Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:pigmentation
go back to main search page
Accession:GO:0043473 term browser browse the term
Definition:The accumulation of pigment in an organism, tissue or cell, either by increased deposition or by increased number of cells.
Synonyms:only_in_taxon: NCBITaxon:131567 ! cellular organisms



show annotations for term's descendants           Sort by:
pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within ISO (PMID:9931340) RGD PMID:9931340 NCBI chr 2:27,331,241...27,535,683
Ensembl chr 2:25,600,040...25,800,935
JBrowse link
G Arcn1 archain 1 acts_upstream_of_or_within ISO MGI:2671790 (PMID:20502676) RGD PMID:20502676 NCBI chr 8:45,057,617...45,082,224
Ensembl chr 8:45,057,619...45,082,247
JBrowse link
G Asip agouti signaling protein acts_upstream_of_or_within ISO MGI:1856798 (PMID:17247639) RGD PMID:17247639 NCBI chr 3:143,473,584...143,561,170
Ensembl chr 3:143,555,696...143,561,171
JBrowse link
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO MGI:1856096|MGI:1856097|MGI:1856098|MGI:1856099|MGI:1856100|MGI:1856101|MGI:1856322|MGI:1856323|MGI:1856324|MGI:1856466|MGI:1856479|MGI:2447843|MGI:3588774 (PMID:16338116), (PMID:1752214), (PMID:2473662), (PMID:4561716), (PMID:4670054), (PMID:4858102) RGD PMID:1752214 PMID:2473662 PMID:4561716 PMID:4670054 PMID:4858102 More... MGI:61157 MGI:61250 MGI:61313 MGI:63033 MGI:63057 MGI:64387 MGI:72704 NCBI chr  X:75,159,635...75,267,094
Ensembl chr  X:71,094,202...71,198,354
JBrowse link
G Atrn attractin involved_in
acts_upstream_of_or_within
IMP
ISO
IEA
PMID:11209055
MGI:1856081|MGI:1856082 (PMID:18064672)
GO_REF:0000107
RGD
Ensembl
PMID:18064672 PMID:11209055 GO_REF:0000107 MGI:48643, RGD:67998 NCBI chr 3:138,563,271...138,697,360
Ensembl chr 3:118,110,229...118,244,322
JBrowse link
G Bcl2 BCL2, apoptosis regulator involved_in ISO (PMID:8402909) RGD PMID:8402909 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 involved_in
acts_upstream_of_or_within
ISO (PMID:16385460)
MGI:1857021 (PMID:15265785), (PMID:2513223), (PMID:4031470), (PMID:7089489)
RGD PMID:2513223 PMID:4031470 PMID:7089489 PMID:15265785 PMID:16385460 NCBI chr 1:79,155,873...79,158,247
Ensembl chr 1:79,155,693...79,158,505
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within ISO MGI:1856982 (PMID:2379821), (PMID:7089489) RGD PMID:2379821 PMID:7089489 NCBI chr 3:130,269,979...130,280,109
Ensembl chr 3:109,816,366...109,828,308
JBrowse link
G Cd63 Cd63 molecule involved_in ISO (PMID:21962903) RGD PMID:21962903 NCBI chr 7:1,325,108...1,340,447
Ensembl chr 7:1,325,103...1,399,178
JBrowse link
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 involved_in ISO
ISS
(PMID:11434569), (PMID:8901575)
(PMID:8901575)
GO_REF:0000024
RGD
UniProt
PMID:8901575 PMID:11434569 GO_REF:0000024 NCBI chr  X:71,390,328...71,395,023
Ensembl chr  X:67,350,373...67,355,162
JBrowse link
G Dct dopachrome tautomerase acts_upstream_of_or_within ISO MGI:1856379 (PMID:1537334) RGD PMID:1537334 NCBI chr15:95,062,006...95,100,863
Ensembl chr15:95,062,003...95,100,836
JBrowse link
G Dock7 dedicator of cytokinesis 7 acts_upstream_of_or_within ISO MGI:1856946 (PMID:2379821) RGD PMID:2379821 NCBI chr 5:113,599,371...113,782,871
Ensembl chr 5:113,600,198...113,782,813
JBrowse link
G Drd2 dopamine receptor D2 acts_upstream_of_or_within ISO MGI:3576789 (PMID:9140068) RGD PMID:9140068 NCBI chr 8:58,605,403...58,669,339
Ensembl chr 8:49,708,927...49,772,875
JBrowse link
G Eda ectodysplasin-A acts_upstream_of_or_within ISO MGI:1856197|MGI:1858152 (PMID:4561716) RGD PMID:4561716 MGI:65389 NCBI chr  X:69,118,577...69,520,274
Ensembl chr  X:65,078,673...65,480,172
JBrowse link
G Edar ectodysplasin-A receptor acts_upstream_of_or_within ISO MGI:1856017 (PMID:544312) RGD PMID:544312 NCBI chr20:27,130,934...27,209,672
Ensembl chr20:26,587,839...26,666,494
JBrowse link
G Ednrb endothelin receptor type B acts_upstream_of_or_within ISO
IMP
MGI:1856148 (PMID:2379821)
homozygous sl mutation results in white coat color, occasionally with pigmented spots on head or hip
RGD PMID:2379821 PMID:8570650 RGD:628515 NCBI chr15:87,055,490...87,086,765
Ensembl chr15:80,643,043...80,672,115
JBrowse link
G En1 engrailed homeobox 1 acts_upstream_of_or_within ISO MGI:1857163 (PMID:9362463) RGD PMID:9362463 NCBI chr13:34,303,684...34,309,269
Ensembl chr13:31,751,545...31,755,943
JBrowse link
G Fig4 FIG4 phosphoinositide 5-phosphatase acts_upstream_of_or_within ISO MGI:3716838 (PMID:17572665), (PMID:22028665) RGD PMID:17572665 PMID:22028665 NCBI chr20:46,183,225...46,306,686
Ensembl chr20:44,600,603...44,723,844
JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO MGI:1856712 (PMID:2379821), (PMID:7089489) RGD PMID:2379821 PMID:7089489 NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268
JBrowse link
G Hps3 HPS3, biogenesis of lysosomal organelles complex 2 subunit 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:1856707 (PMID:2379821)
GO_Central
RGD
PMID:2379821 GO_REF:0000033 NCBI chr 2:104,413,618...104,455,091
Ensembl chr 2:102,484,574...102,526,047
JBrowse link
G Hps5 HPS5, biogenesis of lysosomal organelles complex 2 subunit 2 acts_upstream_of_or_within ISO MGI:1856147 (PMID:2379821) RGD PMID:2379821 NCBI chr 1:106,417,902...106,457,220
Ensembl chr 1:97,247,598...97,321,019
JBrowse link
G Hps6 HPS6, biogenesis of lysosomal organelles complex 2 subunit 3 acts_upstream_of_or_within ISO MGI:1856147|MGI:1856544 (PMID:15265785), (PMID:17247639), (PMID:2379821) RGD PMID:2379821 PMID:15265785 PMID:17247639 NCBI chr 1:244,853,256...244,855,865
Ensembl chr 1:244,853,194...244,855,883
JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase acts_upstream_of_or_within
involved_in
ISO MGI:97306 (PMID:10620616)
(PMID:15067126)
RGD PMID:10620616 PMID:15067126 NCBI chr14:32,901,615...32,978,895
Ensembl chr14:32,548,877...32,624,652
JBrowse link
G Krt76 keratin 76 acts_upstream_of_or_within ISO MGI:4363117 (PMID:25340873) RGD PMID:25340873 NCBI chr 7:133,016,990...133,025,475
Ensembl chr 7:133,016,992...133,025,496
JBrowse link
G Lyst lysosomal trafficking regulator involved_in
acts_upstream_of_or_within
ISO
IMP
(PMID:10648412)
MGI:1855968|MGI:2660913 (PMID:13943454), (PMID:2513223), (PMID:4031470), (PMID:7089489)
RGD PMID:2513223 PMID:4031470 PMID:7089489 PMID:10648412 PMID:13943454 More... RGD:1302441 NCBI chr17:93,225,509...93,427,650
Ensembl chr17:86,241,384...86,443,480
JBrowse link
G Mc1r melanocortin 1 receptor acts_upstream_of_or_within ISO MGI:1856029 RGD MGI:87265 NCBI chr19:68,360,950...68,363,877
Ensembl chr19:51,453,239...51,454,192
JBrowse link
G Mfsd12 major facilitator superfamily domain containing 12 acts_upstream_of_or_within ISO MGI:1856888 RGD MGI:60250 NCBI chr 7:8,345,171...8,354,050
Ensembl chr 7:8,347,314...8,353,988
JBrowse link
G Mitf melanocyte inducing transcription factor acts_upstream_of_or_within ISO MGI:1856088|MGI:1856095|MGI:88138 (PMID:12086670), (PMID:2379821) RGD PMID:2379821 PMID:12086670 NCBI chr 4:131,965,676...132,177,790
Ensembl chr 4:130,409,217...130,621,145
JBrowse link
G Mlph melanophilin acts_upstream_of_or_within ISO MGI:1856674 (PMID:17247639), (PMID:2379821) RGD PMID:2379821 PMID:17247639 NCBI chr 9:91,507,410...91,542,984
Ensembl chr 9:91,507,591...91,542,983
JBrowse link
G Mreg melanoregulin acts_upstream_of_or_within ISO MGI:1856847 (PMID:2379821), (PMID:3141922), (PMID:7828830) RGD PMID:2379821 PMID:3141922 PMID:7828830 NCBI chr 9:73,786,727...73,842,081
Ensembl chr 9:73,787,267...73,842,087
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO MGI:2178233|MGI:2386570 (PMID:17523175) RGD PMID:17523175 NCBI chr 7:95,483,105...95,488,031
Ensembl chr 7:93,593,705...93,598,630
JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within IMP
ISO
PMID:10920234
MGI:1856004|MGI:1856005|MGI:1856008|MGI:1856407|MGI:1856847|MGI:1858058|MGI:1858059|MGI:1858060|MGI:1858061|MGI:1858062|MGI:1858063|MGI:1858064|MGI:1858065|MGI:1858066|MGI:1860204|MGI:1891626|MGI:1891639|MGI:2658702|MGI:3583341|MGI:5641704 (PMID:13880466), (PMID:17247639), (PMID:2379821), (PMID:24721909), (PMID:25340873), (PMID:3141922), (PMID:3422417), (PMID:6098826), (PMID:6305507), (PMID:7774591), (PMID:7828830), (PMID:9560408), (PMID:9560409)
RGD PMID:2379821 PMID:3141922 PMID:3422417 PMID:6098826 PMID:6305507 More... MGI:61192, RGD:61493 NCBI chr 8:84,692,524...84,860,564
Ensembl chr 8:75,812,412...75,975,918
JBrowse link
G Mysm1 myb-like, SWIRM and MPN domains 1 acts_upstream_of_or_within ISO MGI:4362924 (PMID:25340873) RGD PMID:25340873 NCBI chr 5:114,877,112...114,981,463
Ensembl chr 5:109,776,286...109,819,967
JBrowse link
G Nf1 neurofibromin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
ISS
GO_REF:0000107
MGI:1857444|MGI:96677 (PMID:10594763), (PMID:10620616), (PMID:10844550)
GO_REF:0000024
Ensembl
RGD
HGNC-UCL
PMID:10594763 PMID:10620616 PMID:10844550 GO_REF:0000024 GO_REF:0000107 NCBI chr10:64,803,986...65,037,086
Ensembl chr10:64,306,301...64,536,658
JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein acts_upstream_of_or_within ISO MGI:1856114 (PMID:13943454), (PMID:17247639), (PMID:2379821), (PMID:9548375) RGD PMID:2379821 PMID:9548375 PMID:13943454 PMID:17247639 NCBI chr 1:116,252,026...116,581,838
Ensembl chr 1:107,116,278...107,446,074
JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within ISO MGI:1856656 (PMID:2379821) RGD PMID:2379821 NCBI chr 8:82,663,373...82,717,267
Ensembl chr 8:73,782,694...73,847,829
JBrowse link
G Rack1 receptor for activated C kinase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:5660834 (PMID:23212600)
Ensembl
RGD
PMID:23212600 GO_REF:0000107 NCBI chr10:33,668,560...33,676,031
Ensembl chr10:33,169,169...33,174,975
JBrowse link
G Recql4 RecQ like helicase 4 acts_upstream_of_or_within ISO MGI:3045113 (PMID:15703196) RGD PMID:15703196 NCBI chr 7:110,304,092...110,311,426
Ensembl chr 7:108,423,455...108,430,619
JBrowse link
G Snai2 snail family transcriptional repressor 2 involved_in ISO (PMID:12444107) RGD PMID:12444107 NCBI chr11:99,686,934...99,690,349
Ensembl chr11:86,181,909...86,186,200
JBrowse link
G Sparc secreted protein acidic and cysteine rich acts_upstream_of_or_within ISO MGI:4432869 (PMID:25340873) RGD PMID:25340873 NCBI chr10:40,017,065...40,038,816
Ensembl chr10:39,516,406...39,538,396
JBrowse link
G Szt2 SZT2 subunit of KICSTOR complex acts_upstream_of_or_within ISO MGI:4353996 (PMID:19624305) RGD PMID:19624305 NCBI chr 5:137,182,648...137,229,349
Ensembl chr 5:131,897,275...131,943,904
JBrowse link
G Tyr tyrosinase acts_upstream_of_or_within
involved_in
IMP
ISO
IBA
MGI:1855976|MGI:1855978 (PMID:13880466), (PMID:17247639), (PMID:9548375)
GO_REF:0000033
RGD
GO_Central
PMID:9548375 PMID:13880466 PMID:17247639 PMID:15760344 GO_REF:0000033, RGD:1599687 NCBI chr 1:150,527,687...150,622,857
Ensembl chr 1:141,115,036...141,210,207
JBrowse link
G Tyrp1 tyrosinase-related protein 1 acts_upstream_of_or_within ISO MGI:1855960|MGI:1855962 (PMID:13880466), (PMID:17247639), (PMID:2379821) RGD PMID:2379821 PMID:13880466 PMID:17247639 NCBI chr 5:95,280,982...95,299,516
Ensembl chr 5:95,280,982...95,299,516
JBrowse link
G Vangl1 VANGL planar cell polarity protein 1 acts_upstream_of_or_within ISO MGI:4365105 (PMID:25340873) RGD PMID:25340873 NCBI chr 2:192,277,762...192,326,151
Ensembl chr 2:189,589,229...189,637,619
JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes acts_upstream_of_or_within ISO MGI:1856687 (PMID:4777306) RGD PMID:4777306 NCBI chr12:33,024,596...33,051,399
Ensembl chr12:33,024,650...33,051,393
JBrowse link
background adaptation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO MGI:2152779 (PMID:24373883) RGD PMID:24373883 NCBI chr 8:117,229,575...117,234,311
Ensembl chr 8:108,350,935...108,355,671
JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO MGI:3588845 (PMID:24373883) RGD PMID:24373883 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866
JBrowse link
cellular pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pomc proopiomelanocortin involved_in IEA
ISO
GO_REF:0000107
(PMID:9620771)
Ensembl
RGD
PMID:9620771 GO_REF:0000107 NCBI chr 6:32,659,137...32,665,175
Ensembl chr 6:26,939,837...26,945,664
JBrowse link
developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:1197519|MGI:2156165 (PMID:11709185), (PMID:8170972) RGD PMID:8170972 PMID:11709185 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743
JBrowse link
G Bcl2l11 Bcl2-like 11 acts_upstream_of_or_within ISO MGI:88138 (PMID:11709185) RGD PMID:11709185 NCBI chr 3:135,820,042...135,857,330
Ensembl chr 3:115,366,646...115,404,068
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 acts_upstream_of_or_within ISO MGI:1857021 (PMID:15102850), (PMID:7203014) RGD PMID:7203014 PMID:15102850 NCBI chr 1:79,155,873...79,158,247
Ensembl chr 1:79,155,693...79,158,505
JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 acts_upstream_of_or_within ISO MGI:1856106 (PMID:11912185) RGD PMID:11912185 NCBI chr17:26,377,549...26,402,869
Ensembl chr17:26,172,018...26,197,251
JBrowse link
G Dct dopachrome tautomerase involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:1856379 (PMID:15060160)
GO_Central
RGD
PMID:15060160 GO_REF:0000033 NCBI chr15:95,062,006...95,100,863
Ensembl chr15:95,062,003...95,100,836
JBrowse link
G Ednra endothelin receptor type A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:47,137,360...47,207,961
Ensembl chr19:30,233,571...30,297,049
JBrowse link
G Ednrb endothelin receptor type B involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:1856149 (PMID:15322542)
GO_Central
RGD
PMID:15322542 GO_REF:0000033 NCBI chr15:87,055,490...87,086,765
Ensembl chr15:80,643,043...80,672,115
JBrowse link
G Gna11 G protein subunit alpha 11 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2151589 (PMID:15322542)
Ensembl
RGD
PMID:15322542 GO_REF:0000107 NCBI chr 7:8,814,285...8,828,628
Ensembl chr 7:8,162,750...8,179,812
JBrowse link
G Gnaq G protein subunit alpha q involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2151661 (PMID:15322542)
Ensembl
RGD
PMID:15322542 GO_REF:0000107 NCBI chr 1:222,852,453...223,098,754
Ensembl chr 1:213,424,465...213,667,672
JBrowse link
G Hps5 HPS5, biogenesis of lysosomal organelles complex 2 subunit 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:106,417,902...106,457,220
Ensembl chr 1:97,247,598...97,321,019
JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:1856161|MGI:1856164|MGI:1856266|MGI:2449782|MGI:2660628 (PMID:15322542), (PMID:18454205) RGD PMID:15322542 PMID:18454205 NCBI chr14:32,901,615...32,978,895
Ensembl chr14:32,548,877...32,624,652
JBrowse link
G Mreg melanoregulin acts_upstream_of_or_within ISO MGI:1856847 (PMID:15550542) RGD PMID:15550542 NCBI chr 9:73,786,727...73,842,081
Ensembl chr 9:73,787,267...73,842,087
JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO MGI:1856004 (PMID:15550542) RGD PMID:15550542 NCBI chr 8:84,692,524...84,860,564
Ensembl chr 8:75,812,412...75,975,918
JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein acts_upstream_of_or_within ISO MGI:1856123 (PMID:11756244) RGD PMID:11756244 NCBI chr 1:116,252,026...116,581,838
Ensembl chr 1:107,116,278...107,446,074
JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO MGI:1856173 (PMID:15322542) RGD PMID:15322542 NCBI chr 9:87,015,960...87,112,531
Ensembl chr 9:79,568,634...79,664,042
JBrowse link
G Saa4 serum amyloid A4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:97,247,580...97,251,882 JBrowse link
G Slc45a2 solute carrier family 45, member 2 involved_in
acts_upstream_of_or_within
ISO (PMID:35469906)
MGI:1856227|MGI:1856581|MGI:1857540 (PMID:11700328)
RGD PMID:11700328 PMID:35469906 NCBI chr 2:61,690,828...61,723,437
Ensembl chr 2:59,963,706...59,996,317
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in ISO (PMID:24769727) RGD PMID:24769727 NCBI chr 3:49,624,028...49,754,323
Ensembl chr 3:29,218,301...29,345,157
JBrowse link
G Zic2 Zic family member 2 acts_upstream_of_or_within ISO MGI:1861983 (PMID:10932191) RGD PMID:10932191 NCBI chr15:105,982,711...105,988,167
Ensembl chr15:99,576,697...99,581,522
JBrowse link
endosome to melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd27 ankyrin repeat domain 27 involved_in ISO (PMID:21187829) RGD PMID:21187829 NCBI chr 1:88,251,216...88,303,615
Ensembl chr 1:88,251,226...88,303,615
JBrowse link
G Ap1g1 adaptor related protein complex 1 subunit gamma 1 involved_in ISO (PMID:22511774) RGD PMID:22511774 NCBI chr19:54,654,101...54,740,586
Ensembl chr19:37,744,633...37,829,167
JBrowse link
G Ap1m1 adaptor related protein complex 1 subunit mu 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:19841138)
Ensembl
RGD
PMID:19841138 GO_REF:0000107 NCBI chr16:17,620,910...17,636,431
Ensembl chr16:17,584,730...17,602,403
JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 involved_in ISO (PMID:22511774) RGD PMID:22511774 NCBI chr 7:9,620,909...9,656,350
Ensembl chr 7:8,970,291...9,005,643
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr 1:79,155,873...79,158,247
Ensembl chr 1:79,155,693...79,158,505
JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr17:26,377,549...26,402,869
Ensembl chr17:26,172,018...26,197,251
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISO
ISS
(PMID:17182842)
GO_REF:0000024
RGD
UniProt
PMID:17182842 GO_REF:0000024 NCBI chr 3:130,269,979...130,280,109
Ensembl chr 3:109,816,366...109,828,308
JBrowse link
G Cd63 Cd63 molecule involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:21962903)
UniProt
Ensembl
RGD
PMID:21962903 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:1,325,108...1,340,447
Ensembl chr 7:1,325,103...1,399,178
JBrowse link
G Rab32 RAB32, member RAS oncogene family involved_in ISO (PMID:22511774) RGD PMID:22511774 NCBI chr 1:4,946,193...4,961,003
Ensembl chr 1:4,945,036...4,960,934
JBrowse link
G Rab38 RAB38, member RAS oncogene family involved_in ISO (PMID:22511774) RGD PMID:22511774 NCBI chr 1:151,595,153...151,675,492
Ensembl chr 1:142,182,556...142,262,924
JBrowse link
erythrophore differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sod2 superoxide dismutase 2 acts_upstream_of_or_within ISO MGI:1857344 (PMID:15205258) RGD PMID:15205258 NCBI chr 1:50,043,323...50,050,168
Ensembl chr 1:47,636,528...47,645,189
JBrowse link
establishment of melanosome localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab17 RAB17, member RAS oncogene family involved_in ISO (PMID:21291502) RGD PMID:21291502 NCBI chr 9:91,552,924...91,566,759
Ensembl chr 9:91,553,464...91,566,451
JBrowse link
eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6ap2 ATPase H+ transporting accessory protein 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:20093472)
Ensembl
RGD
PMID:20093472 GO_REF:0000107 NCBI chr  X:12,856,708...12,883,670
Ensembl chr  X:10,183,068...10,210,918
JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO MGI:2136645 (PMID:22627278) RGD PMID:22627278 NCBI chr 4:148,328,099...148,334,992
Ensembl chr 4:146,772,468...146,779,377
JBrowse link
melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif, 20 acts_upstream_of ISO MGI:1916320|MGI:3766915 (PMID:18454205) RGD PMID:18454205 NCBI chr 7:125,396,227...125,528,020
Ensembl chr 7:125,397,734...125,527,777
JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of ISO MGI:2660628 (PMID:18454205) RGD PMID:18454205 NCBI chr 4:126,847,726...127,019,924
Ensembl chr 4:125,291,490...125,462,929
JBrowse link
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2158305 (PMID:16427619)
MGI:104554|MGI:2156165|MGI:2158305 (PMID:11709185), (PMID:12086670), (PMID:8758925)
Ensembl
RGD
PMID:8758925 PMID:11709185 PMID:12086670 PMID:16427619 GO_REF:0000107 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within ISO MGI:1856982 (PMID:2379821) RGD PMID:2379821 NCBI chr 3:130,269,979...130,280,109
Ensembl chr 3:109,816,366...109,828,308
JBrowse link
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:8901575)
UniProt
GO_Central
RGD
PMID:8901575 GO_REF:0000024 GO_REF:0000033 NCBI chr  X:71,390,328...71,395,023
Ensembl chr  X:67,350,373...67,355,162
JBrowse link
G Cited1l1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:204,760,742...204,761,351
Ensembl chr 1:204,760,188...204,761,398
JBrowse link
G Edn3 endothelin 3 acts_upstream_of_or_within ISO (PMID:9012511) RGD PMID:9012511 NCBI chr 3:183,980,458...184,004,958
Ensembl chr 3:163,562,520...163,585,093
JBrowse link
G Ednrb endothelin receptor type B acts_upstream_of_or_within IDA
ISO
MGI:1856148 (PMID:2379821), (PMID:9012511) RGD PMID:2379821 PMID:9012511 PMID:11709437 RGD:628459 NCBI chr15:87,055,490...87,086,765
Ensembl chr15:80,643,043...80,672,115
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO
ISS
(PMID:28964717)
GO_REF:0000024
RGD
UniProt
PMID:28964717 GO_REF:0000024 NCBI chr 1:22,518,051...22,583,044
Ensembl chr 1:20,698,764...20,763,715
JBrowse link
G ENSRNOG00000066743 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 1:204,760,188...204,761,398 JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:3720956 (PMID:18397875) RGD PMID:18397875 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712
JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO MGI:1856712 (PMID:11836498) RGD PMID:11836498 NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268
JBrowse link
G Hps4 HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 acts_upstream_of_or_within ISO MGI:1856931 (PMID:11836498) RGD PMID:11836498 NCBI chr12:44,264,037...44,294,791
Ensembl chr12:44,264,037...44,294,632
JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase involved_in ISO (PMID:15768389) RGD PMID:15768389 NCBI chr14:32,901,615...32,978,895
Ensembl chr14:32,548,877...32,624,652
JBrowse link
G Lrmda leucine rich melanocyte differentiation associated involved_in ISO
IBA
(PMID:23395477)
GO_REF:0000033
RGD
GO_Central
PMID:23395477 GO_REF:0000033 NCBI chr15:1,223,098...2,284,764
Ensembl chr15:1,225,710...2,284,749
JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISS
ISO
GO_REF:0000024
(PMID:21610032)
UniProt
RGD
PMID:21610032 GO_REF:0000024 NCBI chr 2:15,708,732...15,871,639
Ensembl chr 2:13,993,438...14,132,880
JBrowse link
G Mitf melanocyte inducing transcription factor involved_in
acts_upstream_of_or_within
IEA
IBA
ISO
GO_REF:0000107
GO_REF:0000033
MGI:1856088|MGI:1856095|MGI:88138 (PMID:12086670), (PMID:2379821)
Ensembl
GO_Central
RGD
PMID:2379821 PMID:12086670 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:131,965,676...132,177,790
Ensembl chr 4:130,409,217...130,621,145
JBrowse link
G Mlph melanophilin acts_upstream_of_or_within ISO MGI:1856674 (PMID:11504925), (PMID:2379821) RGD PMID:2379821 PMID:11504925 NCBI chr 9:91,507,410...91,542,984
Ensembl chr 9:91,507,591...91,542,983
JBrowse link
G Mreg melanoregulin involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:1856847 (PMID:2379821), (PMID:7828830)
GO_Central
RGD
PMID:2379821 PMID:7828830 GO_REF:0000033 NCBI chr 9:73,786,727...73,842,081
Ensembl chr 9:73,787,267...73,842,087
JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO MGI:1856004 (PMID:1996138), (PMID:2379821), (PMID:7828830) RGD PMID:1996138 PMID:2379821 PMID:7828830 NCBI chr 8:84,692,524...84,860,564
Ensembl chr 8:75,812,412...75,975,918
JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:1856114 (PMID:2379821)
GO_Central
RGD
PMID:2379821 GO_REF:0000033 NCBI chr 1:116,252,026...116,581,838
Ensembl chr 1:107,116,278...107,446,074
JBrowse link
G Olr59 olfactory receptor 59 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:27226631)
Ensembl
UniProt
RGD
PMID:27226631 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:157,193,051...157,227,707
Ensembl chr 1:157,193,080...157,211,179
JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within ISO MGI:1856656 (PMID:2379821) RGD PMID:2379821 MGI:52947 NCBI chr 8:82,663,373...82,717,267
Ensembl chr 8:73,782,694...73,847,829
JBrowse link
G Sox10 SRY-box transcription factor 10 acts_upstream_of_or_within ISO MGI:3701358 (PMID:16790476) RGD PMID:16790476 NCBI chr 7:112,605,721...112,615,097
Ensembl chr 7:110,725,274...110,735,544
JBrowse link
G Tyrp1 tyrosinase-related protein 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:1855962 (PMID:2379821)
GO_Central
RGD
PMID:2379821 GO_REF:0000033 NCBI chr 5:95,280,982...95,299,516
Ensembl chr 5:95,280,982...95,299,516
JBrowse link
melanosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb6 ATP binding cassette subfamily B member 6 involved_in ISS
ISO
GO_REF:0000024
(PMID:29940187)
UniProt
RGD
PMID:29940187 GO_REF:0000024 NCBI chr 9:84,117,222...84,125,939
Ensembl chr 9:76,668,554...76,676,924
JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 involved_in ISO
IBA
(PMID:23084991)
GO_REF:0000033
RGD
GO_Central
PMID:23084991 GO_REF:0000033 NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268
JBrowse link
G Hps4 HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 involved_in ISO
IBA
(PMID:23084991)
GO_REF:0000033
RGD
GO_Central
PMID:23084991 GO_REF:0000033 NCBI chr12:44,264,037...44,294,791
Ensembl chr12:44,264,037...44,294,632
JBrowse link
G Rab32 RAB32, member RAS oncogene family involved_in ISO (PMID:22511774), (PMID:23084991) RGD PMID:22511774 PMID:23084991 NCBI chr 1:4,946,193...4,961,003
Ensembl chr 1:4,945,036...4,960,934
JBrowse link
G Rab38 RAB38, member RAS oncogene family involved_in ISO (PMID:22511774), (PMID:23084991) RGD PMID:22511774 PMID:23084991 NCBI chr 1:151,595,153...151,675,492
Ensembl chr 1:142,182,556...142,262,924
JBrowse link
melanosome localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr143 G protein-coupled receptor 143 involved_in ISO (PMID:19717472) RGD PMID:19717472 NCBI chr  X:22,002,914...22,027,720
Ensembl chr  X:22,002,914...22,027,715
JBrowse link
G Mlph melanophilin acts_upstream_of_or_within ISO MGI:1856674 (PMID:11886590), (PMID:11887186), (PMID:14730011) RGD PMID:11886590 PMID:11887186 PMID:14730011 NCBI chr 9:91,507,410...91,542,984
Ensembl chr 9:91,507,591...91,542,983
JBrowse link
G Mreg melanoregulin involved_in ISO (PMID:22940130) RGD PMID:22940130 NCBI chr 9:73,786,727...73,842,081
Ensembl chr 9:73,787,267...73,842,087
JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO MGI:1856004 (PMID:11266470), (PMID:14730011), (PMID:8962090) RGD PMID:8962090 PMID:11266470 PMID:14730011 NCBI chr 8:84,692,524...84,860,564
Ensembl chr 8:75,812,412...75,975,918
JBrowse link
G Rab27a RAB27A, member RAS oncogene family involved_in ISO (PMID:15357836) RGD PMID:15357836 NCBI chr 8:82,663,373...82,717,267
Ensembl chr 8:73,782,694...73,847,829
JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes involved_in ISO
IEA
(PMID:15790593)
GO_REF:0000107
RGD
Ensembl
PMID:15790593 GO_REF:0000107 NCBI chr12:33,024,596...33,051,399
Ensembl chr12:33,024,650...33,051,393
JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated involved_in ISO (PMID:15790593) RGD PMID:15790593 NCBI chr 1:143,633,167...143,656,228
Ensembl chr 1:134,223,949...134,246,970
JBrowse link
melanosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1m1 adaptor related protein complex 1 subunit mu 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:19841138)
Ensembl
RGD
PMID:19841138 GO_REF:0000107 NCBI chr16:17,620,910...17,636,431
Ensembl chr16:17,584,730...17,602,403
JBrowse link
G Ap3b1 adaptor related protein complex 3 subunit beta 1 involved_in
acts_upstream_of_or_within
ISO (PMID:11452004), (PMID:19841138)
(PMID:9931340)
RGD PMID:9931340 PMID:11452004 PMID:19841138 NCBI chr 2:27,331,241...27,535,683
Ensembl chr 2:25,600,040...25,800,935
JBrowse link
G Apoe apolipoprotein E involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:26387950)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:26387950 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:88,481,889...88,485,816
Ensembl chr 1:79,353,916...79,357,932
JBrowse link
G Asip agouti signaling protein involved_in
acts_upstream_of_or_within
IEA
IBA
ISO
GO_REF:0000107
GO_REF:0000033
MGI:1855937 (PMID:9548375)
Ensembl
GO_Central
RGD
PMID:9548375 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:143,473,584...143,561,170
Ensembl chr 3:143,555,696...143,561,171
JBrowse link
G Bace2 beta-secretase 2 involved_in ISO (PMID:23754390) RGD PMID:23754390 NCBI chr11:50,176,852...50,258,948
Ensembl chr11:36,707,458...36,789,546
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 acts_upstream_of_or_within ISO MGI:1857021 (PMID:15265785) RGD PMID:15265785 NCBI chr 1:79,155,873...79,158,247
Ensembl chr 1:79,155,693...79,158,505
JBrowse link
G Bloc1s4 biogenesis of lysosomal organelles complex 1 subunit 4 acts_upstream_of_or_within ISO MGI:2449643 (PMID:11110696) RGD PMID:11110696 NCBI chr14:74,043,025...74,044,325
Ensembl chr14:74,043,015...74,044,531
JBrowse link
G Gpr143 G protein-coupled receptor 143 involved_in ISO
IBA
(PMID:19717472)
GO_REF:0000033
RGD
GO_Central
PMID:19717472 GO_REF:0000033 NCBI chr  X:22,002,914...22,027,720
Ensembl chr  X:22,002,914...22,027,715
JBrowse link
G Kif13a kinesin family member 13A involved_in ISO (PMID:19841138) RGD PMID:19841138 NCBI chr17:17,766,597...17,948,517
Ensembl chr17:17,766,597...17,943,615
JBrowse link
G Lyst lysosomal trafficking regulator acts_upstream_of_or_within ISO MGI:1855968|MGI:3620573 (PMID:16518687), (PMID:4634048) RGD PMID:4634048 PMID:16518687 NCBI chr17:93,225,509...93,427,650
Ensembl chr17:86,241,384...86,443,480
JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO
IBA
(PMID:29584722)
GO_REF:0000033
RGD
GO_Central
PMID:29584722 GO_REF:0000033 NCBI chr 9:66,563,747...66,657,873
Ensembl chr 9:66,563,727...66,657,868
JBrowse link
G Pmel premelanosome protein involved_in ISO
IBA
(PMID:11694580)
GO_REF:0000033
RGD
GO_Central
PMID:11694580 GO_REF:0000033 NCBI chr 7:1,138,202...1,148,735
Ensembl chr 7:1,138,586...1,148,746
JBrowse link
G Rab29 RAB29, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:45,859,930...45,865,468
Ensembl chr13:43,307,775...43,313,417
JBrowse link
G Rab38 RAB38, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:151,595,153...151,675,492
Ensembl chr 1:142,182,556...142,262,924
JBrowse link
G Shroom2 shroom family member 2 involved_in ISO
ISS
(PMID:16987870)
GO_REF:0000024
RGD
UniProt
PMID:16987870 GO_REF:0000024 NCBI chr  X:21,812,469...21,983,724
Ensembl chr  X:21,812,469...21,984,153
JBrowse link
G Tyrp1 tyrosinase-related protein 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:1855960 (PMID:9548375)
GO_Central
RGD
PMID:9548375 GO_REF:0000033 NCBI chr 5:95,280,982...95,299,516
Ensembl chr 5:95,280,982...95,299,516
JBrowse link
melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asip agouti signaling protein involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1855937 (PMID:9548375)
Ensembl
RGD
PMID:9548375 GO_REF:0000107 NCBI chr 3:143,473,584...143,561,170
Ensembl chr 3:143,555,696...143,561,171
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr 1:79,155,873...79,158,247
Ensembl chr 1:79,155,693...79,158,505
JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr17:26,377,549...26,402,869
Ensembl chr17:26,172,018...26,197,251
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISS
ISO
GO_REF:0000024
(PMID:17182842)
UniProt
RGD
PMID:17182842 GO_REF:0000024 NCBI chr 3:130,269,979...130,280,109
Ensembl chr 3:109,816,366...109,828,308
JBrowse link
G Dctn1 dynactin subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:22275436)
Ensembl
RGD
PMID:22275436 GO_REF:0000107 NCBI chr 4:115,671,024...115,703,824
Ensembl chr 4:115,661,638...115,703,815
JBrowse link
G Dctn2 dynactin subunit 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:22275436)
Ensembl
RGD
PMID:22275436 GO_REF:0000107 NCBI chr 7:63,092,061...63,107,560
Ensembl chr 7:63,092,057...63,108,543
JBrowse link
G Gpr143 G protein-coupled receptor 143 involved_in ISO (PMID:19717472) RGD PMID:19717472 NCBI chr  X:22,002,914...22,027,720
Ensembl chr  X:22,002,914...22,027,715
JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 IDA positive regulation of bidirectional melanosome transport along microtubules RGD PMID:15753041 RGD:2293208 NCBI chr 8:73,578,747...73,650,184
Ensembl chr 8:64,683,449...64,755,147
JBrowse link
G Mreg melanoregulin acts_upstream_of_or_within
involved_in
ISO
IBA
(PMID:22275436)
GO_REF:0000033
RGD
GO_Central
PMID:22275436 GO_REF:0000033 NCBI chr 9:73,786,727...73,842,081
Ensembl chr 9:73,787,267...73,842,087
JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO MGI:1856004|MGI:1858077 (PMID:11266473), (PMID:24721909), (PMID:9133672), (PMID:9548375) RGD PMID:9133672 PMID:9548375 PMID:11266473 PMID:24721909 NCBI chr 8:84,692,524...84,860,564
Ensembl chr 8:75,812,412...75,975,918
JBrowse link
G Rab11a RAB11a, member RAS oncogene family involved_in ISO
IBA
ISS
(PMID:21291502)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:21291502 GO_REF:0000024 GO_REF:0000033 NCBI chr 8:65,223,698...65,246,461
Ensembl chr 8:65,222,949...65,246,525
JBrowse link
G Rab11b RAB11B, member RAS oncogene family involved_in ISS
ISO
GO_REF:0000024
(PMID:21291502)
UniProt
RGD
PMID:21291502 GO_REF:0000024 NCBI chr 7:15,223,613...15,236,754
Ensembl chr 7:14,521,368...14,534,593
JBrowse link
G Rab17 RAB17, member RAS oncogene family involved_in ISO (PMID:21291502) RGD PMID:21291502 NCBI chr 9:91,552,924...91,566,759
Ensembl chr 9:91,553,464...91,566,451
JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO (PMID:22854043) RGD PMID:22854043 NCBI chr14:98,623,582...98,648,766
Ensembl chr14:94,415,275...94,448,248
JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within ISO MGI:1856656 (PMID:11266473) RGD PMID:11266473 NCBI chr 8:82,663,373...82,717,267
Ensembl chr 8:73,782,694...73,847,829
JBrowse link
negative regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tpcn2 two pore segment channel 2 involved_in ISO (PMID:27140606)
(PMID:27231233)
RGD PMID:27140606 PMID:27231233 NCBI chr 1:209,845,827...209,875,561
Ensembl chr 1:200,416,540...200,446,236
JBrowse link
negative regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO MGI:1934258 (PMID:17464332) RGD PMID:17464332 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532
JBrowse link
pigment cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamtsl4 ADAMTS-like 4 acts_upstream_of_or_within ISO (PMID:26405179) RGD PMID:26405179 NCBI chr 2:183,235,634...183,247,091
Ensembl chr 2:183,235,646...183,246,848
JBrowse link
pigment cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd63 Cd63 molecule involved_in ISO (PMID:21962903) RGD PMID:21962903 NCBI chr 7:1,325,108...1,340,447
Ensembl chr 7:1,325,103...1,399,178
JBrowse link
pigment granule localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myo7a myosin VIIA acts_upstream_of_or_within ISO MGI:1856716|MGI:2155422 (PMID:14609561), (PMID:14978221), (PMID:15572405) RGD PMID:14609561 PMID:14978221 PMID:15572405 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within ISO MGI:1856656 (PMID:14978221), (PMID:15572405) RGD PMID:14978221 PMID:15572405 NCBI chr 8:82,663,373...82,717,267
Ensembl chr 8:73,782,694...73,847,829
JBrowse link
pigment granule maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd63 Cd63 molecule involved_in ISS
ISO
GO_REF:0000024
(PMID:21962903)
UniProt
RGD
PMID:21962903 GO_REF:0000024 NCBI chr 7:1,325,108...1,340,447
Ensembl chr 7:1,325,103...1,399,178
JBrowse link
pigment granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2158305 (PMID:8758925)
Ensembl
RGD
PMID:8758925 GO_REF:0000107 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743
JBrowse link
G Lyst lysosomal trafficking regulator acts_upstream_of_or_within ISO MGI:1855968 (PMID:1278263) RGD PMID:1278263 NCBI chr17:93,225,509...93,427,650
Ensembl chr17:86,241,384...86,443,480
JBrowse link
pigment granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myo7a myosin VIIA acts_upstream_of_or_within ISO MGI:1856716|MGI:2155422 (PMID:15572405), (PMID:9620764) RGD PMID:9620764 PMID:15572405 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within ISO MGI:1856656 (PMID:15572405) RGD PMID:15572405 NCBI chr 8:82,663,373...82,717,267
Ensembl chr 8:73,782,694...73,847,829
JBrowse link
pigment metabolic process involved in pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mfsd12 major facilitator superfamily domain containing 12 involved_in ISO
IBA
(PMID:33208952)
GO_REF:0000033
(PMID:31117290)
RGD
GO_Central
PMID:31117290 PMID:33208952 GO_REF:0000033 NCBI chr 7:8,345,171...8,354,050
Ensembl chr 7:8,347,314...8,353,988
JBrowse link
G Tbx2 T-box transcription factor 2 acts_upstream_of_negative_effect ISO (PMID:26971330) RGD PMID:26971330 NCBI chr10:71,177,082...71,186,275
Ensembl chr10:70,679,518...70,688,529
JBrowse link
positive regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO MGI:99702 (PMID:9241272) RGD PMID:9241272 NCBI chr 1:105,076,472...105,081,906
Ensembl chr 1:95,938,808...95,945,368
JBrowse link
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:88138 (PMID:9241272) RGD PMID:9241272 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743
JBrowse link
positive regulation of melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif, 20 acts_upstream_of_or_within ISO MGI:1916320|MGI:3766915 (PMID:18454205) RGD PMID:18454205 NCBI chr 7:125,396,227...125,528,020
Ensembl chr 7:125,397,734...125,527,777
JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of_or_within ISO MGI:2660628 (PMID:18454205) RGD PMID:18454205 NCBI chr 4:126,847,726...127,019,924
Ensembl chr 4:125,291,490...125,462,929
JBrowse link
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2158305 (PMID:16427619)
Ensembl
RGD
PMID:16427619 GO_REF:0000107 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743
JBrowse link
G Kitlg KIT ligand acts_upstream_of_or_within ISO (PMID:16427619) RGD PMID:16427619 NCBI chr 7:36,782,621...36,863,796
Ensembl chr 7:34,896,053...34,977,214
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in ISO (PMID:24769727) RGD PMID:24769727 NCBI chr 3:49,624,028...49,754,323
Ensembl chr 3:29,218,301...29,345,157
JBrowse link
positive regulation of melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdh3 cadherin 3 involved_in ISO (PMID:23334344) RGD PMID:23334344 NCBI chr19:51,303,414...51,353,900
Ensembl chr19:34,393,727...34,444,084
JBrowse link
positive regulation of pigment cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr17:26,377,549...26,402,869
Ensembl chr17:26,172,018...26,197,251
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISS
ISO
GO_REF:0000024
(PMID:17182842)
UniProt
RGD
PMID:17182842 GO_REF:0000024 NCBI chr 3:130,269,979...130,280,109
Ensembl chr 3:109,816,366...109,828,308
JBrowse link
regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif, 20 acts_upstream_of_or_within ISO MGI:1916320|MGI:2675831|MGI:3766915|MGI:96677 (PMID:14138974), (PMID:18454205) RGD PMID:14138974 PMID:18454205 NCBI chr 7:125,396,227...125,528,020
Ensembl chr 7:125,397,734...125,527,777
JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of_or_within ISO MGI:2660628 (PMID:18454205) RGD PMID:18454205 NCBI chr 4:126,847,726...127,019,924
Ensembl chr 4:125,291,490...125,462,929
JBrowse link
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:1197519 (PMID:15818405) RGD PMID:15818405 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743
JBrowse link
G Bcl2l11 Bcl2-like 11 acts_upstream_of_or_within ISO MGI:88138 (PMID:15818405) RGD PMID:15818405 NCBI chr 3:135,820,042...135,857,330
Ensembl chr 3:115,366,646...115,404,068
JBrowse link
G Edn3 endothelin 3 acts_upstream_of_or_within ISO MGI:1856392 (PMID:14138974) RGD PMID:14138974 NCBI chr 3:183,980,458...184,004,958
Ensembl chr 3:163,562,520...163,585,093
JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856687 (PMID:12538872)
Ensembl
RGD
PMID:12538872 GO_REF:0000107 NCBI chr12:33,024,596...33,051,399
Ensembl chr12:33,024,650...33,051,393
JBrowse link
regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spns2 SPNS lysolipid transporter 2, sphingosine-1-phosphate acts_upstream_of_or_within ISO MGI:4460276 (PMID:22664872) RGD PMID:22664872 NCBI chr10:57,067,348...57,105,969
Ensembl chr10:57,066,897...57,105,957
JBrowse link
regulation of melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gna11 G protein subunit alpha 11 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2682213 (PMID:15322542)
Ensembl
RGD
PMID:15322542 GO_REF:0000107 NCBI chr 7:8,814,285...8,828,628
Ensembl chr 7:8,162,750...8,179,812
JBrowse link
G Gnaq G protein subunit alpha q involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2681766 (PMID:15322542)
Ensembl
RGD
PMID:15322542 GO_REF:0000107 NCBI chr 1:222,852,453...223,098,754
Ensembl chr 1:213,424,465...213,667,672
JBrowse link
regulation of melanosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr143 G protein-coupled receptor 143 involved_in ISO (PMID:18697795) RGD PMID:18697795 NCBI chr  X:22,002,914...22,027,720
Ensembl chr  X:22,002,914...22,027,715
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in ISO (PMID:24769727) RGD PMID:24769727 NCBI chr 3:49,624,028...49,754,323
Ensembl chr 3:29,218,301...29,345,157
JBrowse link
regulation of melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr143 G protein-coupled receptor 143 involved_in ISO (PMID:18697795) RGD PMID:18697795 NCBI chr  X:22,002,914...22,027,720
Ensembl chr  X:22,002,914...22,027,715
JBrowse link
rhodopsin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grk3 G protein-coupled receptor kinase 3 IMP RGD PMID:17573483 RGD:5685371 NCBI chr12:49,285,228...49,395,803
Ensembl chr12:43,624,897...43,731,262
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    pigmentation 107
      cellular pigmentation + 44
      developmental pigmentation + 56
      ocellus pigmentation + 0
      pigment accumulation + 10
      pigment metabolic process involved in pigmentation + 3
      regulation of pigmentation + 16
paths to the root