, beta

enables

MGI:98214|MGI:98215|MGI:98216 (PMID:7823919)

PMID:7823919

NCBI chr15:8,700,533...9,051,288
Ensembl chr15:8,406,492...9,051,288

Rbpj

recombination signal binding protein for immunoglobulin kappa J region

enables

(PMID:23303788)
(PMID:17658278), (PMID:17938243), (PMID:18381292)

PMID:17658278 PMID:17938243 PMID:18381292 PMID:23303788

NCBI chr14:57,338,493...57,523,330
Ensembl chr14:57,338,507...57,523,353

Rel

REL proto-oncogene, NF-kB subunit

PMID:15496515 PMID:15312903

RGD

RGD:2300280, RGD:2300285

NCBI chr14:97,690,105...97,721,194
Ensembl chr14:97,695,161...97,720,892

Rela

RELA proto-oncogene, NF-kB subunit

enables

(PMID:23184950)

PMID:23184950

NCBI chr 1:202,925,001...202,935,484
Ensembl chr 1:202,924,945...202,935,484

Repin1

replication initiator 1

enables

ISO
IEA
ISS

(PMID:10606657), (PMID:2174103)
GO_REF:0000107
GO_REF:0000024

PMID:2174103 PMID:10606657

GO_REF:0000024 GO_REF:0000107

NCBI chr 4:77,548,724...77,554,242
Ensembl chr 4:77,548,849...77,554,257

Rere

arginine-glutamic acid dipeptide repeats

enables

GO_REF:0000002

GO_REF:0000002

NCBI chr 5:160,765,855...161,097,678
Ensembl chr 5:160,765,934...161,097,677

Rest

RE1-silencing transcription factor

enables

PMID:10490617
(PMID:11039732)
(PMID:10490617)
GO_REF:0000024

PMID:10490617 PMID:11039732 PMID:10490617

GO_REF:0000024, RGD:14397572

NCBI chr14:30,859,109...30,879,828
Ensembl chr14:30,862,553...30,894,354

Rfc1

replication factor C subunit 1

RGD

PMID:9826522

RGD:2307113

NCBI chr14:42,966,279...43,041,372
Ensembl chr14:42,966,324...43,041,370

Rfx3

regulatory factor X3

enables

(PMID:24531968)

PMID:24531968

NCBI chr 1:225,449,872...225,709,622
Ensembl chr 1:225,456,187...225,709,402

Rfx5

regulatory factor X5

enables

(PMID:23332764)

NCBI chr 2:182,521,191...182,528,720
Ensembl chr 2:182,521,202...182,528,717

Rora

RAR-related orphan receptor A

enables

(PMID:11053433)
(PMID:18055760)

PMID:11053433 PMID:18055760

NCBI chr 8:69,301,635...70,034,741
Ensembl chr 8:69,301,733...70,025,931

Rorb

RAR-related orphan receptor B

enables

GO_REF:0000002
(PMID:16574740)

InterPro
RGD

PMID:16574740

GO_REF:0000002

NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390

Rxra

retinoid X receptor alpha

enables

(PMID:11915042)
GO_REF:0000002
MGI:97856|MGI:97857 (PMID:7823919)

PMID:7823919 PMID:11915042

GO_REF:0000002

NCBI chr 3:10,989,832...11,076,366
Ensembl chr 3:10,989,832...11,073,712

Rxrb

retinoid X receptor beta

enables

MGI:97856|MGI:97857 (PMID:7823919)
GO_REF:0000002

PMID:7823919

GO_REF:0000002

NCBI chr20:4,816,813...4,823,267
Ensembl chr20:4,816,815...4,828,773

Rxrg

retinoid X receptor gamma

enables

MGI:97856|MGI:97857 (PMID:7823919)
GO_REF:0000002

PMID:7823919

GO_REF:0000002

NCBI chr13:79,743,430...79,785,173
Ensembl chr13:79,743,563...79,785,167

Safb

scaffold attachment factor B

enables

IDA
IBA

GO_REF:0000033

PMID:9671816

GO_REF:0000033, RGD:634000

NCBI chr 9:1,417,449...1,438,408
Ensembl chr 9:1,417,525...1,438,644

Safb2

scaffold attachment factor B2

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr 9:1,395,852...1,417,010
Ensembl chr 9:1,387,107...1,417,038

Satb1

SATB homeobox 1

enables

(PMID:15851481)

PMID:15851481

NCBI chr 9:4,677,817...4,773,061
Ensembl chr 9:4,680,920...4,753,251

Satb2

SATB homeobox 2

enables

MGI:88096|MGI:99829 (PMID:16751105)

PMID:16751105

NCBI chr 9:58,348,027...58,534,256
Ensembl chr 9:58,350,246...58,530,707

Scrt1

scratch family transcriptional repressor 1

enables

(PMID:23332764)

NCBI chr 7:108,240,986...108,244,636
Ensembl chr 7:108,240,986...108,244,636

Scx

scleraxis bHLH transcription factor

enables

(PMID:9328840)

PMID:9328840

NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:108,176,608...108,178,626

Shox1

SHOX homeobox 1

enables

(PMID:11751690)

PMID:11751690

NCBI chr X:116,688,163...116,695,111
Ensembl chr X:116,688,163...116,695,058

Shox2

SHOX homeobox 2

enables

GO_REF:0000107
(PMID:23332764)

GO_REF:0000107

NCBI chr 2:151,217,049...151,227,180
Ensembl chr 2:151,217,552...151,227,143

Sirt3

sirtuin 3

enables

(PMID:29445193)
(PMID:23283301)

PMID:23283301 PMID:29445193

NCBI chr 1:195,942,066...195,964,472
Ensembl chr 1:195,942,073...195,964,808

Six1

SIX homeobox 1

enables

(PMID:15141091)
(PMID:17098221), (PMID:9826681)

PMID:9826681 PMID:15141091 PMID:17098221

NCBI chr 6:91,746,739...91,751,975
Ensembl chr 6:91,746,739...91,751,975

Six2

SIX homeobox 2

enables

(PMID:15327782), (PMID:8814301)

PMID:8814301 PMID:15327782

NCBI chr 6:8,974,859...8,981,345
Ensembl chr 6:8,967,157...8,981,193

Six3

SIX homeobox 3

enables

(PMID:8814301)

PMID:8814301

NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301

Six4

SIX homeobox 4

enables

(PMID:8814301), (PMID:9826681)

PMID:8814301 PMID:9826681

NCBI chr 6:91,802,328...91,816,002
Ensembl chr 6:91,802,329...91,815,992

Six5

SIX homeobox 5

enables

(PMID:8814301)

PMID:8814301

NCBI chr 1:78,740,812...78,745,890
Ensembl chr 1:78,741,367...78,745,890

Sltm

SAFB-like, transcription modulator

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr 8:71,215,995...71,261,821
Ensembl chr 8:71,216,612...71,261,825

Smad1

SMAD family member 1

enables

(PMID:23169531)

PMID:23169531

NCBI chr19:28,513,130...28,573,665
Ensembl chr19:28,513,131...28,573,651

Smad3

SMAD family member 3

enables

(PMID:10823886)
Smad binding elements SBE1 and SBE2 in alpha-smooth muscle actin promoter
Smad binding element (SBE) in the rat Tert gene promoter

PMID:10823886 PMID:16891311 PMID:12702545 PMID:16205635

RGD:1625706, RGD:1299323, RGD:2300406

NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960

Smad4

SMAD family member 4

enables

(PMID:10823886)

PMID:10823886

NCBI chr18:67,243,742...67,274,438
Ensembl chr18:67,243,742...67,274,438

Snai1

snail family transcriptional repressor 1

enables

(PMID:9676199)

PMID:9676199

NCBI chr 3:156,248,479...156,252,969
Ensembl chr 3:156,248,485...156,252,969

Snai2

snail family transcriptional repressor 2

enables

(PMID:10518215), (PMID:10866665)

PMID:10518215 PMID:10866665

NCBI chr11:86,182,788...86,186,203
Ensembl chr11:86,181,909...86,186,200

Snapc1

small nuclear RNA activating complex, polypeptide 1

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr 6:92,684,785...92,710,772
Ensembl chr 6:92,684,752...92,707,746

Sox1

SRY-box transcription factor 1

enables

(PMID:9512512)

PMID:9512512

NCBI chr16:77,135,577...77,139,592
Ensembl chr16:77,137,584...77,138,762

Sox13

SRY-box transcription factor 13

enables

(PMID:9421502), (PMID:9524265)

PMID:9421502 PMID:9524265

NCBI chr13:44,831,097...44,875,522
Ensembl chr13:44,831,085...44,875,762

Sox17

SRY-box transcription factor 17

enables

(PMID:8636240)

PMID:8636240

NCBI chr 5:15,016,660...15,022,228
Ensembl chr 5:15,016,731...15,022,228

Sox18

SRY-box transcription factor 18

enables

(PMID:7651823)

PMID:7651823

NCBI chr 3:168,785,488...168,787,290
Ensembl chr 3:168,785,490...168,787,290

Sox2

SRY-box transcription factor 2

enables

(PMID:20713518)
(PMID:18400104), (PMID:23169531), (PMID:7628452), (PMID:9649510), (PMID:9669521)

PMID:7628452 PMID:9649510 PMID:9669521 PMID:18400104 PMID:20713518 More...

NCBI chr 2:117,536,929...117,539,340
Ensembl chr 2:117,536,929...117,539,338

Sox6

SRY-box transcription factor 6

enables

(PMID:16462943)

PMID:16462943

NCBI chr 1:169,723,306...170,334,846
Ensembl chr 1:169,729,194...170,277,386

Sox7

SRY-box transcription factor 7

enables

(PMID:10320775)

PMID:10320775

NCBI chr15:38,180,503...38,187,264
Ensembl chr15:38,180,503...38,187,264

Sox8

SRY-box transcription factor 8

enables

(PMID:10684944)

PMID:10684944

NCBI chr10:14,584,829...14,589,818
Ensembl chr10:14,584,829...14,589,818

Sox9

SRY-box transcription factor 9

enables

(PMID:31194875)
(PMID:15800003), (PMID:25229425), (PMID:26146088)

PMID:15800003 PMID:25229425 PMID:26146088 PMID:31194875

NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994

Sp1

Sp1 transcription factor

enables

(PMID:11071760)
(PMID:12169688)

PMID:11071760 PMID:12169688 PMID:12753154 PMID:10837920

RGD:1599299, RGD:1626488

NCBI chr 7:133,541,302...133,571,961
Ensembl chr 7:133,541,491...133,571,961

Sp4

Sp4 transcription factor

enables

(PMID:23332764)

NCBI chr 6:139,187,458...139,252,741
Ensembl chr 6:139,192,147...139,252,126

Sp5

Sp5 transcription factor

enables

(PMID:11071760)

PMID:11071760

NCBI chr 3:55,274,931...55,277,733
Ensembl chr 3:55,274,931...55,277,733

Spdef

SAM pointed domain containing ets transcription factor

enables

(PMID:23332764)

NCBI chr20:5,771,440...5,785,893
Ensembl chr20:5,771,441...5,785,893

Spi1

Spi-1 proto-oncogene

enables

IDA
ISO
IEA

(PMID:1409581), (PMID:23775123)
(PMID:33951726)
GO_REF:0000002

PMID:1409581 PMID:23775123 PMID:33951726 PMID:10867017 PMID:15688197

GO_REF:0000002, RGD:633204, RGD:9586722

NCBI chr 3:77,059,744...77,093,730
Ensembl chr 3:77,073,012...77,092,393

Spib

Spi-B transcription factor

enables

GO_REF:0000002

GO_REF:0000002

NCBI chr 1:95,018,939...95,024,804
Ensembl chr 1:95,018,947...95,024,780

Srebf1

sterol regulatory element binding transcription factor 1

enables

(PMID:14654692)

PMID:14654692 PMID:9786926

RGD:2308843

NCBI chr10:45,007,637...45,029,650
Ensembl chr10:45,007,637...45,029,650

Srebf2

sterol regulatory element binding transcription factor 2

enables

PMID:12446768

MGI

PMID:12446768

RGD:628485

NCBI chr 7:113,663,202...113,720,850
Ensembl chr 7:113,663,202...113,720,848

Srf

serum response factor

enables

(PMID:20534669)

PMID:20534669 PMID:16822834

RGD:1580749

NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733

Sry

sex determining region Y

IMP

RGD

PMID:15464265

RGD:1598776

NCBI chr Y:441,525...442,037

Stat1

signal transducer and activator of transcription 1

RGD

PMID:16648019

RGD:2298581

NCBI chr 9:49,419,561...49,459,969
Ensembl chr 9:49,419,340...49,588,540

Stat3

signal transducer and activator of transcription 3

enables

(PMID:16801560)

PMID:16801560 PMID:16648019

RGD:2298581

NCBI chr10:85,811,206...85,863,057
Ensembl chr10:85,811,218...85,863,057

Stat4

signal transducer and activator of transcription 4

enables

(PMID:11894097)

PMID:11894097 PMID:16648019

RGD:2298581

NCBI chr 9:49,472,660...49,588,540
Ensembl chr 9:49,419,340...49,588,540

Stat5a

signal transducer and activator of transcription 5A

enables

(PMID:12393611)

PMID:12393611 PMID:11064147

RGD:1624963

NCBI chr10:85,785,537...85,809,869
Ensembl chr10:85,785,537...85,809,866

Stat5b

signal transducer and activator of transcription 5B

RGD

PMID:11064147

RGD:1624963

NCBI chr10:85,704,841...85,775,856
Ensembl chr10:85,705,670...85,775,668

Stat6

signal transducer and activator of transcription 6

enables

IMP
ISO
IDA

(PMID:15659391)

PMID:15659391 PMID:15584925 PMID:16648019

RGD:2298576, RGD:2298581

NCBI chr 7:63,480,229...63,497,551
Ensembl chr 7:63,479,642...63,498,495

Suz12

SUZ12 polycomb repressive complex 2 subunit

enables

(PMID:20956546)

PMID:20956546

NCBI chr10:64,967,035...65,012,916
Ensembl chr10:64,966,967...65,012,738

Tbx1

T-box transcription factor 1

enables

(PMID:11111039), (PMID:22095455)

PMID:11111039 PMID:22095455

NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380

Tbx2

T-box transcription factor 2

enables

(PMID:11111039)

PMID:11111039

NCBI chr10:70,679,670...70,688,868
Ensembl chr10:70,679,518...70,688,529

Tbx21

T-box transcription factor 21

enables

(PMID:23332764)

NCBI chr10:82,082,322...82,098,831
Ensembl chr10:82,082,322...82,098,831

Tbx3

T-box transcription factor 3

enables

GO_REF:0000024
(PMID:11689487)

PMID:11689487

GO_REF:0000024

NCBI chr12:36,879,924...36,894,849
Ensembl chr12:36,881,445...36,893,708

Tbx5

T-box transcription factor 5

enables

GO_REF:0000024
(PMID:11431700), (PMID:12499378)

PMID:11431700 PMID:12499378

GO_REF:0000024

NCBI chr12:36,686,344...36,739,253
Ensembl chr12:36,688,014...36,734,885

Tbxt

T-box transcription factor T

enables

(PMID:11071760), (PMID:16801560), (PMID:7588606), (PMID:8344258)

PMID:7588606 PMID:8344258 PMID:11071760 PMID:16801560

NCBI chr 1:52,298,104...52,309,813
Ensembl chr 1:52,298,099...52,305,864

Tcf3

transcription factor 3

enables

MGI:98510 (PMID:12070084), (PMID:16428437), (PMID:17938243), (PMID:18388149)

PMID:12070084 PMID:16428437 PMID:17938243 PMID:18388149

NCBI chr 7:9,280,571...9,302,315
Ensembl chr 7:9,280,571...9,302,314

Tcf7l2

transcription factor 7 like 2

enables

(PMID:14661054), (PMID:16532032)
(PMID:9488439)

PMID:9488439 PMID:14661054 PMID:16532032

NCBI chr 1:254,785,956...254,978,967
Ensembl chr 1:254,786,091...254,978,967

Tead4

TEA domain transcription factor 4

enables

(PMID:22529382)

PMID:22529382

NCBI chr 4:161,474,122...161,572,837
Ensembl chr 4:161,497,851...161,572,323

Tef

TEF transcription factor, PAR bZIP family member

RGD

PMID:1916262

RGD:70036

NCBI chr 7:113,317,191...113,341,783
Ensembl chr 7:113,317,283...113,341,783

Tfam

transcription factor A, mitochondrial

enables

(PMID:29445193)

PMID:29445193

NCBI chr20:17,356,243...17,368,293
Ensembl chr20:17,356,197...17,368,292

Tfap2a

transcription factor AP-2 alpha

enables

(PMID:8321221)
(PMID:12586840), (PMID:1998122)

PMID:1998122 PMID:8321221 PMID:12586840 PMID:16806101

RGD:5133260

NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507

Tfap2b

transcription factor AP-2 beta

enables

(PMID:11505339), (PMID:12169688)
GO_REF:0000024

PMID:11505339 PMID:12169688

GO_REF:0000024

NCBI chr 9:21,786,251...21,816,054
Ensembl chr 9:21,786,258...21,814,520

Tfap4

transcription factor AP-4

enables

(PMID:2123466)

PMID:2123466

NCBI chr10:11,001,338...11,019,386
Ensembl chr10:11,002,911...11,019,386

Thap1

THAP domain containing 1

enables

ISS
IEA
ISO

GO_REF:0000024
GO_REF:0000104
(PMID:15863623), (PMID:17003378), (PMID:18073205), (PMID:19182804), (PMID:20010837)

PMID:15863623 PMID:17003378 PMID:18073205 PMID:19182804 PMID:20010837

GO_REF:0000024 GO_REF:0000104

NCBI chr16:65,905,348...65,909,942
Ensembl chr16:65,904,230...65,909,942

Thra

thyroid hormone receptor alpha

enables

GO_REF:0000002

InterPro
RGD

PMID:8407924

GO_REF:0000002, RGD:1580108

NCBI chr10:83,701,885...83,729,408
Ensembl chr10:83,700,755...83,729,936

Thra_v1

thyroid hormone receptor alpha, variant 1

RGD

thyroid hormone receptor alpha, variant 2

RGD

thyroid hormone receptor beta

enables

GO_REF:0000002

GO_REF:0000002

NCBI chr15:7,685,180...8,031,920
Ensembl chr15:7,685,180...7,882,916

Tlx2

T-cell leukemia homeobox 2

enables

(PMID:10869550)

PMID:10869550

NCBI chr 4:115,573,736...115,576,097
Ensembl chr 4:115,573,799...115,575,642

Top2a

DNA topoisomerase II alpha

RGD

PMID:11334111

RGD:1580614

NCBI chr10:83,945,731...83,976,874
Ensembl chr10:83,945,735...83,976,874

tumor protein p53

RGD

NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524

Tp53bp1

tumor protein p53 binding protein 1

enables

(PMID:23241889)

PMID:23241889

NCBI chr 3:108,166,574...108,270,229
Ensembl chr 3:108,169,980...108,269,822

Tp63

tumor protein p63

enables

(PMID:18256694)

PMID:18256694

NCBI chr11:74,838,858...75,049,764
Ensembl chr11:74,838,859...75,049,398

tumor protein p73

RGD

NCBI chr 5:164,621,377...164,703,958
Ensembl chr 5:164,621,377...164,681,128

Trim24

tripartite motif-containing 24

enables

(PMID:18026104)

PMID:18026104

NCBI chr 4:66,567,342...66,692,029
Ensembl chr 4:66,566,686...66,717,241

Tsn

translin

contributes_to

RGD

PMID:9681436

RGD:634412

NCBI chr13:29,366,405...29,377,251
Ensembl chr13:29,364,110...29,377,599

Tsnax

translin-associated factor X

contributes_to

RGD

PMID:9681436

RGD:634412

NCBI chr19:52,975,848...52,989,886
Ensembl chr19:52,975,659...52,989,878

Usf1

upstream transcription factor 1

enables

(PMID:2249772), (PMID:8576131)

PMID:2249772 PMID:8576131 PMID:17408383

RGD:1626707

NCBI chr13:83,845,230...83,854,875
Ensembl chr13:83,822,035...83,854,885

Usf2

upstream transcription factor 2, c-fos interacting

enables

(PMID:8576131)

PMID:8576131 PMID:17408383

RGD:1626707

NCBI chr 1:86,174,703...86,185,942
Ensembl chr 1:86,174,703...86,185,617

vitamin D receptor

RGD

NCBI chr 7:128,987,981...129,037,677
Ensembl chr 7:128,987,981...129,037,677

Ventx

VENT homeobox

enables

(PMID:23332764)

NCBI chr X:86,483,893...86,484,900
Ensembl chr X:86,483,893...86,484,954

Wt1

WT1 transcription factor

enables

IDA
ISS
ISO

GO_REF:0000024
(PMID:1662794), (PMID:25258363), (PMID:7720589), (PMID:8119964)

PMID:1662794 PMID:7720589 PMID:8119964 PMID:25258363 PMID:11071895

GO_REF:0000024, RGD:727305

NCBI chr 3:91,566,540...91,613,653
Ensembl chr 3:91,567,001...91,613,643

Xbp1

X-box binding protein 1

enables

(PMID:8657566)

PMID:8657566 PMID:15486293

RGD:2326004

NCBI chr14:80,390,629...80,395,713
Ensembl chr14:80,390,643...80,395,693

Ybx1

Y box binding protein 1

RGD

PMID:16278212

RGD:1580627

NCBI chr 5:132,882,137...132,898,885
Ensembl chr 5:132,882,145...132,898,862

Yy1

YY1 transcription factor

enables

(PMID:23942234)

PMID:23942234 PMID:10713133

RGD:9588247

NCBI chr 6:127,706,739...127,736,499
Ensembl chr 6:127,707,596...127,732,747

Yy2

YY2 transcription factor

enables

(PMID:23332764)

NCBI chr X:37,438,425...37,442,047
Ensembl chr X:37,410,811...37,464,430

Zbtb14

zinc finger and BTB domain containing 14

enables

(PMID:17714511)

PMID:17714511

NCBI chr 9:109,333,440...109,338,646
Ensembl chr 9:109,331,028...109,338,632

Zbtb18

zinc finger and BTB domain containing 18

enables

(PMID:9756912)
GO_REF:0000024

PMID:9756912

GO_REF:0000024

NCBI chr13:89,439,501...89,447,958
Ensembl chr13:89,439,420...89,448,862

Zbtb33

zinc finger and BTB domain containing 33

enables

(PMID:20403812)

PMID:20403812

NCBI chr X:116,963,337...116,970,547
Ensembl chr X:116,963,347...116,971,023

Zbtb4

zinc finger and BTB domain containing 4

enables

(PMID:20403812)

PMID:20403812

NCBI chr10:54,480,698...54,501,492
Ensembl chr10:54,485,071...54,501,492

Zbtb49

zinc finger and BTB domain containing 49

enables

(PMID:25245946)

PMID:25245946

NCBI chr14:72,590,692...72,612,404
Ensembl chr14:72,590,708...72,612,404

Zbtb7a

zinc finger and BTB domain containing 7a

enables

(PMID:15662416)

PMID:15662416

NCBI chr 7:8,561,015...8,578,243
Ensembl chr 7:8,563,779...8,576,539

Zeb1

zinc finger E-box binding homeobox 1

RGD

PMID:15226419

RGD:2325878

NCBI chr17:51,948,948...52,116,018
Ensembl chr17:51,948,948...52,115,214

Zfp105

zinc finger protein 105

enables

(PMID:8477855)
GO_REF:0000024

PMID:8477855

GO_REF:0000024

NCBI chr 8:122,567,229...122,578,696
Ensembl chr 8:122,567,214...122,578,692

Zfp110

zinc finger protein 110

enables

(PMID:21170338)

PMID:21170338

NCBI chr 1:73,445,303...73,461,112
Ensembl chr 1:73,445,336...73,461,086

Zfp131

zinc finger protein 131

enables

(PMID:20303951)

PMID:20303951

NCBI chr 2:51,722,774...51,753,662
Ensembl chr 2:51,725,541...51,753,639

Zfp148

zinc finger protein 148

enables

(PMID:12771217)

PMID:12771217

NCBI chr11:67,276,455...67,385,803
Ensembl chr11:67,281,707...67,385,772

Zfp174

zinc finger protein 174

enables

(PMID:28473536)

NCBI chr10:11,666,580...11,676,328
Ensembl chr10:11,669,913...11,676,312

Zfp24

zinc finger protein 24

enables

(PMID:11532988)
(PMID:18685786)
GO_REF:0000024

PMID:11532988 PMID:18685786

GO_REF:0000024

NCBI chr18:15,295,687...15,307,319
Ensembl chr18:15,298,290...15,306,799

Zfp263

zinc finger protein 263

enables

(PMID:28473536)

NCBI chr10:11,764,424...11,774,324
Ensembl chr10:11,764,427...11,771,235

Zfp281

zinc finger protein 281

enables

(PMID:10405178), (PMID:12771217)
GO_REF:0000024

PMID:10405178 PMID:12771217

GO_REF:0000024

NCBI chr13:48,096,103...48,104,265
Ensembl chr13:48,037,286...48,104,888

Zfp316

zinc finger protein 316

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr12:11,294,445...11,313,841
Ensembl chr12:11,293,980...11,312,177

Zfp382

zinc finger protein 382

enables

PMID:11154279

NTNU_SB

PMID:11154279

RGD:12790641

NCBI chr 1:85,377,614...85,400,832
Ensembl chr 1:85,377,484...85,399,667

Zfp384

zinc finger protein 384

RGD

PMID:10669742

RGD:1299381

NCBI chr 4:157,810,263...157,840,052
Ensembl chr 4:157,810,352...157,839,766

Zfp42

zinc finger protein 42

enables

(PMID:21530438)

PMID:21530438

NCBI chr16:48,836,463...48,845,443
Ensembl chr16:48,836,648...48,845,401

Zfp423

zinc finger protein 423

enables

IDA
ISO
IBA
IEA

MGI:2671784 (PMID:27727273)
GO_REF:0000033
GO_REF:0000107

PMID:27727273 PMID:9774661

GO_REF:0000033 GO_REF:0000107, RGD:704357

NCBI chr19:19,111,213...19,407,373
Ensembl chr19:19,110,238...19,407,373

Zfp438

zinc finger protein 438

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr17:52,426,221...52,547,472
Ensembl chr17:52,426,221...52,547,472

Zfp451

zinc finger protein 451

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr 9:35,985,441...36,040,991
Ensembl chr 9:35,985,443...36,040,652

Zfp523

zinc finger protein 523

enables

(PMID:10893243)

PMID:10893243

NCBI chr20:6,234,884...6,266,512
Ensembl chr20:6,243,582...6,266,511

Zfp600

zinc finger protein 600

enables

(PMID:20585888)

zinc finger protein 711

enables

(PMID:20346720)

PMID:20346720

NCBI chr X:77,646,300...77,679,398
Ensembl chr X:77,646,558...77,678,045

Zfp787

zinc finger protein 787

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr 1:67,745,702...67,771,132
Ensembl chr 1:67,758,757...67,771,132

Zglp1

zinc finger, GATA-like protein 1

enables

GO_REF:0000002

GO_REF:0000002

NCBI chr 8:19,599,871...19,604,762
Ensembl chr 8:19,599,998...19,604,547

Zgpat

zinc finger CCCH-type and G-patch domain containing

enables

(PMID:19644445)
GO_REF:0000024

PMID:19644445

GO_REF:0000024

NCBI chr 3:168,473,836...168,490,380
Ensembl chr 3:168,473,981...168,490,380

Zic3

Zic family member 3

enables

(PMID:17764085)

PMID:17764085

NCBI chr X:136,123,662...136,129,627
Ensembl chr X:136,124,026...136,134,746

Zkscan3

zinc finger with KRAB and SCAN domains 3

enables

(PMID:23434374)

PMID:23434374

NCBI chr17:43,217,168...43,232,828
Ensembl chr17:43,217,222...43,232,827

Zscan10

zinc finger and SCAN domain containing 10

enables

(PMID:19740739)

PMID:19740739

NCBI chr10:12,636,302...12,646,275
Ensembl chr10:12,636,302...12,646,275

C-rich strand telomeric DNA binding

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Nabp2

nucleic acid binding protein 2

NOT|enables

(PMID:25589350)

PMID:25589350

NCBI chr 7:830,949...836,551
Ensembl chr 7:830,949...838,027

cAMP response element binding

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Atf2

activating transcription factor 2

enables

IDA
ISO
IBA
IEA

(PMID:11231009)
GO_REF:0000033
GO_REF:0000107
(PMID:19861239), (PMID:23729669)

PMID:11231009 PMID:19861239 PMID:23729669 PMID:12196528

GO_REF:0000033 GO_REF:0000107, RGD:727574

NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236

Atf7

activating transcription factor 7

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr 7:133,660,491...133,750,902
Ensembl chr 7:133,663,294...133,750,848

Creb1

cAMP responsive element binding protein 1

enables

(PMID:19861239)
(PMID:23729669)
GO_REF:0000033

PMID:19861239 PMID:23729669

GO_REF:0000033

NCBI chr 9:65,903,511...65,972,562
Ensembl chr 9:65,903,547...65,970,816

Creb3l1

cAMP responsive element binding protein 3-like 1

enables

ISS
ISO
IBA

GO_REF:0000024
(PMID:19767743)
GO_REF:0000033

UniProt
RGD
GO_Central

PMID:19767743

GO_REF:0000024 GO_REF:0000033

NCBI chr 3:77,952,589...77,993,513
Ensembl chr 3:77,952,540...77,993,456

Creb3l2

cAMP responsive element binding protein 3-like 2

enables

ISO
IBA
IEA

(PMID:17178827)
(PMID:19767744)
GO_REF:0000033
GO_REF:0000107

PMID:17178827 PMID:19767744

GO_REF:0000033 GO_REF:0000107

NCBI chr 4:65,907,570...66,112,078
Ensembl chr 4:65,907,655...66,023,763

Creb5

cAMP responsive element binding protein 5

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr 4:82,393,091...82,794,320
Ensembl chr 4:82,393,730...82,790,325

E4f1

E4F transcription factor 1

enables

(PMID:14645522)

PMID:14645522

NCBI chr10:13,471,478...13,495,018
Ensembl chr10:13,474,456...13,485,974

Hmga2

high mobility group AT-hook 2

enables

(PMID:14645522)
GO_REF:0000024

PMID:14645522

GO_REF:0000024

NCBI chr 7:55,877,145...55,998,813
Ensembl chr 7:55,880,112...55,994,784

Jdp2

Jun dimerization protein 2

enables

(PMID:11231009)

PMID:11231009

NCBI chr 6:105,261,619...105,302,386
Ensembl chr 6:105,261,373...105,301,485

Jun

Jun proto-oncogene, AP-1 transcription factor subunit

enables

(PMID:19861239)

PMID:19861239

NCBI chr 5:109,894,175...109,897,268
Ensembl chr 5:109,893,145...109,897,656

Nr4a3

nuclear receptor subfamily 4, group A, member 3

enables

GO_REF:0000024
(PMID:23897430)

PMID:23897430

GO_REF:0000024

NCBI chr 5:62,361,588...62,401,489
Ensembl chr 5:62,361,822...62,402,733

Tcf12

transcription factor 12

RGD

PMID:7683670

RGD:729997

NCBI chr 8:72,490,447...72,799,265
Ensembl chr 8:72,492,567...72,799,201

carbohydrate response element binding

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Mlxipl

MLX interacting protein-like

enables

NAS

PMID:20025850

BHF-UCL

PMID:20025850

RGD:8554541

NCBI chr12:21,541,608...21,577,120
Ensembl chr12:21,543,576...21,577,112

centromeric DNA binding

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Cenpc

centromere protein C

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr14:21,988,067...22,046,732
Ensembl chr14:21,988,144...22,055,476

Mlh3

mutL homolog 3

enables

(PMID:16260499)

PMID:16260499

NCBI chr 6:104,881,483...104,917,686
Ensembl chr 6:104,881,483...104,917,728

Msh2

mutS homolog 2

enables

GO_REF:0000107
(PMID:16260499)

PMID:16260499

GO_REF:0000107

NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938

Msh3

mutS homolog 3

enables

(PMID:16260499)

PMID:16260499

NCBI chr 2:23,444,326...23,585,777

cis-regulatory region sequence-specific DNA binding

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Ahr

aryl hydrocarbon receptor

enables

(PMID:23275542)
GO_REF:0000107

PMID:23275542

GO_REF:0000107

NCBI chr 6:52,234,089...52,271,568
Ensembl chr 6:52,234,089...52,271,568

Arnt

aryl hydrocarbon receptor nuclear translocator

enables

(PMID:23275542)

PMID:23275542

NCBI chr 2:182,997,731...183,056,584
Ensembl chr 2:182,997,736...183,056,580

Atf2

activating transcription factor 2

enables

(PMID:2196176)

PMID:2196176

NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236

Ctcf

CCCTC-binding factor

enables

(PMID:28636939)

PMID:28636939

NCBI chr19:33,521,726...33,571,124
Ensembl chr19:33,529,319...33,571,123

Cxxc1

CXXC finger protein 1

RGD

PMID:21814290

RGD:9587757

NCBI chr18:67,813,185...67,818,556
Ensembl chr18:67,813,206...67,818,551

Dmrt1

doublesex and mab-3 related transcription factor 1

enables

(PMID:20616082), (PMID:20951351)

PMID:20616082 PMID:20951351

NCBI chr 1:223,142,859...223,241,333
Ensembl chr 1:223,142,859...223,241,333

E2f1

E2F transcription factor 1

enables

(PMID:15735762)

PMID:15735762

NCBI chr 3:143,064,535...143,075,362
Ensembl chr 3:143,049,478...143,075,361

E2f2

E2F transcription factor 2

enables

(PMID:15735762)

PMID:15735762

NCBI chr 5:148,399,193...148,422,595
Ensembl chr 5:148,399,642...148,421,217

E2f3

E2F transcription factor 3

enables

(PMID:15735762)

PMID:15735762

NCBI chr17:34,601,756...34,679,139
Ensembl chr17:34,601,830...34,676,253

E2f7

E2F transcription factor 7

enables

(PMID:22903062)

PMID:22903062

NCBI chr 7:46,150,533...46,192,739
Ensembl chr 7:46,151,293...46,192,734

E2f8

E2F transcription factor 8

enables

(PMID:22903062)

PMID:22903062

NCBI chr 1:98,565,717...98,584,265
Ensembl chr 1:98,565,717...98,584,098

Ell

elongation factor for RNA polymerase II

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr16:18,843,775...18,891,484
Ensembl chr16:18,843,780...18,891,118

Ell2

elongation factor for RNA polymerase II 2

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr 2:5,189,375...5,258,781
Ensembl chr 2:5,189,971...5,258,781

Ell2l1

elongation factor for RNA polymerase II 2 like 1

enables

GO_REF:0000033

UniProt
GO_Central
Ensembl

GO_REF:0000033

NCBI chr X:145,878,600...145,888,249
Ensembl chr X:145,878,614...145,887,896

Ell3

elongation factor for RNA polymerase II 3

enables

ISS
IBA
IEA

GO_REF:0000024
GO_REF:0000033
GO_REF:0000107

GO_REF:0000024 GO_REF:0000033 GO_REF:0000107

NCBI chr 3:108,413,035...108,417,181
Ensembl chr 3:108,410,448...108,417,132

Ep300

E1A binding protein p300

RGD

PMID:19057620

RGD:2311715

NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088

Epas1

endothelial PAS domain protein 1

enables

(PMID:12464608)

PMID:12464608

NCBI chr 6:7,790,236...7,871,717
Ensembl chr 6:7,790,647...7,871,228

Esrrb

estrogen-related receptor beta

enables

GO_REF:0000024
(PMID:23508100), (PMID:26206133)

PMID:23508100 PMID:26206133

GO_REF:0000024

NCBI chr 6:106,007,701...106,163,136
Ensembl chr 6:106,008,095...106,160,791

Foxn2

forkhead box N2

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr 6:6,018,653...6,065,226
Ensembl chr 6:6,018,879...6,064,278

Foxn3

forkhead box N3

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr 6:118,462,018...118,842,442
Ensembl chr 6:118,466,025...118,842,401

Foxn4

forkhead box N4

enables

(PMID:22323600)
GO_REF:0000033

PMID:22323600

GO_REF:0000033

NCBI chr12:42,336,706...42,359,932
Ensembl chr12:42,340,323...42,359,921

Gata1

GATA binding protein 1

enables

(PMID:20855530)

NCBI chr X:14,529,706...14,537,530
Ensembl chr X:14,529,702...14,537,530

Gata3

GATA binding protein 3

enables

(PMID:19232384)
(PMID:19666510), (PMID:20855530)

PMID:19232384 PMID:19666510 PMID:20855530

NCBI chr17:68,643,760...68,666,000
Ensembl chr17:68,643,873...68,665,391

Gata4

GATA binding protein 4

enables

PMID:20855530

UniProt

RGD:8554432

NCBI chr15:37,459,601...37,531,291
Ensembl chr15:37,459,601...37,505,636

Gata5

GATA binding protein 5

enables

(PMID:20855530)

NCBI chr 3:167,418,563...167,426,751
Ensembl chr 3:167,418,565...167,426,751

Gata6

GATA binding protein 6

enables

PMID:20855530

UniProt

RGD:8554432

NCBI chr18:2,188,121...2,219,532
Ensembl chr18:2,188,121...2,219,532

Hey1

hes-related family bHLH transcription factor with YRPW motif 1

enables

(PMID:18239137)

NCBI chr 2:93,096,605...93,100,316
Ensembl chr 2:93,095,498...93,100,312

Hey2

hes-related family bHLH transcription factor with YRPW motif 2

enables

(PMID:18239137)

NCBI chr 1:26,822,131...26,832,218
Ensembl chr 1:26,822,131...26,832,218

Hif1a

hypoxia inducible factor 1 subunit alpha

enables

(PMID:31368162)

PMID:31368162

NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261

Hmga1

high mobility group AT-hook 1

enables

(PMID:9253416)

PMID:9253416

NCBI chr20:5,611,088...5,618,755
Ensembl chr20:5,611,694...5,618,752

Hmgb2

high mobility group box 2

enables

GO_REF:0000024
(PMID:23495099)

AgBase
RGD

PMID:23495099

GO_REF:0000024

NCBI chr16:32,710,651...32,713,230
Ensembl chr16:32,710,658...32,713,140

Hmgb2l1

high mobility group box 2-like 1

enables

ISS

GO_REF:0000024

AgBase

GO_REF:0000024

NCBI chr11:47,252,583...47,253,646
Ensembl chr11:47,252,569...47,253,669

Hmgb2l2

high mobility group box 2 like 2

enables

ISS

GO_REF:0000024

AgBase

GO_REF:0000024

NCBI chr14:69,045,590...69,046,623
Ensembl chr14:69,045,641...69,046,640

Hnf1b

HNF1 homeobox B

enables

IDA
IEA
ISO

GO_REF:0000107
(PMID:14570708), (PMID:15067314), (PMID:16274963), (PMID:1685988)

PMID:1685988 PMID:14570708 PMID:15067314 PMID:16274963 PMID:1673926

GO_REF:0000107, RGD:729944

NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888

Hnf4a

hepatocyte nuclear factor 4, alpha

RGD

PMID:16640558

RGD:12904755

NCBI chr 3:152,186,787...152,248,320
Ensembl chr 3:152,186,787...152,248,320

Hnrnpk

heterogeneous nuclear ribonucleoprotein K

RGD

PMID:15361071

RGD:10002777

NCBI chr17:6,262,936...6,275,001
Ensembl chr17:6,262,998...6,274,997

Hoxa13

homeo box A13

enables

(PMID:27706137)

PMID:27706137

NCBI chr 4:81,358,956...81,361,091
Ensembl chr 4:81,358,956...81,361,091

Hoxd13

homeo box D13

enables

(PMID:27706137)

PMID:27706137

NCBI chr 3:59,570,647...59,573,963
Ensembl chr 3:59,570,646...59,573,963

Irf4

interferon regulatory factor 4

enables

(PMID:30413670)

PMID:30413670

NCBI chr17:33,721,800...33,742,570
Ensembl chr17:33,721,811...33,740,070

Irf7

interferon regulatory factor 7

enables

(PMID:27129230)

PMID:27129230

NCBI chr 1:196,367,380...196,370,943
Ensembl chr 1:196,367,361...196,370,832

Isl1

ISL LIM homeobox 1

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr 2:48,079,412...48,090,704
Ensembl chr 2:48,080,522...48,095,584

Isl2

ISL LIM homeobox 2

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr 8:55,923,805...55,928,790
Ensembl chr 8:55,923,805...55,928,790

Lef1

lymphoid enhancer binding factor 1

enables

(PMID:15545629)

PMID:15545629

NCBI chr 2:219,666,549...219,779,815
Ensembl chr 2:219,666,592...219,779,794

Lhx1

LIM homeobox 1

enables

(PMID:26494787)

PMID:26494787

NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617

Mef2c

myocyte enhancer factor 2C

enables

(PMID:16140986), (PMID:20399744)

PMID:16140986 PMID:20399744

NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880

Mesp1

mesoderm posterior bHLH transcription factor 1

enables

(PMID:18593560)

PMID:18593560

NCBI chr 1:133,738,357...133,739,875
Ensembl chr 1:133,738,357...133,739,875

Mixl1

Mix paired-like homeobox 1

enables

(PMID:22265737)

PMID:22265737

NCBI chr13:92,422,031...92,426,065
Ensembl chr13:92,422,031...92,426,065

Msx1

msh homeobox 1

enables

(PMID:27741242)

PMID:27741242

NCBI chr14:72,961,036...72,964,970
Ensembl chr14:72,961,148...72,964,966

Mtf1

metal-regulatory transcription factor 1

enables

(PMID:15735762)
(PMID:10931824), (PMID:10952993), (PMID:16886906), (PMID:9582278)

PMID:9582278 PMID:10931824 PMID:10952993 PMID:15735762 PMID:16886906

NCBI chr 5:137,062,319...137,107,136
Ensembl chr 5:137,062,376...137,107,136

MYC proto-oncogene, bHLH transcription factor

enables

(PMID:15511642)

PMID:15511642

NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630

Myod1

myogenic differentiation 1

enables

(PMID:12486129), (PMID:19121967)

PMID:12486129 PMID:19121967

NCBI chr 1:96,884,864...96,887,574
Ensembl chr 1:96,884,948...96,887,554

Myog

myogenin

enables

(PMID:20399744)

PMID:20399744

NCBI chr13:45,745,455...45,748,044
Ensembl chr13:45,745,436...45,748,039

Myt1

myelin transcription factor 1

enables

(PMID:17442045)

PMID:17442045

NCBI chr 3:168,890,466...168,950,341
Ensembl chr 3:168,886,089...168,950,341

Nfe2

nuclear factor, erythroid 2

contributes_to

(PMID:16263792)

PMID:16263792

NCBI chr 7:134,382,758...134,395,364
Ensembl chr 7:134,382,761...134,390,108

nuclear factor I/C

RGD

NCBI chr 7:8,278,210...8,309,936
Ensembl chr 7:8,253,361...8,309,936

Nkx2-2

NK2 homeobox 2

enables

(PMID:19759004)

PMID:19759004

NCBI chr 3:134,619,701...134,630,282
Ensembl chr 3:134,620,039...134,622,411

Notch1

notch receptor 1

enables

(PMID:18239137)

NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531

Notch2

notch receptor 2

enables

GO_REF:0000107
(PMID:18239137)

GO_REF:0000107

NCBI chr 2:185,610,594...185,744,088
Ensembl chr 2:185,610,589...185,744,088

Notch4

notch receptor 4

enables

(PMID:18239137)

NCBI chr20:4,160,362...4,184,466
Ensembl chr20:4,160,445...4,184,465

Nr1d2

nuclear receptor subfamily 1, group D, member 2

enables

GO_REF:0000024
(PMID:19682428), (PMID:23221024)

PMID:19682428 PMID:23221024

GO_REF:0000024

NCBI chr15:7,524,257...7,550,553
Ensembl chr15:7,524,257...7,550,553

Pax2

paired box 2

enables

GO_REF:0000024
(PMID:17785448)
(PMID:19118900)

PMID:17785448 PMID:19118900

GO_REF:0000024

NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321

Pou5f1

POU class 5 homeobox 1

enables

GO_REF:0000024
(PMID:23495099)

AgBase
RGD

PMID:23495099

GO_REF:0000024

NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891

Rad21

RAD21 cohesin complex component

enables

(PMID:28636939)

PMID:28636939

NCBI chr 7:83,287,867...83,314,810
Ensembl chr 7:83,287,870...83,314,817

Runx2

RUNX family transcription factor 2

enables

(PMID:31545469)

PMID:31545469

NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167

Sall1

spalt-like transcription factor 1

enables

(PMID:21062744)

PMID:21062744

NCBI chr19:18,005,782...18,022,705
Ensembl chr19:18,007,503...18,022,705

Scx

scleraxis bHLH transcription factor

enables

(PMID:17430895)

PMID:17430895

NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:108,176,608...108,178,626

Smad3

SMAD family member 3

enables

GO_REF:0000024
(PMID:21947082), (PMID:32141990)

PMID:21947082 PMID:32141990

GO_REF:0000024

NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960

Smc3

structural maintenance of chromosomes 3

enables

(PMID:28636939)

PMID:28636939

NCBI chr 1:252,601,422...252,644,522
Ensembl chr 1:252,601,753...252,644,522

Sox11

SRY-box transcription factor 11

enables

GO_REF:0000024
(PMID:19808959), (PMID:21527504)

PMID:19808959 PMID:21527504

GO_REF:0000024

NCBI chr 6:44,008,333...44,010,354
Ensembl chr 6:44,008,340...44,010,354

Sox5

SRY-box transcription factor 5

enables

PMID:26150426

UniProt

PMID:26150426

RGD:11526869

NCBI chr 4:176,781,375...177,736,833
Ensembl chr 4:176,785,892...177,736,852

Sox6

SRY-box transcription factor 6

enables

PMID:26150426

UniProt

PMID:26150426

RGD:11526869

NCBI chr 1:169,723,306...170,334,846
Ensembl chr 1:169,729,194...170,277,386

Sox8

SRY-box transcription factor 8

enables

(PMID:12732652), (PMID:15102707)

PMID:12732652 PMID:15102707

NCBI chr10:14,584,829...14,589,818
Ensembl chr10:14,584,829...14,589,818

Sox9

SRY-box transcription factor 9

enables

PMID:10805756
(PMID:10805756), (PMID:17525254), (PMID:22500632)
PMID:26150426
GO_REF:0000024

PMID:10805756 PMID:17525254 PMID:22500632 PMID:10805756 PMID:26150426

GO_REF:0000024, RGD:8553866, RGD:11526869

NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994

Sp1

Sp1 transcription factor

enables

(PMID:15511642), (PMID:19943855), (PMID:9705320)

PMID:9705320 PMID:15511642 PMID:19943855

NCBI chr 7:133,541,302...133,571,961
Ensembl chr 7:133,541,491...133,571,961

Sp3

Sp3 transcription factor

enables

(PMID:15511642), (PMID:19943855)

PMID:15511642 PMID:19943855

NCBI chr 3:57,811,855...57,857,150
Ensembl chr 3:57,812,075...57,860,342

Spi1

Spi-1 proto-oncogene

enables

(PMID:28481873), (PMID:30718772), (PMID:31018969), (PMID:31314592)
(PMID:28338898), (PMID:30171019), (PMID:30355733), (PMID:30413670), (PMID:30718772), (PMID:31314592)

PMID:28338898 PMID:28481873 PMID:30171019 PMID:30355733 PMID:30413670 More...

NCBI chr 3:77,059,744...77,093,730
Ensembl chr 3:77,073,012...77,092,393

Tbx19

T-box transcription factor 19

enables

(PMID:23070814)

PMID:23070814

NCBI chr13:77,450,848...77,484,475
Ensembl chr13:77,450,849...77,504,163

Tcf3

transcription factor 3

enables

(PMID:16140986)

PMID:16140986

NCBI chr 7:9,280,571...9,302,315
Ensembl chr 7:9,280,571...9,302,314

Tfap2a

transcription factor AP-2 alpha

enables

(PMID:19943855)

PMID:19943855

NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507

Tfap2b

transcription factor AP-2 beta

enables

(PMID:16373396)

PMID:16373396

NCBI chr 9:21,786,251...21,816,054
Ensembl chr 9:21,786,258...21,814,520

Tfcp2

transcription factor CP2

enables

(PMID:16263792)

PMID:16263792

NCBI chr 7:131,616,777...131,658,995
Ensembl chr 7:131,616,785...131,658,939

Tfdp1

transcription factor Dp-1

enables

(PMID:15448153)

PMID:15448153

NCBI chr16:76,162,040...76,200,871
Ensembl chr16:76,162,043...76,200,817

Tiparp

TCDD-inducible poly(ADP-ribose) polymerase

enables

(PMID:23275542)

PMID:23275542

NCBI chr 2:149,753,682...149,780,327
Ensembl chr 2:149,753,682...149,780,327

Tp53

tumor protein p53

enables

(PMID:10329733)

PMID:10329733

NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524

Tug1

taurine up-regulated 1

enables

(PMID:27760051)

PMID:27760051

NCBI chr14:78,519,894...78,526,927
Ensembl chr14:78,522,506...78,526,927

Twist1

twist family bHLH transcription factor 1

enables

(PMID:27027434)

PMID:27027434

NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653

Uhrf1

ubiquitin-like with PHD and ring finger domains 1

enables

(PMID:10646863)
GO_REF:0000107

PMID:10646863

GO_REF:0000107

NCBI chr 9:1,133,117...1,154,639
Ensembl chr 9:1,134,909...1,154,631

Xbp1

X-box binding protein 1

enables

(PMID:2196176)
GO_REF:0000024

PMID:2196176

GO_REF:0000024

NCBI chr14:80,390,629...80,395,713
Ensembl chr14:80,390,643...80,395,693

Yy1

YY1 transcription factor

enables

(PMID:15329343), (PMID:16260628)

PMID:15329343 PMID:16260628

NCBI chr 6:127,706,739...127,736,499
Ensembl chr 6:127,707,596...127,732,747

Yy2

YY2 transcription factor

enables

(PMID:16260628)

PMID:16260628

NCBI chr X:37,438,425...37,442,047
Ensembl chr X:37,410,811...37,464,430

Zbtb7b

zinc finger and BTB domain containing 7B

enables

(PMID:8702912)

PMID:8702912

NCBI chr 2:174,795,831...174,811,980
Ensembl chr 2:174,797,453...174,814,236

Zfp322a

zinc finger protein 322a

enables

(PMID:24550733)

PMID:24550733

NCBI chr17:41,773,789...41,789,654
Ensembl chr17:41,773,782...41,790,078

Zfp395

zinc finger protein 395

enables

(PMID:11853404)
(PMID:17693064)

PMID:11853404 PMID:17693064

NCBI chr15:39,581,603...39,621,911
Ensembl chr15:39,608,080...39,619,950

Zfp516

zinc finger protein 516

enables

(PMID:25578880)

PMID:25578880

NCBI chr18:76,286,453...76,386,526
Ensembl chr18:76,302,096...76,385,269

Zfp704

zinc finger protein 704

enables

(PMID:17693064)

PMID:17693064

NCBI chr 2:92,171,804...92,356,059
Ensembl chr 2:92,171,496...92,351,282

core promoter sequence-specific DNA binding

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Ago1

argonaute RISC component 1

enables

(PMID:25336585)

PMID:25336585

NCBI chr 5:138,722,111...138,757,118
Ensembl chr 5:138,722,111...138,773,546

Ago2

argonaute RISC catalytic component 2

enables

GO_REF:0000107
(PMID:25336585)

PMID:25336585

GO_REF:0000107

NCBI chr 7:105,018,202...105,105,118
Ensembl chr 7:105,029,120...105,104,974

Drap1

Dr1 associated protein 1

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr 1:202,731,775...202,734,468
Ensembl chr 1:202,731,788...202,734,425

Fendrr

FOXF1 adjacent non-coding developmental regulatory RNA

enables

(PMID:23369715)

PMID:23369715

NCBI chr19:49,127,225...49,152,780
Ensembl chr19:49,121,214...49,153,240

Foxp1

forkhead box P1

enables

(PMID:28218735)

PMID:28218735

NCBI chr 4:131,559,599...132,155,092
Ensembl chr 4:131,564,756...132,112,258

Hdac1

histone deacetylase 1

enables

(PMID:23629966)

PMID:23629966

NCBI chr 5:141,853,992...141,881,057
Ensembl chr 5:141,853,989...141,881,111

ISL LIM homeobox 1

RGD

NCBI chr 2:48,079,412...48,090,704
Ensembl chr 2:48,080,522...48,095,584

Jph2

junctophilin 2

enables

GO_REF:0000024
(PMID:30409805)

PMID:30409805

GO_REF:0000024

NCBI chr 3:151,994,768...152,058,941
Ensembl chr 3:151,994,778...152,058,904

Kcnip3

potassium voltage-gated channel interacting protein 3

enables

(PMID:15746104)

PMID:15746104

NCBI chr 3:114,677,027...114,742,923
Ensembl chr 3:114,677,030...114,743,556

Klf10

KLF transcription factor 10

enables

GO_REF:0000024
(PMID:20070857)
GO_REF:0000107

PMID:20070857

GO_REF:0000024 GO_REF:0000107

NCBI chr 7:69,467,658...69,473,726
Ensembl chr 7:69,465,619...69,473,994

Mmp12

matrix metallopeptidase 12

enables

GO_REF:0000107
(PMID:24784232)

PMID:24784232

GO_REF:0000107

NCBI chr 8:4,581,785...4,591,687
Ensembl chr 8:4,581,785...4,599,611

MYC proto-oncogene, bHLH transcription factor

enables

(PMID:30873824)

PMID:30873824

NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630

Nkx2-1

NK2 homeobox 1

enables

IMP

PMID:9425125

CAFA

PMID:9425125

RGD:12792996

NCBI chr 6:73,996,601...74,001,483
Ensembl chr 6:73,996,601...73,999,791

Npm1

nucleophosmin 1

enables

(PMID:19160485)

PMID:19160485

NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645

Nr3c1

nuclear receptor subfamily 3, group C, member 1

enables

(PMID:17081986)
GO_REF:0000107

PMID:17081986

GO_REF:0000107

NCBI chr18:31,271,681...31,393,320
Ensembl chr18:31,271,681...31,393,375

Polr2a

RNA polymerase II subunit A

enables

(PMID:22723415)

PMID:22723415

NCBI chr10:54,452,438...54,478,486
Ensembl chr10:54,452,441...54,478,455

Snapc3

small nuclear RNA activating complex, polypeptide 3

contributes_to

GO_REF:0000033

GO_REF:0000033

NCBI chr 5:97,817,827...97,868,494
Ensembl chr 5:97,817,947...97,844,650

Taf4

TATA-box binding protein associated factor 4

contributes_to

(PMID:15601843)

PMID:15601843

NCBI chr 3:167,017,992...167,083,413
Ensembl chr 3:167,017,993...167,083,356

Tbp

TATA box binding protein

enables

(PMID:9841876)

PMID:9841876

NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016

Tp53

tumor protein p53

enables

(PMID:23629966)
GO_REF:0000107

PMID:23629966

GO_REF:0000107

NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524

Zbtb17

zinc finger and BTB domain containing 17

enables

(PMID:19160485)

PMID:19160485

NCBI chr 5:153,753,508...153,774,613
Ensembl chr 5:153,753,569...153,774,609

DNA replication origin binding

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Cdc45

cell division cycle 45

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr11:82,185,427...82,210,630
Ensembl chr11:82,185,473...82,210,619

Ddx11

DEAD/H-box helicase 11

enables

(PMID:27477908)

PMID:27477908

NCBI chr 9:105,833,234...105,862,844
Ensembl chr 9:105,833,504...105,862,550

Dhx9

DExH-box helicase 9

enables

(PMID:24990949)

PMID:24990949

NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069

Grwd1

glutamate-rich WD repeat containing 1

enables

ISS
IEA
ISO

GO_REF:0000024
GO_REF:0000107
(PMID:25990725)

UniProt
Ensembl
RGD

PMID:25990725

GO_REF:0000024 GO_REF:0000107

NCBI chr 1:96,301,260...96,306,962
Ensembl chr 1:96,301,261...96,307,201

Kat7

lysine acetyltransferase 7

enables

(PMID:21856198)

PMID:21856198

NCBI chr10:80,221,519...80,255,590
Ensembl chr10:80,221,524...80,255,567

Mcm10

minichromosome maintenance 10 replication initiation factor

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr17:73,263,788...73,288,346
Ensembl chr17:73,266,095...73,287,364

Mcm2

minichromosome maintenance complex component 2

enables

(PMID:12941272)

PMID:12941272

NCBI chr 4:121,346,434...121,360,962
Ensembl chr 4:121,346,434...121,360,847

Mcm5

minichromosome maintenance complex component 5

enables

GO_REF:0000104

UniProt

GO_REF:0000104

NCBI chr19:13,483,030...13,504,389
Ensembl chr19:13,483,066...13,504,389

Orc2

origin recognition complex, subunit 2

enables

IEA
ISO
IBA

GO_REF:0000104
(PMID:12941272)
GO_REF:0000033

UniProt
RGD
GO_Central

PMID:12941272

GO_REF:0000033 GO_REF:0000104

NCBI chr 9:60,001,631...60,038,301
Ensembl chr 9:60,001,910...60,038,195

Orc3

origin recognition complex, subunit 3

enables

GO_REF:0000033

RGD
GO_Central
Ensembl
UniProt

GO_REF:0000033

NCBI chr 5:49,123,758...49,181,552
Ensembl chr 5:49,126,955...49,181,633

Orc4

origin recognition complex, subunit 4

enables

ISO
IBA
IEA
ISS

(PMID:9353276)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024

PMID:9353276

GO_REF:0000024 GO_REF:0000033 GO_REF:0000107

NCBI chr 3:33,290,844...33,334,022
Ensembl chr 3:33,294,355...33,333,824

Orc5

origin recognition complex, subunit 5

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr 4:12,548,007...12,612,611
Ensembl chr 4:12,548,007...12,612,568

Pola1

DNA polymerase alpha 1, catalytic subunit

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr X:58,034,617...58,348,612
Ensembl chr X:58,034,619...58,348,536

double-stranded telomeric DNA binding

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Apex1

apurinic/apyrimidinic endodeoxyribonuclease 1

enables

(PMID:24703901)
GO_REF:0000107

PMID:24703901

GO_REF:0000107

NCBI chr15:24,144,595...24,146,785
Ensembl chr15:24,144,362...24,146,785

Hmbox1

homeobox containing 1

enables

(PMID:23685356)

PMID:23685356

NCBI chr15:39,067,805...39,200,633
Ensembl chr15:39,067,804...39,200,323

Pura

purine rich element binding protein A

enables

(PMID:15777841)
GO_REF:0000107

PMID:15777841

GO_REF:0000107

NCBI chr18:27,885,071...27,905,509
Ensembl chr18:27,884,556...27,905,513

Rad50

RAD50 double strand break repair protein

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr10:37,809,353...37,861,309
Ensembl chr10:37,808,726...37,861,396

Terf1

telomeric repeat binding factor 1

enables

(PMID:1406665)
GO_REF:0000033
(PMID:12768206), (PMID:12782650), (PMID:15608617), (PMID:21852327)

PMID:1406665 PMID:12768206 PMID:12782650 PMID:15608617 PMID:21852327

GO_REF:0000033

NCBI chr 5:3,443,103...3,472,377
Ensembl chr 5:3,443,106...3,472,340

Terf2

telomeric repeat binding factor 2

enables

GO_REF:0000033
(PMID:9326950)
(PMID:18812185), (PMID:21852327), (PMID:28216226)

PMID:9326950 PMID:18812185 PMID:21852327 PMID:28216226

GO_REF:0000033

NCBI chr19:34,976,963...35,005,813
Ensembl chr19:34,977,471...35,005,819

Xrcc5

X-ray repair cross complementing 5

contributes_to

(PMID:10409678)

PMID:10409678

NCBI chr 9:73,955,216...74,044,020
Ensembl chr 9:73,955,216...74,044,018

Xrcc6

X-ray repair cross complementing 6

contributes_to

(PMID:10409678)

PMID:10409678

NCBI chr 7:113,542,992...113,563,762
Ensembl chr 7:113,543,057...113,563,762

Zbtb48

zinc finger and BTB domain containing 48

enables

(PMID:28082411)

PMID:28082411

NCBI chr 5:162,525,234...162,533,604
Ensembl chr 5:162,525,235...162,533,585

dsDNA-RNA triple helix-forming chromatin adaptor activity

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Meg3

maternally expressed 3

enables

(PMID:38456652)

PMID:38456652

NCBI chr 6:128,491,808...128,524,010

E-box binding

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Ahr

aryl hydrocarbon receptor

enables

GO_REF:0000024
(PMID:20106950)

PMID:20106950

GO_REF:0000024

NCBI chr 6:52,234,089...52,271,568
Ensembl chr 6:52,234,089...52,271,568

Ascl1

achaete-scute family bHLH transcription factor 1

enables

(PMID:10903890), (PMID:11736660)

PMID:10903890 PMID:11736660

NCBI chr 7:21,903,136...21,906,003
Ensembl chr 7:21,903,126...21,905,993

Ascl2

achaete-scute family bHLH transcription factor 2

enables

(PMID:14561729)

PMID:14561729

NCBI chr 1:198,148,999...198,151,406
Ensembl chr 1:198,148,999...198,151,406

Atoh1

atonal bHLH transcription factor 1

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr 4:93,912,068...93,914,163
Ensembl chr 4:93,912,068...93,914,154

Atoh7

atonal bHLH transcription factor 7

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr20:25,530,826...25,531,275
Ensembl chr20:25,530,826...25,531,275

Atoh8

atonal bHLH transcription factor 8

enables

(PMID:24236640)
GO_REF:0000033

PMID:24236640

GO_REF:0000033

NCBI chr 4:104,259,992...104,292,168
Ensembl chr 4:104,259,992...104,292,168

Bhlha15

basic helix-loop-helix family, member a15

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr12:10,420,465...10,424,641
Ensembl chr12:10,420,467...10,424,713

Bhlhe22

basic helix-loop-helix family, member e22

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr 2:100,486,400...100,489,510
Ensembl chr 2:100,486,400...100,489,510

Bhlhe23

basic helix-loop-helix family, member e23

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr 3:167,889,009...167,891,223
Ensembl chr 3:167,889,009...167,891,223

Bhlhe40

basic helix-loop-helix family, member e40

enables

IEA
ISO
ISS

GO_REF:0000107
(PMID:12397359), (PMID:15147242), (PMID:17487425), (PMID:30012868)
GO_REF:0000024
(PMID:12397359), (PMID:12624110), (PMID:14672706), (PMID:15193144), (PMID:15560782), (PMID:18411297), (PMID:28797635)

Ensembl
RGD
UniProt

PMID:12397359 PMID:12624110 PMID:14672706 PMID:15147242 PMID:15193144 More...

GO_REF:0000024 GO_REF:0000107

NCBI chr 4:141,618,453...141,624,154
Ensembl chr 4:141,618,476...141,624,774

Bhlhe41

basic helix-loop-helix family, member e41

enables

(PMID:14672706), (PMID:15193144)
(PMID:12397359), (PMID:12657651), (PMID:15147242), (PMID:17487425)
GO_REF:0000107

PMID:12397359 PMID:12657651 PMID:14672706 PMID:15147242 PMID:15193144 More...

GO_REF:0000107

NCBI chr 4:178,834,264...178,838,618
Ensembl chr 4:178,834,271...178,838,468

Bmal1

basic helix-loop-helix ARNT like 1

enables

ISO
IEA
ISS

(PMID:12738229), (PMID:23785138)
(PMID:19605937), (PMID:20106950), (PMID:24736997)
GO_REF:0000107
GO_REF:0000024

PMID:12738229 PMID:19605937 PMID:20106950 PMID:23785138 PMID:24736997

GO_REF:0000024 GO_REF:0000107

NCBI chr 1:167,331,756...167,430,235
Ensembl chr 1:167,331,633...167,430,231

Bmal2

basic helix-loop-helix ARNT like 2

enables

(PMID:12738229)
(PMID:19605937)

PMID:12738229 PMID:19605937

NCBI chr 4:179,699,432...179,747,710
Ensembl chr 4:179,699,502...179,746,949

Ciart

circadian associated repressor of transcription

enables

(PMID:24736997)

Ensembl
RGD
GO_Central
UniProt

PMID:24736997

NCBI chr 2:183,419,819...183,424,845
Ensembl chr 2:183,419,819...183,423,313

Clock

clock circadian regulator

enables

IEA
ISO
IBA
ISS

GO_REF:0000107
(PMID:12738229), (PMID:19605937), (PMID:20106950), (PMID:20430893), (PMID:30012868)
GO_REF:0000033
GO_REF:0000024
(PMID:18411297), (PMID:23785138)

PMID:12738229 PMID:18411297 PMID:19605937 PMID:20106950 PMID:20430893 More...

GO_REF:0000024 GO_REF:0000033 GO_REF:0000107

NCBI chr14:31,908,542...31,992,673
Ensembl chr14:31,908,566...31,990,400

Cry1

cryptochrome circadian regulator 1

enables

(PMID:19129230), (PMID:21768648), (PMID:23133559), (PMID:24385426)

PMID:19129230 PMID:21768648 PMID:23133559 PMID:24385426

NCBI chr 7:18,529,823...18,594,092
Ensembl chr 7:18,529,823...18,594,091

Figla

folliculogenesis specific bHLH transcription factor

contributes_to

UniProtKB:P15923-1 (PMID:15044608)

PMID:15044608

NCBI chr 4:118,432,517...118,436,846
Ensembl chr 4:118,432,765...118,436,690

Gata3

GATA binding protein 3

enables

(PMID:20855495)

PMID:20855495

NCBI chr17:68,643,760...68,666,000
Ensembl chr17:68,643,873...68,665,391

Hand2

heart and neural crest derivatives expressed 2

enables
contributes_to

(PMID:15486975)
(PMID:11812799)
(PMID:20144608)
GO_REF:0000107

PMID:11812799 PMID:15486975 PMID:20144608

GO_REF:0000107

NCBI chr16:32,917,448...32,920,791
Ensembl chr16:32,917,823...32,919,891

Hdac1

histone deacetylase 1

enables

(PMID:24736997)

PMID:24736997

NCBI chr 5:141,853,992...141,881,057
Ensembl chr 5:141,853,989...141,881,111

Hes1

hes family bHLH transcription factor 1

enables

IDA
ISO
IBA
IEA

(PMID:10851137)
GO_REF:0000033
GO_REF:0000107

PMID:10851137 PMID:19670267

GO_REF:0000033 GO_REF:0000107, RGD:9685170

NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192

Hif1a

hypoxia inducible factor 1 subunit alpha

enables

GO_REF:0000107
(PMID:24011070)

PMID:24011070

GO_REF:0000107

NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261

Max

MYC associated factor X

enables

(PMID:16171389)

PMID:16171389

NCBI chr 6:95,636,859...95,662,204
Ensembl chr 6:95,636,858...95,662,137

Mitf

melanocyte inducing transcription factor

enables

GO_REF:0000024
(PMID:23207919)
GO_REF:0000107
(PMID:27889061)

PMID:23207919 PMID:27889061

GO_REF:0000024 GO_REF:0000107

NCBI chr 4:130,409,020...130,621,145
Ensembl chr 4:130,409,217...130,621,145

Mybbp1a

MYB binding protein 1a

enables

GO_REF:0000107
UniProtKB:O08785|UniProtKB:P97784 (PMID:19129230)

PMID:19129230

GO_REF:0000107

NCBI chr10:57,056,897...57,067,258
Ensembl chr10:57,056,874...57,067,255

MYC proto-oncogene, bHLH transcription factor

enables

GO_REF:0000024
(PMID:18818310), (PMID:27791094)
(PMID:19545562)

PMID:18818310 PMID:19545562 PMID:27791094

GO_REF:0000024

NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630

Myod1

myogenic differentiation 1

enables

(PMID:10652346), (PMID:15706034)
GO_REF:0000024

PMID:10652346 PMID:15706034 PMID:11600477

GO_REF:0000024, RGD:9686083

NCBI chr 1:96,884,864...96,887,574
Ensembl chr 1:96,884,948...96,887,554

Myog

myogenin

enables

GO_REF:0000024
(PMID:15706034), (PMID:19783823), (PMID:22847234)
GO_REF:0000107

PMID:15706034 PMID:19783823 PMID:22847234

GO_REF:0000024 GO_REF:0000107

NCBI chr13:45,745,455...45,748,044
Ensembl chr13:45,745,436...45,748,039

Neurod1

neuronal differentiation 1

enables

(PMID:14752053)
(PMID:14697366)
GO_REF:0000033

PMID:14697366 PMID:14752053

GO_REF:0000033

NCBI chr 3:64,359,554...64,363,526
Ensembl chr 3:64,359,395...64,363,649

Neurod2

neuronal differentiation 2

enables

ISS
ISO
IBA
IEA

GO_REF:0000024
(PMID:14697366), (PMID:18214987)
GO_REF:0000033
GO_REF:0000107

UniProt
RGD
GO_Central
Ensembl

PMID:14697366 PMID:18214987

GO_REF:0000024 GO_REF:0000033 GO_REF:0000107

NCBI chr10:83,323,801...83,327,986
Ensembl chr10:83,324,442...83,327,986

Neurod4

neuronal differentiation 4

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr 7:7,090,048...7,102,018
Ensembl chr 7:7,090,045...7,102,030

Neurod6

neuronal differentiation 6

enables

GO_REF:0000033

PMID:14697366 PMID:20102160

GO_REF:0000033

NCBI chr 4:84,846,659...84,849,905
Ensembl chr 4:84,846,231...84,849,999

Neurog1

neurogenin 1

enables

ISS
ISO
IBA

GO_REF:0000024
(PMID:14697366)
GO_REF:0000033
(PMID:20102160)

UniProt
RGD
GO_Central

GO_REF:0000024 GO_REF:0000033

NCBI chr17:8,362,878...8,364,397
Ensembl chr17:8,362,821...8,364,571

Neurog2

neurogenin 2

enables

GO_REF:0000033
(PMID:14697366)

PMID:14697366

GO_REF:0000033

NCBI chr 2:216,092,709...216,095,276
Ensembl chr 2:216,093,363...216,094,154

Neurog3

neurogenin 3

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr20:30,079,780...30,081,262
Ensembl chr20:30,079,780...30,081,262

Nr1d1

nuclear receptor subfamily 1, group D, member 1

enables

IEA
ISO
ISS

GO_REF:0000107
(PMID:18565334)
GO_REF:0000024

Ensembl
RGD
UniProt

PMID:18565334

GO_REF:0000024 GO_REF:0000107

NCBI chr10:83,728,348...83,735,562
Ensembl chr10:83,728,318...83,735,705

Olig1

oligodendrocyte transcription factor 1

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr11:30,514,379...30,516,521
Ensembl chr11:30,514,379...30,516,521

Olig2

oligodendrocyte transcription factor 2

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr11:30,475,510...30,478,886
Ensembl chr11:30,475,398...30,480,152

Olig3

oligodendrocyte transcription factor 3

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr 1:14,081,259...14,083,336
Ensembl chr 1:14,081,328...14,082,149

Per1

period circadian regulator 1

enables

(PMID:18411297)
GO_REF:0000107

PMID:18411297

GO_REF:0000107

NCBI chr10:53,800,126...53,814,963
Ensembl chr10:53,805,535...53,814,431

Pparg

peroxisome proliferator-activated receptor gamma

enables

GO_REF:0000024
(PMID:19041764)

PMID:19041764

GO_REF:0000024

NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468

Prmt5

protein arginine methyltransferase 5

enables

(PMID:23133559)

PMID:23133559

NCBI chr15:27,968,893...27,978,291
Ensembl chr15:27,968,910...27,978,296

Ptf1a

pancreas associated transcription factor 1a

enables

(PMID:22232429)

PMID:22232429

NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135

Scx

scleraxis bHLH transcription factor

contributes_to
enables

(PMID:10775504)
(PMID:19828133)
(PMID:20059955), (PMID:7743923)

PMID:7743923 PMID:10775504 PMID:19828133 PMID:20059955

NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:108,176,608...108,178,626

Snai1

snail family transcriptional repressor 1

enables

(PMID:11912130)

PMID:11912130

NCBI chr 3:156,248,479...156,252,969
Ensembl chr 3:156,248,485...156,252,969

Snai2

snail family transcriptional repressor 2

enables

(PMID:11912130), (PMID:15737616), (PMID:16707493)

PMID:11912130 PMID:15737616 PMID:16707493

NCBI chr11:86,182,788...86,186,203
Ensembl chr11:86,181,909...86,186,200

Spz1

spermatogenic leucine zipper 1

enables

(PMID:30541061)

PMID:30541061

NCBI chr 2:23,796,741...23,798,337
Ensembl chr 2:23,796,742...23,798,337

Srebf2

sterol regulatory element binding transcription factor 2

enables

GO_REF:0000107
(PMID:15358760)

PMID:15358760

GO_REF:0000107

NCBI chr 7:113,663,202...113,720,850
Ensembl chr 7:113,663,202...113,720,848

Tal1

TAL bHLH transcription factor 1, erythroid differentiation factor

enables

(PMID:20855495)
(PMID:18550854)

PMID:18550854 PMID:20855495

NCBI chr 5:128,586,776...128,600,976
Ensembl chr 5:128,587,701...128,600,976

Tcf12

transcription factor 12

enables

GO_REF:0000024
(PMID:18214987)

PMID:18214987

GO_REF:0000024

NCBI chr 8:72,490,447...72,799,265
Ensembl chr 8:72,492,567...72,799,201

Tcf15

transcription factor 15

enables

(PMID:15226298)

PMID:15226298

NCBI chr 3:140,638,984...140,644,766
Ensembl chr 3:140,638,984...140,644,766

Tcf21

transcription factor 21

enables

GO_REF:0000024
UniProtKB:O35437 (PMID:15919722), (PMID:9545521)

PMID:9545521 PMID:15919722

GO_REF:0000024

NCBI chr 1:22,701,353...22,704,212
Ensembl chr 1:22,701,353...22,704,202

Tcf3

transcription factor 3

contributes_to
enables

IDA
ISO
IEA
ISS

PMID:19828133
(PMID:11812799)
UniProtKB:O35437 (PMID:15226298), (PMID:18214987), (PMID:30541061), (PMID:9545521)
UniProtKB:Q6QHK4 (PMID:15044608)
GO_REF:0000107
(PMID:10652346), (PMID:7933101)
GO_REF:0000024
(PMID:10775504)

PMID:7933101 PMID:9545521 PMID:10652346 PMID:10775504 PMID:11812799 More...

GO_REF:0000024 GO_REF:0000107, RGD:8553796

NCBI chr 7:9,280,571...9,302,315
Ensembl chr 7:9,280,571...9,302,314

Tcf4

transcription factor 4

enables

GO_REF:0000024
(PMID:18214987), (PMID:8978694)

PMID:8978694 PMID:18214987

GO_REF:0000024

NCBI chr18:62,941,739...63,288,126
Ensembl chr18:62,943,782...63,284,425

Tfap4

transcription factor AP-4

enables

(PMID:11171123), (PMID:12663744), (PMID:18818310), (PMID:19505873), (PMID:7933101)

PMID:7933101 PMID:11171123 PMID:12663744 PMID:18818310 PMID:19505873

NCBI chr10:11,001,338...11,019,386
Ensembl chr10:11,002,911...11,019,386

Tfe3

transcription factor binding to IGHM enhancer 3

enables

(PMID:20713358)

PMID:20713358

NCBI chr X:14,729,547...14,742,830
Ensembl chr X:14,729,550...14,742,571

Twist1

twist family bHLH transcription factor 1

enables

(PMID:17332325), (PMID:20804746)
(PMID:16502419), (PMID:20804746), (PMID:24011070)

PMID:16502419 PMID:17332325 PMID:20804746 PMID:24011070

NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653

Zeb1

zinc finger E-box binding homeobox 1

enables

IEA
ISO
ISS

GO_REF:0000107
(PMID:20346398), (PMID:20713358)
GO_REF:0000024

Ensembl
RGD
UniProt

PMID:20346398 PMID:20713358

GO_REF:0000024 GO_REF:0000107

NCBI chr17:51,948,948...52,116,018
Ensembl chr17:51,948,948...52,115,214

estrogen response element binding

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

androgen receptor

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr X:63,104,771...63,273,934
Ensembl chr X:63,104,771...63,273,925

Esr1

estrogen receptor 1

enables

ISO
IBA
IEA

(PMID:15345745), (PMID:15831516), (PMID:17975005), (PMID:9841876)
GO_REF:0000033
GO_REF:0000107

PMID:9841876 PMID:15345745 PMID:15831516 PMID:17975005

GO_REF:0000033 GO_REF:0000107

NCBI chr 1:41,106,335...41,499,104
Ensembl chr 1:41,210,475...41,495,002

Esr2

estrogen receptor 2

enables

IDA
IBA
IEA
ISO

GO_REF:0000033
GO_REF:0000107
(PMID:15345745), (PMID:19126643)
(PMID:24033289)

GO_Central
Ensembl
RGD

PMID:15345745 PMID:19126643 PMID:24033289 PMID:9600083

GO_REF:0000033 GO_REF:0000107, RGD:728646

NCBI chr 6:94,858,438...94,909,630
Ensembl chr 6:94,809,547...94,908,919

Esrra

estrogen related receptor, alpha

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr 1:204,104,100...204,114,182
Ensembl chr 1:204,104,101...204,114,268

Esrrb

estrogen-related receptor beta

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr 6:106,007,701...106,163,136
Ensembl chr 6:106,008,095...106,160,791

Esrrg

estrogen-related receptor gamma

enables

GO_REF:0000033
(PMID:10428842)

PMID:10428842

GO_REF:0000033

NCBI chr13:99,167,656...99,788,016
Ensembl chr13:99,564,669...99,783,397

Nr3c1

nuclear receptor subfamily 3, group C, member 1

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr18:31,271,681...31,393,320
Ensembl chr18:31,271,681...31,393,375

Nr3c2

nuclear receptor subfamily 3, group C, member 2

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr19:30,715,634...31,059,885
Ensembl chr19:30,715,648...31,059,885

Nr6a1

nuclear receptor subfamily 6, group A, member 1

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr 3:22,495,109...22,683,132
Ensembl chr 3:22,496,943...22,683,131

Pgr

progesterone receptor

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr 8:6,072,673...6,131,552
Ensembl chr 8:6,072,673...6,131,344

Trim24

tripartite motif-containing 24

enables

(PMID:21164480)

PMID:21164480

NCBI chr 4:66,567,342...66,692,029
Ensembl chr 4:66,566,686...66,717,241

G-rich strand telomeric DNA binding

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Ctc1

CST telomere replication complex component 1

enables

(PMID:22763445)

PMID:22763445

NCBI chr10:53,714,614...53,735,298
Ensembl chr10:53,714,644...53,735,298

Hnrnpa1

heterogeneous nuclear ribonucleoprotein A1

enables

(PMID:23935072)
GO_REF:0000107

PMID:23935072

GO_REF:0000107

NCBI chr 7:134,375,318...134,381,610
Ensembl chr 7:134,375,150...134,381,609

Hnrnpa2b1

heterogeneous nuclear ribonucleoprotein A2/B1

enables

PMID:23184978

BHF-UCL

PMID:23184978

RGD:11567256

NCBI chr 4:80,534,659...80,545,297
Ensembl chr 4:80,534,651...80,545,249

Nabp2

nucleic acid binding protein 2

enables

(PMID:25589350)
GO_REF:0000107

PMID:25589350

GO_REF:0000107

NCBI chr 7:830,949...836,551
Ensembl chr 7:830,949...838,027

Pot1

protection of telomeres 1

enables

(PMID:17237768), (PMID:21852327), (PMID:22763445)
GO_REF:0000033

PMID:17237768 PMID:21852327 PMID:22763445

GO_REF:0000033

NCBI chr 4:54,205,330...54,263,137
Ensembl chr 4:54,205,332...54,263,042

Pot1b

protection of telomeres 1B

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr 9:9,670,355...9,728,624
Ensembl chr 9:9,670,362...9,728,532

Rpa1

replication protein A1

enables

(PMID:16973897), (PMID:24747047), (PMID:26041456)

PMID:16973897 PMID:24747047 PMID:26041456

NCBI chr10:60,148,869...60,199,970
Ensembl chr10:60,148,793...60,199,949

Rpa2

replication protein A2

enables

(PMID:24747047)

PMID:24747047

NCBI chr 5:144,976,789...144,989,445
Ensembl chr 5:144,976,748...144,987,350

Terf1

telomeric repeat binding factor 1

enables

(PMID:17694070)

PMID:17694070

NCBI chr 5:3,443,103...3,472,377
Ensembl chr 5:3,443,106...3,472,340

Terf2

telomeric repeat binding factor 2

enables

(PMID:17694070)
GO_REF:0000033

PMID:17694070

GO_REF:0000033

NCBI chr19:34,976,963...35,005,813
Ensembl chr19:34,977,471...35,005,819

intronic transcription regulatory region sequence-specific DNA binding

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Bcl6

BCL6, transcription repressor

enables

(PMID:24863065)

PMID:24863065

NCBI chr11:76,854,090...76,877,389
Ensembl chr11:76,854,090...76,877,389

Grhl2

grainyhead-like transcription factor 2

enables

(PMID:20978075)

PMID:20978075

NCBI chr 7:68,400,287...68,530,269
Ensembl chr 7:68,400,477...68,530,258

Nkx2-1

NK2 homeobox 1

enables

GO_REF:0000024
(PMID:22955271)
GO_REF:0000107
(PMID:23143308)

PMID:22955271 PMID:23143308

GO_REF:0000024 GO_REF:0000107

NCBI chr 6:73,996,601...74,001,483
Ensembl chr 6:73,996,601...73,999,791

Thra

thyroid hormone receptor alpha

RGD

PMID:20368265

RGD:2324624

NCBI chr10:83,701,885...83,729,408
Ensembl chr10:83,700,755...83,729,936

methyl-CpG binding

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Cdx1

caudal type homeo box 1

enables

ISO
ISS
IEA

(PMID:28473536)
GO_REF:0000024
GO_REF:0000107

RGD
UniProt
Ensembl

GO_REF:0000024 GO_REF:0000107

NCBI chr18:54,472,587...54,490,913
Ensembl chr18:54,473,444...54,490,814

Cdx2

caudal type homeo box 2

enables

(PMID:28473536)

NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142

Chtop

chromatin target of PRMT1

enables

(PMID:25284789)
GO_REF:0000024

PMID:25284789

GO_REF:0000024

NCBI chr 2:175,981,266...175,992,820
Ensembl chr 2:175,981,271...175,992,748

Cxxc4

CXXC finger protein 4

enables

(PMID:29276034)
GO_REF:0000024

PMID:29276034

GO_REF:0000024

NCBI chr 2:222,664,148...222,689,365
Ensembl chr 2:222,664,771...222,689,365

Cxxc5

CXXC finger protein 5

enables

ISO
IBA
ISS

(PMID:29276034)
GO_REF:0000033
GO_REF:0000024

RGD
GO_Central
UniProt

PMID:29276034

GO_REF:0000024 GO_REF:0000033

NCBI chr18:27,427,591...27,458,579
Ensembl chr18:27,427,230...27,458,673

Cxxc5l1

CXXC finger protein 5 like 1

enables

GO_REF:0000033

GO_REF:0000033

NCBI chr X:126,891,110...126,892,526
Ensembl chr X:126,891,293...126,892,210

Dnmt1

DNA methyltransferase 1

enables

GO_REF:0000107
(PMID:20573698)

PMID:20573698

GO_REF:0000107

NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659

Erh

ERH, mRNA splicing and mitosis factor

enables

(PMID:25284789)

PMID:25284789

NCBI chr 6:100,280,933...100,291,200
Ensembl chr 6:100,280,930...100,291,210

Hoxb13

homeo box B13

enables

(PMID:28473536)

NCBI chr10:81,160,498...81,162,777
Ensembl chr10:81,160,498...81,162,777

Lhx4

LIM homeobox 4

enables

(PMID:28473536)

NCBI chr13:67,877,109...67,917,219
Ensembl chr13:67,877,109...67,927,003

Lrwd1

leucine-rich repeats and WD repeat domain containing 1

enables

(PMID:21029866)

PMID:21029866

NCBI chr12:20,530,035...20,543,078
Ensembl chr12:20,530,012...20,549,536

Mbd1

methyl-CpG binding domain protein 1

enables