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ONTOLOGY REPORT - ANNOTATIONS

Term:proteoglycan binding
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Accession:GO:0043394 term browser browse the term
Definition:Binding to a proteoglycan, any glycoprotein in which the carbohydrate units are glycosaminoglycans.


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proteoglycan binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col2a1 collagen type II alpha 1 chain enables ISO
IEA 		(PMID:29030641)
GO_REF:0000107 		RGD
Ensembl		 PMID:29030641 GO_REF:0000107 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Col5a1 collagen type V alpha 1 chain enables ISO UniProtKB:Q00657 (PMID:9099729) RGD PMID:9099729 NCBI chr 3:11,208,429...11,356,715
Ensembl chr 3:11,208,512...11,354,588 		JBrowse link
G Col5a3 collagen type V alpha 3 chain IPI RGD PMID:15383532 PMID:15383532 RGD:5683638, RGD:5683638 NCBI chr 8:19,304,564...19,349,809
Ensembl chr 8:19,304,571...19,349,853 		JBrowse link
G Comp cartilage oligomeric matrix protein enables ISO
IEA 		(PMID:29030641)
GO_REF:0000107 		RGD
Ensembl		 PMID:29030641 GO_REF:0000107 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,047,207...19,055,845 		JBrowse link
G Ctsb cathepsin B enables ISO
IEA 		UniProtKB:Q05793 (PMID:22952693)
GO_REF:0000107 		RGD
Ensembl		 PMID:22952693 GO_REF:0000107 NCBI chr15:37,389,636...37,410,508
Ensembl chr15:37,389,629...37,410,500 		JBrowse link
G Ctsk cathepsin K enables ISO UniProtKB:Q05793 (PMID:22952693) RGD PMID:22952693 NCBI chr 2:185,747,548...185,758,512
Ensembl chr 2:183,058,569...183,069,550 		JBrowse link
G Ctsl cathepsin L enables ISO UniProtKB:Q05793 (PMID:22952693) RGD PMID:22952693 NCBI chr17:764,370...770,533
Ensembl chr17:764,309...770,548 		JBrowse link
G Ctss cathepsin S enables ISO UniProtKB:Q05793 (PMID:22952693) RGD PMID:22952693 NCBI chr 2:183,086,437...183,114,483
Ensembl chr 2:183,086,437...183,114,483 		JBrowse link
G Fn1 fibronectin 1 enables ISO
IBA
IEA 		(PMID:29030641)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:29030641 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:80,645,507...80,714,200
Ensembl chr 9:73,196,044...73,264,678 		JBrowse link
G Mfn2 mitofusin 2 IPI RGD PMID:25151458 RGD:13204806 NCBI chr 5:158,304,285...158,335,502
Ensembl chr 5:158,304,287...158,335,342 		JBrowse link
G Nid1 nidogen 1 enables ISO
IEA 		UniProtKB:Q05793 (PMID:22952693)
GO_REF:0000107 		RGD
Ensembl		 PMID:22952693 GO_REF:0000107 NCBI chr17:86,085,133...86,158,272
Ensembl chr17:86,085,077...86,158,267 		JBrowse link
G Ptn pleiotrophin enables IPI PMID:27671118 RGD
UniProt		 PMID:8702927 PMID:27671118 RGD:9589111, RGD:14397577 NCBI chr 4:65,293,731...65,375,572
Ensembl chr 4:65,293,734...65,375,456 		JBrowse link
G Slit2 slit guidance ligand 2 enables ISO
IEA 		UniProtKB:P35053 (PMID:11375980)
GO_REF:0000107 		RGD
Ensembl		 PMID:11375980 GO_REF:0000107 NCBI chr14:62,616,337...62,955,934
Ensembl chr14:62,617,067...62,955,948 		JBrowse link
chondroitin sulfate proteoglycan binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptn pleiotrophin IPI RGD PMID:20369290 RGD:9831444 NCBI chr 4:65,293,731...65,375,572
Ensembl chr 4:65,293,734...65,375,456 		JBrowse link
G Ptprf protein tyrosine phosphatase, receptor type, F enables ISO PR:Q62059 (PMID:21976490) RGD PMID:21976490 NCBI chr 5:131,741,959...131,824,000
Ensembl chr 5:131,742,754...131,810,023 		JBrowse link
G Sema5a semaphorin 5A enables IMP PMID:15603739 UniProt PMID:15603739 RGD:8553809 NCBI chr 2:85,020,724...85,451,938
Ensembl chr 2:83,309,843...83,741,084 		JBrowse link
heparan sulfate proteoglycan binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agrn agrin enables ISS
ISO 		GO_REF:0000024
(PMID:12773545) 		UniProt
RGD		 PMID:12773545 GO_REF:0000024 NCBI chr 5:166,749,306...166,782,212
Ensembl chr 5:166,749,310...166,786,003 		JBrowse link
G Apoe apolipoprotein E enables ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:23676495), (PMID:7683668), (PMID:9488694) 		UniProt
Ensembl
RGD		 PMID:7683668 PMID:9488694 PMID:23676495 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:79,353,924...79,357,852
Ensembl chr 1:79,353,916...79,357,932 		JBrowse link
G App amyloid beta precursor protein enables ISO (PMID:21289173) RGD PMID:21289173 NCBI chr11:24,019,774...24,236,584
Ensembl chr11:24,019,778...24,236,561 		JBrowse link
G Atp1a3 ATPase Na+/K+ transporting subunit alpha 3 enables ISO UniProtKB:A2ASQ1 (PMID:19376779) RGD PMID:19376779 NCBI chr 1:80,572,790...80,601,936
Ensembl chr 1:80,572,796...80,601,918 		JBrowse link
G Cfh complement factor H enables ISO (PMID:22471560) RGD PMID:22471560 NCBI chr13:51,512,376...51,613,829
Ensembl chr13:51,511,828...51,613,838 		JBrowse link
G Chrd chordin enables ISO (PMID:15381701) RGD PMID:15381701 NCBI chr11:80,171,994...80,181,166
Ensembl chr11:80,171,994...80,180,673 		JBrowse link
G Comp cartilage oligomeric matrix protein enables ISO
IEA 		(PMID:17588949)
GO_REF:0000107 		RGD
Ensembl		 PMID:17588949 GO_REF:0000107 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,047,207...19,055,845 		JBrowse link
G Fbln7 fibulin 7 enables ISO (PMID:29730503) RGD PMID:29730503 NCBI chr 3:116,111,581...116,145,839
Ensembl chr 3:116,111,677...116,147,983 		JBrowse link
G Fst follistatin IDA RGD PMID:12867435 RGD:1601260 NCBI chr 2:46,123,260...46,130,584
Ensembl chr 2:46,123,439...46,130,571 		JBrowse link
G Hpse2 heparanase 2 (inactive) enables ISO
IEA 		(PMID:20576607)
GO_REF:0000107 		RGD
Ensembl		 PMID:20576607 GO_REF:0000107 NCBI chr 1:241,582,904...242,284,348
Ensembl chr 1:241,583,187...242,246,118 		JBrowse link
G Hrg histidine-rich glycoprotein enables ISS
ISO 		GO_REF:0000024
(PMID:15138272), (PMID:16436387) 		UniProt
RGD		 PMID:15138272 PMID:16436387 GO_REF:0000024 NCBI chr11:78,054,488...78,069,402
Ensembl chr11:78,054,498...78,069,389 		JBrowse link
G Hrgl1 histidine-rich glycoprotein like 1 enables ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:78,039,371...78,049,353
Ensembl chr11:78,039,376...78,049,353 		JBrowse link
G Itgam integrin subunit alpha M enables ISO (PMID:8043862) RGD PMID:8043862 NCBI chr 1:182,659,047...182,709,501
Ensembl chr 1:182,659,000...182,709,503 		JBrowse link
G Lipc lipase C, hepatic type IMP RGD PMID:15102889 RGD:1580511 NCBI chr 8:80,390,470...80,516,463
Ensembl chr 8:71,509,635...71,635,464 		JBrowse link
G Lpl lipoprotein lipase enables ISO
ISS
IEA 		(PMID:11342582)
GO_REF:0000024
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:11342582 GO_REF:0000024 GO_REF:0000107 NCBI chr16:20,830,055...20,853,855
Ensembl chr16:20,829,465...20,855,249 		JBrowse link
G Lrrtm4 leucine rich repeat transmembrane neuronal 4 enables ISO (PMID:23911104) RGD PMID:23911104 NCBI chr 4:112,545,874...113,338,713
Ensembl chr 4:112,545,917...113,335,865 		JBrowse link
G Pla2g2d phospholipase A2, group IID enables ISO (PMID:19564598) RGD PMID:19564598 NCBI chr 5:151,016,010...151,022,531
Ensembl chr 5:151,018,870...151,022,525 		JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C enables ISO (PMID:8043862) RGD PMID:8043862 NCBI chr13:49,596,193...49,708,283
Ensembl chr13:49,596,193...49,708,692 		JBrowse link
G Ptprs protein tyrosine phosphatase, receptor type, S enables ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 9:1,245,408...1,307,015
Ensembl chr 9:1,245,410...1,306,947 		JBrowse link
G Sema5a semaphorin 5A enables IMP PMID:15603739 UniProt PMID:15603739 RGD:8553809 NCBI chr 2:85,020,724...85,451,938
Ensembl chr 2:83,309,843...83,741,084 		JBrowse link
G Slit1 slit guidance ligand 1 IDA RGD PMID:10364234 RGD:68764 NCBI chr 1:240,409,559...240,558,127
Ensembl chr 1:240,409,561...240,558,127 		JBrowse link
G Slit2 slit guidance ligand 2 IDA RGD PMID:10364234 RGD:68764 NCBI chr14:62,616,337...62,955,934
Ensembl chr14:62,617,067...62,955,948 		JBrowse link
syndecan binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin enables ISO (PMID:15381701) RGD PMID:15381701 NCBI chr11:80,171,994...80,181,166
Ensembl chr11:80,171,994...80,180,673 		JBrowse link
G Gpnmb glycoprotein nmb enables ISO UniProtKB:P31431 (PMID:19350579) RGD PMID:19350579 NCBI chr 4:78,010,247...78,031,491
Ensembl chr 4:78,010,197...78,049,367 		JBrowse link
G Hpse heparanase enables ISO
IEA 		(PMID:15292202)
GO_REF:0000107 		RGD
Ensembl		 PMID:15292202 GO_REF:0000107 NCBI chr14:8,896,593...8,937,011
Ensembl chr14:8,896,593...8,937,010 		JBrowse link
G Nf1 neurofibromin 1 IPI RGD PMID:11356864 PMID:11356864 RGD:1599282, RGD:1599282 NCBI chr10:64,803,986...65,037,086
Ensembl chr10:64,306,301...64,536,658 		JBrowse link
G Ptn pleiotrophin enables IPI PMID:9817766 UniProt PMID:9817766 RGD:14397563 NCBI chr 4:65,293,731...65,375,572
Ensembl chr 4:65,293,734...65,375,456 		JBrowse link
G Sdcbp syndecan binding protein enables IPI
ISO
IBA 		UniProtKB:P34741 (PMID:18256285), (PMID:22660413)
GO_REF:0000033 		RGD
GO_Central		 PMID:18256285 PMID:22660413 PMID:11152476 GO_REF:0000033, RGD:633988 NCBI chr 5:19,473,499...19,517,188
Ensembl chr 5:19,489,961...19,527,572 		JBrowse link
G Sema5a semaphorin 5A enables IPI PMID:15603739 UniProt PMID:15603739 RGD:8553809 NCBI chr 2:85,020,724...85,451,938
Ensembl chr 2:83,309,843...83,741,084 		JBrowse link
G Tnc tenascin C enables ISO
IEA 		(PMID:8769660)
GO_REF:0000107 		RGD
Ensembl		 PMID:8769660 GO_REF:0000107 NCBI chr 5:77,375,851...77,460,712
Ensembl chr 5:77,375,851...77,460,624 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 21102
    binding 18100
      carbohydrate derivative binding 2377
        proteoglycan binding 39
          chondroitin sulfate proteoglycan binding 3
          heparan sulfate proteoglycan binding 22
          syndecan binding 8
paths to the root