ONTOLOGY REPORT - ANNOTATIONS |
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Term: | positive T cell selection |
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Accession: | GO:0043368
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browse the term
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Definition: | The process of sparing immature T cells which react with self-MHC protein complexes with low affinity levels from apoptotic death. |
Synonyms: | exact_synonym: | positive T lymphocyte selection |
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Bcl11b |
BCL11 transcription factor B |
acts_upstream_of_or_within |
ISO |
MGI:3767620 (PMID:17998389) |
RGD |
PMID:17998389 |
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NCBI chr 6:132,598,968...132,692,123
Ensembl chr 6:126,834,531...126,928,224
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Braf |
B-Raf proto-oncogene, serine/threonine kinase |
acts_upstream_of_or_within |
ISO |
MGI:3711006 (PMID:23334952) |
RGD |
PMID:23334952 |
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NCBI chr 4:69,329,772...69,476,931
Ensembl chr 4:68,384,649...68,510,463
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Themis |
thymocyte selection associated |
involved_in |
ISO |
(PMID:19597497), (PMID:19597498), (PMID:19597499), (PMID:19805304) |
RGD |
PMID:19597497 PMID:19597498 PMID:19597499 PMID:19805304 |
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NCBI chr 1:18,251,136...18,483,851
Ensembl chr 1:16,432,631...16,664,329
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Braf |
B-Raf proto-oncogene, serine/threonine kinase |
acts_upstream_of_or_within |
ISO |
MGI:1857579 (PMID:18228248) |
RGD |
PMID:18228248 |
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NCBI chr 4:69,329,772...69,476,931
Ensembl chr 4:68,384,649...68,510,463
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Cyld |
CYLD lysine 63 deubiquitinase |
acts_upstream_of_or_within |
ISO |
MGI:3664438 (PMID:16501569) |
RGD |
PMID:16501569 |
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NCBI chr19:34,487,491...34,547,311
Ensembl chr19:18,314,019...18,373,658
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Shh |
sonic hedgehog signaling molecule |
involved_in |
ISS ISO IEA |
GO_REF:0000024 (PMID:17227833) GO_REF:0000107 |
UniProt RGD Ensembl |
PMID:17227833 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170
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Ctsl |
cathepsin L |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:9545226) |
UniProt RGD |
PMID:9545226 |
GO_REF:0000024 |
NCBI chr17:770,104...776,266
Ensembl chr17:764,309...770,548
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Tox |
thymocyte selection-associated high mobility group box |
involved_in |
ISO |
(PMID:18195075) |
RGD |
PMID:18195075 |
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NCBI chr 5:24,672,487...24,968,754
Ensembl chr 5:19,874,467...20,171,272
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Tox |
thymocyte selection-associated high mobility group box |
involved_in |
ISO |
(PMID:18195075) |
RGD |
PMID:18195075 |
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NCBI chr 5:24,672,487...24,968,754
Ensembl chr 5:19,874,467...20,171,272
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Bcl2 |
BCL2, apoptosis regulator |
involved_in acts_upstream_of_or_within |
IEA ISO |
GO_REF:0000107 MGI:2156165 (PMID:8170972) |
Ensembl RGD |
PMID:8170972 |
GO_REF:0000107 |
NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743 Ensembl chr13:22,684,989...22,853,743
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Tox |
thymocyte selection-associated high mobility group box |
involved_in |
ISO |
(PMID:11850626), (PMID:15078895) |
RGD |
PMID:11850626 PMID:15078895 |
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NCBI chr 5:24,672,487...24,968,754
Ensembl chr 5:19,874,467...20,171,272
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Ptpn2 |
protein tyrosine phosphatase, non-receptor type 2 |
involved_in |
ISS ISO IEA |
GO_REF:0000024 (PMID:22080863) GO_REF:0000107 |
UniProt RGD Ensembl |
PMID:22080863 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr18:63,498,890...63,564,571
Ensembl chr18:61,229,014...61,294,627
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Cd69 |
Cd69 molecule |
involved_in |
ISO |
(PMID:24752896) |
RGD |
PMID:24752896 |
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NCBI chr 4:164,411,485...164,419,403
Ensembl chr 4:162,725,446...162,733,542
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Jak3 |
Janus kinase 3 |
involved_in |
ISO IEA |
(PMID:20696842) GO_REF:0000107 |
RGD Ensembl |
PMID:20696842 |
GO_REF:0000107 |
NCBI chr16:18,418,807...18,432,515
Ensembl chr16:18,386,405...18,398,536
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Lgals1 |
galectin 1 |
involved_in |
ISO IEA |
(PMID:24752896) GO_REF:0000107 |
RGD Ensembl |
PMID:24752896 |
GO_REF:0000107 |
NCBI chr 7:112,365,695...112,368,801
Ensembl chr 7:110,481,392...110,488,345
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Loxl3 |
lysyl oxidase-like 3 |
involved_in |
ISO |
(PMID:28065600) |
RGD |
PMID:28065600 |
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NCBI chr 4:117,098,358...117,114,673
Ensembl chr 4:115,540,685...115,557,466
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Stat5a |
signal transducer and activator of transcription 5A |
involved_in |
ISO IEA |
(PMID:20696842) GO_REF:0000107 |
RGD Ensembl |
PMID:20696842 |
GO_REF:0000107 |
NCBI chr10:86,285,859...86,310,187
Ensembl chr10:85,785,537...85,809,866
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Tbx21 |
T-box transcription factor 21 |
involved_in |
ISO |
(PMID:21151104) |
RGD |
PMID:21151104 |
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NCBI chr10:82,578,751...82,595,253
Ensembl chr10:82,082,322...82,098,831
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Tnfsf18 |
TNF superfamily member 18 |
involved_in |
ISO |
(PMID:24107315) |
RGD |
PMID:24107315 |
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NCBI chr13:73,833,478...73,907,249
Ensembl chr13:73,831,252...73,843,169
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Brd2 |
bromodomain containing 2 |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:28262505) |
UniProt RGD |
PMID:28262505 |
GO_REF:0000024 |
NCBI chr20:4,728,282...4,737,286
Ensembl chr20:4,728,151...4,735,388
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Brd4 |
bromodomain containing 4 |
involved_in |
ISO |
(PMID:28262505) |
RGD |
PMID:28262505 |
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NCBI chr 7:11,866,997...11,946,575
Ensembl chr 7:11,216,446...11,295,539
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Ep300 |
E1A binding protein p300 |
involved_in |
ISO |
(PMID:28262505) |
RGD |
PMID:28262505 |
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NCBI chr 7:114,987,857...115,058,652
Ensembl chr 7:113,106,247...113,136,088 Ensembl chr 7:113,106,247...113,136,088
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Il23a |
interleukin 23 subunit alpha |
involved_in |
IBA ISO |
GO_REF:0000033 (PMID:19501566) |
GO_Central RGD |
PMID:19501566 |
GO_REF:0000033 |
NCBI chr 7:1,306,320...1,308,434
Ensembl chr 7:721,809...723,923
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Opa1 |
OPA1, mitochondrial dynamin like GTPase |
involved_in |
ISS IEA ISO |
GO_REF:0000024 GO_REF:0000107 (PMID:36171294) |
UniProt Ensembl RGD |
PMID:36171294 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr11:84,612,943...84,690,025
Ensembl chr11:71,109,873...71,185,109
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Cd1d1 |
CD1d1 molecule |
acts_upstream_of_or_within |
ISO |
MGI:2180711 (PMID:9133426) |
RGD |
PMID:9133426 |
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NCBI chr 2:174,721,522...174,725,029
Ensembl chr 2:172,423,582...172,427,089
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Cd3d |
CD3 delta subunit of T-cell receptor complex |
involved_in |
ISS IBA ISO |
GO_REF:0000024 GO_REF:0000033 (PMID:9135151) |
UniProt GO_Central RGD |
PMID:9135151 |
GO_REF:0000024 GO_REF:0000033 |
NCBI chr 8:54,184,573...54,190,112
Ensembl chr 8:45,288,749...45,301,809
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Cd3e |
CD3 epsilon subunit of T-cell receptor complex |
involved_in |
IBA |
GO_REF:0000033 |
GO_Central |
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GO_REF:0000033 |
NCBI chr 8:54,200,617...54,211,770
Ensembl chr 8:45,303,852...45,315,022
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Cd3g |
CD3 gamma subunit of T-cell receptor complex |
involved_in |
IBA |
GO_REF:0000033 |
GO_Central |
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GO_REF:0000033 |
NCBI chr 8:54,177,572...54,184,087
Ensembl chr 8:45,281,204...45,287,147
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Cd74 |
CD74 molecule |
acts_upstream_of_or_within |
ISO |
MGI:1927205|MGI:1927530 (PMID:7679955), (PMID:8598040), (PMID:9432982) |
RGD |
PMID:7679955 PMID:8598040 PMID:9432982 |
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NCBI chr18:56,527,071...56,536,406
Ensembl chr18:54,256,778...54,266,003
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Dock2 |
dedicator of cytokinesis 2 |
acts_upstream_of_or_within |
ISO |
MGI:2152031 (PMID:12871644) |
RGD |
PMID:12871644 |
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NCBI chr10:18,827,237...19,244,832
Ensembl chr10:18,827,239...19,244,808
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Itpkb |
inositol-trisphosphate 3-kinase B |
acts_upstream_of_or_within |
ISO |
MGI:3039799 (PMID:15064401) |
RGD |
PMID:15064401 |
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NCBI chr13:94,601,072...94,696,180
Ensembl chr13:92,069,216...92,162,004
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Nfatc3 |
nuclear factor of activated T-cells 3 |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:17579027) |
UniProt RGD |
PMID:17579027 |
GO_REF:0000024 |
NCBI chr19:50,870,464...50,944,992
Ensembl chr19:33,960,852...34,035,150
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Ptprc |
protein tyrosine phosphatase, receptor type, C |
acts_upstream_of_or_within |
ISO |
MGI:1857277 (PMID:8666928) |
RGD |
PMID:8666928 |
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NCBI chr13:52,147,717...52,259,810
Ensembl chr13:49,596,193...49,708,692
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RT1-DMa |
RT1 class II, locus DMa |
acts_upstream_of_or_within |
ISO |
MGI:1861933|MGI:2384509|MGI:2652160 (PMID:8598040), (PMID:8598041), (PMID:8638109), (PMID:9432982) |
RGD |
PMID:8598040 PMID:8598041 PMID:8638109 PMID:9432982 |
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NCBI chr20:4,707,028...4,710,432
Ensembl chr20:4,707,028...4,710,432
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Shh |
sonic hedgehog signaling molecule |
involved_in |
IEA ISO ISS |
GO_REF:0000107 (PMID:17227833) GO_REF:0000024 |
Ensembl RGD UniProt |
PMID:17227833 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170
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Srf |
serum response factor |
acts_upstream_of_or_within |
ISO |
MGI:2449947|MGI:3046779 (PMID:21098124) |
RGD |
PMID:21098124 |
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NCBI chr 9:21,924,050...21,933,338
Ensembl chr 9:14,426,472...14,435,733
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Stk11 |
serine/threonine kinase 11 |
acts_upstream_of_or_within |
ISO |
MGI:2386448|MGI:2387402|MGI:3054844 (PMID:21487392) |
RGD |
PMID:21487392 |
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NCBI chr 7:10,225,204...10,241,965
Ensembl chr 7:9,575,269...9,591,315
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Zap70 |
zeta chain of T cell receptor associated protein kinase 70 |
acts_upstream_of_or_within |
ISO |
(PMID:7630421) MGI:2677447 (PMID:7630421) |
RGD |
PMID:7630421 |
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NCBI chr 9:46,485,605...46,507,552
Ensembl chr 9:38,989,750...39,011,700
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Foxn1 |
forkhead box N1 |
involved_in |
ISO |
(PMID:24184560) |
RGD |
PMID:24184560 |
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NCBI chr10:63,749,461...63,778,468
Ensembl chr10:63,251,400...63,273,710
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Tox |
thymocyte selection-associated high mobility group box |
involved_in |
ISO |
(PMID:18195075) |
RGD |
PMID:18195075 |
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NCBI chr 5:24,672,487...24,968,754
Ensembl chr 5:19,874,467...20,171,272
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Il4 |
interleukin 4 |
acts_upstream_of_or_within |
ISO |
MGI:103034 (PMID:20706986) |
RGD |
PMID:20706986 |
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NCBI chr10:38,272,003...38,277,549
Ensembl chr10:37,771,203...37,776,750
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Mtor |
mechanistic target of rapamycin kinase |
involved_in |
IEA ISO |
GO_REF:0000107 (PMID:26410627) |
Ensembl RGD |
PMID:26410627 |
GO_REF:0000107 |
NCBI chr 5:164,167,985...164,277,438
Ensembl chr 5:158,884,804...158,994,311
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Spn |
sialophorin |
involved_in |
ISO ISS |
(PMID:18036228) GO_REF:0000024 |
RGD UniProt |
PMID:18036228 |
GO_REF:0000024 |
NCBI chr 1:191,177,449...191,190,115
Ensembl chr 1:181,746,429...181,759,628
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Stat6 |
signal transducer and activator of transcription 6 |
acts_upstream_of_or_within |
ISO |
MGI:96556 (PMID:20706986) |
RGD |
PMID:20706986 |
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NCBI chr 7:65,365,505...65,382,825
Ensembl chr 7:63,479,642...63,498,495
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Tbx21 |
T-box transcription factor 21 |
involved_in |
ISO |
(PMID:10761931) |
RGD |
PMID:10761931 |
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NCBI chr10:82,578,751...82,595,253
Ensembl chr10:82,082,322...82,098,831
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Batf |
basic leucine zipper ATF-like transcription factor |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:19578362), (PMID:22983707) |
UniProt RGD |
PMID:19578362 PMID:22983707 |
GO_REF:0000024 |
NCBI chr 6:111,084,717...111,107,052
Ensembl chr 6:105,353,715...105,376,051
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Il6 |
interleukin 6 |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:16990136), (PMID:27893700) |
UniProt RGD |
PMID:16990136 PMID:27893700 |
GO_REF:0000024 |
NCBI chr 4:5,889,999...5,894,575
Ensembl chr 4:5,213,394...5,219,178
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Il6r |
interleukin 6 receptor |
involved_in |
ISS IEA ISO |
GO_REF:0000024 GO_REF:0000107 (PMID:27893700) |
UniProt Ensembl RGD |
PMID:27893700 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr 2:177,582,020...177,646,705
Ensembl chr 2:175,298,686...175,347,536
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Irf4 |
interferon regulatory factor 4 |
involved_in |
ISO |
(PMID:22983707) |
RGD |
PMID:22983707 |
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NCBI chr17:33,930,460...33,948,842
Ensembl chr17:33,721,811...33,740,070
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Ly9 |
lymphocyte antigen 9 |
involved_in |
ISO |
(PMID:22184727) |
RGD |
PMID:22184727 |
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NCBI chr13:86,610,762...86,633,314
Ensembl chr13:84,079,458...84,100,823
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Otud5 |
OTU deubiquitinase 5 |
acts_upstream_of_or_within |
ISO |
MGI:2386448|MGI:5752247 (PMID:25470037) |
RGD |
PMID:25470037 |
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NCBI chr X:17,296,750...17,331,257
Ensembl chr X:14,626,164...14,659,573
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Slamf6 |
SLAM family member 6 |
involved_in |
ISO |
(PMID:22184727) |
RGD |
PMID:22184727 |
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NCBI chr13:86,916,956...86,937,697
Ensembl chr13:84,383,742...84,405,300
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Stat3 |
signal transducer and activator of transcription 3 |
involved_in |
ISS ISO IEA |
GO_REF:0000024 (PMID:28065600) GO_REF:0000107 |
UniProt RGD Ensembl |
PMID:28065600 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr10:86,311,528...86,363,513
Ensembl chr10:85,811,218...85,863,057
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Term paths to the root
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