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ONTOLOGY REPORT - ANNOTATIONS


Term:lysosomal lumen
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Accession:GO:0043202 term browser browse the term
Definition:The volume enclosed within the lysosomal membrane.
Synonyms:never_in_taxon: NCBITaxon:4751 ! Fungi



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lysosomal lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acp2 acid phosphatase 2, lysosomal located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:77,175,022...77,185,180 JBrowse link
G Cubn cubilin IDA RGD PMID:15578272 RGD:2317835 NCBI chr17:76,385,046...76,593,133 JBrowse link
G Epdr1 ependymin related 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr17:45,333,932...45,358,597 JBrowse link
G Faslg Fas ligand located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:76,680,885...76,706,042 JBrowse link
G Gba1 glucosylceramidase beta 1 located_in ISO (PMID:18022370) RGD PMID:18022370 NCBI chr 2:176,902,141...176,916,015 JBrowse link
G Gusb glucuronidase, beta is_active_in ISO MGI:1856041 (PMID:23897660), (PMID:8200966) RGD PMID:8200966 PMID:23897660 NCBI chr12:32,337,281...32,350,838 JBrowse link
G Hgsnat heparan-alpha-glucosaminide N-acetyltransferase is_active_in ISO (PMID:16960811) RGD PMID:16960811 NCBI chr16:66,105,233...66,137,444 JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 located_in TAS Reactome:R-RNO-9626236
Reactome:R-RNO-9626030
Reactome:R-RNO-9622851
Reactome:R-RNO-9626275
Reactome:R-RNO-9626239
Reactome:R-RNO-9626254
Reactome:R-RNO-9625183
Reactome:R-RNO-9626028
Reactome:R-RNO-9624154
Reactome:R-RNO-9625160
Reactome:R-RNO-9625173
Reactome:R-RNO-9626250
Reactome Reactome:R-RNO-9622851 Reactome:R-RNO-9624154 Reactome:R-RNO-9625160 Reactome:R-RNO-9625173 Reactome:R-RNO-9625183 Reactome:R-RNO-9626028 Reactome:R-RNO-9626030 Reactome:R-RNO-9626236 Reactome:R-RNO-9626239 Reactome:R-RNO-9626250 Reactome:R-RNO-9626254 Reactome:R-RNO-9626275 NCBI chr 6:135,523,604...135,529,687 JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 located_in TAS Reactome:R-RNO-9626236
Reactome:R-RNO-9626239
Reactome:R-RNO-9626250
Reactome:R-RNO-9626254
Reactome:R-RNO-9626030
Reactome:R-RNO-9626275
Reactome:R-RNO-9625160
Reactome:R-RNO-9625183
Reactome:R-RNO-9624154
Reactome:R-RNO-9626028
Reactome:R-RNO-9622851
Reactome:R-RNO-9625173
Reactome Reactome:R-RNO-9622851 Reactome:R-RNO-9624154 Reactome:R-RNO-9625160 Reactome:R-RNO-9625173 Reactome:R-RNO-9625183 Reactome:R-RNO-9626028 Reactome:R-RNO-9626030 Reactome:R-RNO-9626236 Reactome:R-RNO-9626239 Reactome:R-RNO-9626250 Reactome:R-RNO-9626254 Reactome:R-RNO-9626275 NCBI chr 9:22,930,249...22,935,929 JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 located_in TAS Reactome:R-RNO-9625173
Reactome:R-RNO-9626028
Reactome:R-RNO-9625160
Reactome Reactome:R-RNO-9625160 Reactome:R-RNO-9625173 Reactome:R-RNO-9626028 NCBI chr 8:50,080,514...50,084,376 JBrowse link
G Ids iduronate 2-sulfatase is_active_in ISO (PMID:17876721) RGD PMID:17876721 NCBI chr  X:149,025,976...149,046,641 JBrowse link
G Idua alpha-L-iduronidase is_active_in ISO MGI:2176236|MGI:2651471 (PMID:17101178), (PMID:9660052) RGD PMID:9660052 PMID:17101178 NCBI chr14:1,031,588...1,059,494 JBrowse link
G Lgmn legumain is_active_in
located_in
ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:9872320)
UniProt
Ensembl
RGD
PMID:9872320 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:121,544,048...121,582,495 JBrowse link
G Man2b1 mannosidase, alpha, class 2B, member 1 is_active_in ISO (PMID:9305783) RGD PMID:9305783 NCBI chr19:23,055,092...23,074,398 JBrowse link
G Manba mannosidase beta is_active_in ISO (PMID:29773673) RGD PMID:29773673 NCBI chr 2:223,910,432...224,002,988 JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase is_active_in ISO (PMID:15537895) RGD PMID:15537895 NCBI chr10:86,001,545...86,009,049 JBrowse link
G Neu1 neuraminidase 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr20:3,897,480...3,901,745 JBrowse link
G Nsg1 neuronal vesicle trafficking associated 1 located_in IDA
IEA
PMID:28874679
GO_REF:0000044
UniProt PMID:28874679 GO_REF:0000044, RGD:13432228 NCBI chr14:72,648,771...72,670,521 JBrowse link
G Nsg2 neuronal vesicle trafficking associated 2 located_in IDA PMID:28874679 UniProt PMID:28874679 RGD:13432228 NCBI chr10:15,601,594...15,661,441 JBrowse link
G Pdgfrb platelet derived growth factor receptor beta located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr18:56,770,348...56,809,228 JBrowse link
G Plbd2 phospholipase B domain containing 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr12:36,062,802...36,081,984 JBrowse link
G Pld3 phospholipase D family, member 3 located_in ISO
IEA
ISS
(PMID:30312375)
GO_REF:0000044
GO_REF:0000024
RGD
UniProt
PMID:30312375 GO_REF:0000024 GO_REF:0000044 NCBI chr 1:82,821,863...82,844,280 JBrowse link
G Rnase1 ribonuclease A family member 1, pancreatic located_in TAS Reactome:R-RNO-9625160
Reactome:R-RNO-9626028
Reactome Reactome:R-RNO-9625160 Reactome:R-RNO-9626028 NCBI chr15:24,361,924...24,363,633 JBrowse link
G Rnaset2 ribonuclease T2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:52,576,344...52,603,151 JBrowse link
G Rnaset2-ps1 ribonuclease T2, pseudogene 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:138,600,084...138,600,943 JBrowse link
G Scarb2 scavenger receptor class B, member 2 located_in IEA
ISO
GO_REF:0000107
(PMID:18022370)
Ensembl
RGD
PMID:18022370 GO_REF:0000107 NCBI chr14:15,558,271...15,609,813 JBrowse link
G Sgsh N-sulfoglucosamine sulfohydrolase is_active_in ISO MGI:2151181 (PMID:10561464) RGD PMID:10561464 NCBI chr10:104,596,810...104,613,510 JBrowse link
acrosomal lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spata31 spermatogenesis associated 31 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr17:243,648...249,434 JBrowse link
G Zp3r zona pellucida 3 receptor located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:42,019,998...42,064,836 JBrowse link
lysosomal matrix term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hspa8 heat shock protein family A (Hsp70) member 8 located_in IDA PMID:18644871 RGD
MGI
PMID:9038169 PMID:18644871 RGD:10059368, RGD:10412301 NCBI chr 8:50,080,514...50,084,376 JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 located_in IDA PMID:18644871 MGI PMID:18644871 RGD:10412301 NCBI chr  X:122,038,734...122,087,745 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21321
    cellular anatomical structure 21026
      cytoplasm 12254
        vacuole 672
          vacuolar lumen 34
            lysosomal lumen 30
              acrosomal lumen 2
              endolysosome lumen 0
              lysosomal matrix 2
Path 2
Term Annotations click to browse term
  cellular_component 21321
    cellular anatomical structure 21026
      organelle 14240
        intracellular organelle 13828
          intracellular membrane-bounded organelle 12253
            vacuole 672
              lytic vacuole 550
                lysosome 550
                  lysosomal lumen 30
                    acrosomal lumen 2
                    endolysosome lumen 0
                    lysosomal matrix 2
paths to the root