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ONTOLOGY REPORT - ANNOTATIONS

Term:lysosomal lumen
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Accession:GO:0043202 term browser browse the term
Definition:The volume enclosed within the lysosomal membrane.
Synonyms:never_in_taxon: NCBITaxon:4751 ! Fungi


show annotations for term's descendants           Sort by:
lysosomal lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acp2 acid phosphatase 2, lysosomal located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:97,630,654...97,642,601
Ensembl chr 3:97,631,326...97,642,565 		JBrowse link
G Cubn cubilin IDA RGD PMID:15578272 RGD:2317835 NCBI chr17:81,293,619...81,501,694
Ensembl chr17:81,293,619...81,501,694 		JBrowse link
G Epdr1 ependymin related 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr17:50,029,591...50,054,254
Ensembl chr17:50,029,256...50,054,250 		JBrowse link
G Faslg Fas ligand located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:76,680,885...76,706,042
Ensembl chr13:76,688,243...76,695,503 		JBrowse link
G Gba1 glucosylceramidase beta 1 located_in IEA
ISO 		GO_REF:0000107
(PMID:18022370) 		Ensembl
RGD		 PMID:18022370 GO_REF:0000107 NCBI chr 2:176,902,141...176,916,015
Ensembl chr 2:176,907,154...176,916,985 		JBrowse link
G Gusb glucuronidase, beta is_active_in ISO MGI:1856041 (PMID:23897660), (PMID:8200966) RGD PMID:8200966 PMID:23897660 NCBI chr12:32,337,281...32,350,838
Ensembl chr12:32,334,075...32,363,024 		JBrowse link
G Hgsnat heparan-alpha-glucosaminide N-acetyltransferase is_active_in IEA
ISO 		GO_REF:0000107
(PMID:16960811) 		Ensembl
RGD		 PMID:16960811 GO_REF:0000107 NCBI chr16:72,807,967...72,840,180
Ensembl chr16:72,807,849...72,840,176 		JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 located_in TAS
IEA 		Reactome:R-RNO-9626236
GO_REF:0000117
Reactome:R-RNO-9626030
Reactome:R-RNO-9622851
Reactome:R-RNO-9626275
Reactome:R-RNO-9626239
Reactome:R-RNO-9626254
Reactome:R-RNO-9625183
Reactome:R-RNO-9626028
Reactome:R-RNO-9624154
Reactome:R-RNO-9625160
Reactome:R-RNO-9625173
Reactome:R-RNO-9626250 		Reactome
UniProt		 GO_REF:0000117 Reactome:R-RNO-9622851 Reactome:R-RNO-9624154 Reactome:R-RNO-9625160 Reactome:R-RNO-9625173 Reactome:R-RNO-9625183 Reactome:R-RNO-9626028 Reactome:R-RNO-9626030 Reactome:R-RNO-9626236 Reactome:R-RNO-9626239 Reactome:R-RNO-9626250 Reactome:R-RNO-9626254 Reactome:R-RNO-9626275 NCBI chr 6:135,523,604...135,529,687
Ensembl chr 6:135,523,616...135,528,499 		JBrowse link
G Hsp90aa1-ps16 heat shock protein 90 alpha family class A member 1, pseudogene 16 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr13:3,552,293...3,555,069
Ensembl chr13:3,552,806...3,554,788 		JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 located_in TAS
IEA 		Reactome:R-RNO-9626236
GO_REF:0000117
Reactome:R-RNO-9626239
Reactome:R-RNO-9626250
Reactome:R-RNO-9626254
Reactome:R-RNO-9626030
Reactome:R-RNO-9626275
Reactome:R-RNO-9625160
Reactome:R-RNO-9625183
Reactome:R-RNO-9624154
Reactome:R-RNO-9626028
Reactome:R-RNO-9622851
Reactome:R-RNO-9625173 		Reactome
UniProt		 GO_REF:0000117 Reactome:R-RNO-9622851 Reactome:R-RNO-9624154 Reactome:R-RNO-9625160 Reactome:R-RNO-9625173 Reactome:R-RNO-9625183 Reactome:R-RNO-9626028 Reactome:R-RNO-9626030 Reactome:R-RNO-9626236 Reactome:R-RNO-9626239 Reactome:R-RNO-9626250 Reactome:R-RNO-9626254 Reactome:R-RNO-9626275 NCBI chr 9:22,930,249...22,935,929
Ensembl chr 9:22,931,070...22,935,926 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 located_in TAS Reactome:R-RNO-9625173
Reactome:R-RNO-9626028
Reactome:R-RNO-9625160 		Reactome Reactome:R-RNO-9625160 Reactome:R-RNO-9625173 Reactome:R-RNO-9626028 NCBI chr 8:50,080,514...50,084,376
Ensembl chr 8:50,080,199...50,084,372 		JBrowse link
G Ids iduronate 2-sulfatase is_active_in
located_in 		IEA
ISO 		GO_REF:0000107
(PMID:17876721)
GO_REF:0000117 		Ensembl
RGD
UniProt		 PMID:17876721 GO_REF:0000107 GO_REF:0000117 NCBI chr  X:154,070,781...154,093,681
Ensembl chr  X:154,070,781...154,091,444 		JBrowse link
G Idua alpha-L-iduronidase located_in
is_active_in 		IEA
ISO 		GO_REF:0000117
MGI:2176236|MGI:2651471 (PMID:17101178), (PMID:9660052) 		UniProt
RGD		 PMID:9660052 PMID:17101178 GO_REF:0000117 NCBI chr14:1,175,994...1,203,913
Ensembl chr14:1,176,577...1,204,066 		JBrowse link
G Lgmn legumain is_active_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:9872320) 		UniProt
Ensembl
RGD		 PMID:9872320 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:127,308,913...127,347,355
Ensembl chr 6:127,308,913...127,347,328 		JBrowse link
G Man2b1 mannosidase, alpha, class 2B, member 1 located_in IEA
ISO 		GO_REF:0000117
(PMID:21505070), (PMID:26048034) 		UniProt
RGD		 PMID:21505070 PMID:26048034 GO_REF:0000117 NCBI chr19:39,959,964...39,979,299
Ensembl chr19:39,959,965...39,979,246 		JBrowse link
G Man2b2 mannosidase, alpha, class 2B, member 2 is_active_in ISO (PMID:16115860) RGD PMID:16115860 NCBI chr14:78,193,797...78,218,802
Ensembl chr14:78,193,725...78,227,724 		JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase is_active_in IEA
ISO 		GO_REF:0000107
(PMID:15537895) 		Ensembl
RGD		 PMID:15537895 GO_REF:0000107 NCBI chr10:86,501,864...86,509,333
Ensembl chr10:86,501,836...86,509,315 		JBrowse link
G Neu1 neuraminidase 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr20:3,902,120...3,906,383
Ensembl chr20:3,902,120...3,906,383 		JBrowse link
G Nsg1 neuronal vesicle trafficking associated 1 located_in IDA
IEA 		PMID:28874679
GO_REF:0000044 		UniProt PMID:28874679 GO_REF:0000044, RGD:13432228 NCBI chr14:76,861,079...76,882,822
Ensembl chr14:76,860,746...76,883,390 		JBrowse link
G Nsg2 neuronal vesicle trafficking associated 2 located_in IDA
IEA 		PMID:28874679
GO_REF:0000044 		UniProt PMID:28874679 GO_REF:0000044, RGD:13432228 NCBI chr10:16,106,073...16,165,915
Ensembl chr10:16,147,325...16,165,915 		JBrowse link
G Pdgfrb platelet derived growth factor receptor beta located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr18:56,770,348...56,809,228
Ensembl chr18:56,770,348...56,809,233 		JBrowse link
G Plbd2 phospholipase B domain containing 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr12:41,723,372...41,742,554
Ensembl chr12:41,723,360...41,744,454 		JBrowse link
G Pld3 phospholipase D family, member 3 located_in ISO
IEA
ISS 		(PMID:30312375)
GO_REF:0000107
GO_REF:0000044
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:30312375 GO_REF:0000024 GO_REF:0000044 GO_REF:0000107 NCBI chr 1:91,949,465...91,971,834
Ensembl chr 1:91,949,467...91,961,207 		JBrowse link
G Rnase1 ribonuclease A family member 1, pancreatic located_in TAS Reactome:R-RNO-9625160
Reactome:R-RNO-9626028 		Reactome Reactome:R-RNO-9625160 Reactome:R-RNO-9626028 NCBI chr15:26,835,436...26,837,145
Ensembl chr15:26,835,463...26,837,248 		JBrowse link
G Rnaset2 ribonuclease T2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:55,133,532...55,150,701
Ensembl chr 1:55,117,492...55,150,701 		JBrowse link
G Scarb2 scavenger receptor class B, member 2 located_in IEA
ISO 		GO_REF:0000107
(PMID:18022370) 		Ensembl
RGD		 PMID:18022370 GO_REF:0000107 NCBI chr14:15,842,583...15,894,123
Ensembl chr14:15,842,515...15,896,671 		JBrowse link
G Sgsh N-sulfoglucosamine sulfohydrolase is_active_in IEA
ISO 		GO_REF:0000107
MGI:2151181 (PMID:10561464) 		Ensembl
RGD		 PMID:10561464 GO_REF:0000107 NCBI chr10:105,095,336...105,112,037
Ensembl chr10:105,095,336...105,112,009 		JBrowse link
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 located_in ISO
IEA 		(PMID:25719862)
GO_REF:0000107 		RGD
Ensembl		 PMID:25719862 GO_REF:0000107 NCBI chr 1:104,992,518...105,012,851
Ensembl chr 1:104,992,442...105,012,851 		JBrowse link
acrosomal lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spata31 spermatogenesis associated 31 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr17:249,433...255,219
Ensembl chr17:249,439...255,219 		JBrowse link
G Zp3r zona pellucida 3 receptor located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:44,572,283...44,617,101
Ensembl chr13:44,572,283...44,617,077 		JBrowse link
lysosomal matrix term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hspa8 heat shock protein family A (Hsp70) member 8 located_in IDA PMID:18644871 RGD
MGI		 PMID:9038169 PMID:18644871 RGD:10059368, RGD:10412301 NCBI chr 8:50,080,514...50,084,376
Ensembl chr 8:50,080,199...50,084,372 		JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 located_in IDA PMID:18644871 MGI PMID:18644871 RGD:10412301 NCBI chr  X:122,038,734...122,087,745
Ensembl chr  X:121,922,187...122,087,675 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19485
    cellular anatomical structure 19353
      cytoplasm 11910
        vacuole 695
          vacuolar lumen 36
            lysosomal lumen 31
              acrosomal lumen 2
              endolysosome lumen 0
              lysosomal matrix 2
Path 2
Term Annotations click to browse term
  cellular_component 19485
    cellular anatomical structure 19353
      organelle 13686
        intracellular organelle 13261
          intracellular membrane-bounded organelle 11899
            vacuole 695
              lytic vacuole 578
                lysosome 578
                  lysosomal lumen 31
                    acrosomal lumen 2
                    endolysosome lumen 0
                    lysosomal matrix 2
paths to the root