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ONTOLOGY REPORT - ANNOTATIONS

Term:dendritic shaft
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Accession:GO:0043198 term browser browse the term
Definition:Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines.
Synonyms:related_synonym: trunk
 xref: NIF_Subcellular:sao2034472720


show annotations for term's descendants           Sort by:
dendritic shaft term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi3bp ABI family member 3 binding protein located_in IDA PMID:22496823 ARUK-UCL PMID:22496823 RGD:42722000 NCBI chr11:57,381,282...57,597,989
Ensembl chr11:57,381,422...57,598,120 		JBrowse link
G Akap5 A-kinase anchoring protein 5 IDA RGD PMID:16510716 RGD:2313219 NCBI chr 6:100,787,169...100,796,712
Ensembl chr 6:100,790,148...100,796,620 		JBrowse link
G Ap1g2 adaptor related protein complex 1 subunit gamma 2 located_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr15:32,541,528...32,549,392
Ensembl chr15:32,541,528...32,549,280 		JBrowse link
G App amyloid beta precursor protein located_in ISO
IEA 		(PMID:11988176)
GO_REF:0000107 		RGD
Ensembl		 PMID:11988176 GO_REF:0000107 NCBI chr11:37,506,207...37,724,351
Ensembl chr11:37,506,408...37,722,971 		JBrowse link
G Arhgef2 Rho/Rac guanine nucleotide exchange factor 2 located_in ISO (PMID:15996550) RGD PMID:15996550 NCBI chr 2:176,358,909...176,416,178
Ensembl chr 2:176,358,904...176,417,646 		JBrowse link
G Arpc2 actin related protein 2/3 complex, subunit 2 IDA RGD PMID:18509026 RGD:11530067 NCBI chr 9:83,269,884...83,300,610
Ensembl chr 9:83,269,932...83,305,409 		JBrowse link
G Baiap2 BAR/IMD domain containing adaptor protein 2 IDA RGD PMID:24639075 RGD:11576288 NCBI chr10:105,721,371...105,788,549
Ensembl chr10:105,721,417...105,788,549 		JBrowse link
G Cacna1b calcium voltage-gated channel subunit alpha1 B IDA RGD PMID:11353727 RGD:1580151 NCBI chr 3:27,779,133...27,944,292
Ensembl chr 3:27,779,166...27,944,285 		JBrowse link
G Cacna1c calcium voltage-gated channel subunit alpha1 C located_in ISO (PMID:15090038) RGD PMID:15090038 NCBI chr 4:153,431,169...154,051,932
Ensembl chr 4:153,436,427...154,051,762 		JBrowse link
G Chrna7 cholinergic receptor nicotinic alpha 7 subunit IDA RGD PMID:12077196 RGD:1600985 NCBI chr 1:126,123,425...126,249,181
Ensembl chr 1:126,123,425...126,446,858 		JBrowse link
G Cnih2 cornichon family AMPA receptor auxiliary protein 2 located_in IDA PMID:19265014 UniProt PMID:19265014 RGD:8554136 NCBI chr 1:211,828,791...211,834,474
Ensembl chr 1:211,828,794...211,834,437 		JBrowse link
G Cnih3 cornichon family AMPA receptor auxiliary protein 3 located_in IDA PMID:19265014 UniProt PMID:19265014 RGD:8554136 NCBI chr13:95,548,440...95,739,500
Ensembl chr13:95,598,998...95,772,064 		JBrowse link
G Cript CXXC repeat containing interactor of PDZ3 domain IDA RGD PMID:9581762 RGD:632510 NCBI chr 6:13,334,978...13,342,934
Ensembl chr 6:13,334,954...13,345,044 		JBrowse link
G Ctnnb1 catenin beta 1 IDA RGD PMID:12123611 RGD:1299225 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:129,517,545...129,544,662 		JBrowse link
G Dbn1 drebrin 1 IDA RGD PMID:12878700 RGD:10398728 NCBI chr17:9,155,729...9,170,121
Ensembl chr17:9,155,787...9,170,122 		JBrowse link
G Dlg3 discs large MAGUK scaffold protein 3 located_in IDA PMID:12738960 UniProt PMID:12738960 RGD:8554028 NCBI chr  X:69,899,694...69,951,928
Ensembl chr  X:69,900,003...69,950,696 		JBrowse link
G Drd1 dopamine receptor D1 IDA RGD PMID:16228995 RGD:7248764 NCBI chr17:10,545,488...10,550,029
Ensembl chr17:10,545,111...10,567,166 		JBrowse link
G Drd4 dopamine receptor D4 IDA MMO:0000663 RGD PMID:11902112 RGD:728755 NCBI chr 1:205,825,937...205,829,124
Ensembl chr 1:205,826,049...205,830,458 		JBrowse link
G Epha4 Eph receptor A4 located_in IDA PMID:24658113 ARUK-UCL PMID:24658113 RGD:12911004 NCBI chr 9:86,263,982...86,406,744
Ensembl chr 9:86,263,982...86,406,755 		JBrowse link
G Exoc4 exocyst complex component 4 located_in IDA PMID:12738960 UniProt PMID:12738960 RGD:8554028 NCBI chr 4:62,774,896...63,551,541
Ensembl chr 4:62,774,935...63,552,943 		JBrowse link
G Flna filamin A IDA RGD PMID:22434607 RGD:7207403 NCBI chr  X:157,159,051...157,185,559
Ensembl chr  X:157,159,051...157,182,343 		JBrowse link
G Fubp3 far upstream element binding protein 3 IDA MMO:0000538 RGD PMID:23121659 RGD:12792285 NCBI chr 3:35,253,216...35,302,282
Ensembl chr 3:35,253,306...35,302,280 		JBrowse link
G Gabbr1 gamma-aminobutyric acid type B receptor subunit 1 IDA RGD PMID:17241134 RGD:2315460 NCBI chr20:1,469,779...1,499,352
Ensembl chr20:1,469,779...1,498,607 		JBrowse link
G Gipc1 GIPC PDZ domain containing family, member 1 located_in IEA
ISO 		GO_REF:0000107
(PMID:16819522) 		Ensembl
RGD		 PMID:16819522 GO_REF:0000107 NCBI chr19:41,380,125...41,392,078
Ensembl chr19:41,380,125...41,391,725 		JBrowse link
G Gper1 G protein-coupled estrogen receptor 1 located_in IDA PMID:22919059
PMID:23822769 		UniProt PMID:22919059 PMID:23822769 RGD:8553395, RGD:8554508 NCBI chr12:20,331,073...20,336,527
Ensembl chr12:20,327,679...20,337,144 		JBrowse link
G Gria1 glutamate ionotropic receptor AMPA type subunit 1 located_in IDA
IEA 		PMID:11100149
MMO:0000538
GO_REF:0000117 		UniProt
RGD		 PMID:12077196 PMID:11100149 PMID:19160501 GO_REF:0000117, RGD:1600985, RGD:8554168, RGD:152998909 NCBI chr10:41,710,540...42,030,105
Ensembl chr10:41,711,080...42,030,309 		JBrowse link
G Gria2 glutamate ionotropic receptor AMPA type subunit 2 located_in IDA
IEA 		PMID:11100149
PMID:10414981
MMO:0000538
MMO:0000686
GO_REF:0000117
MMO:0000662 		UniProt
RGD		 PMID:12077196 PMID:11100149 PMID:10414981 PMID:11007883 PMID:11978826 More... GO_REF:0000117, RGD:1600985, RGD:8554168, RGD:632958, RGD:5688258, RGD:625696, RGD:152995269, RGD:152998909, RGD:632958, RGD:616572804 NCBI chr 2:168,247,490...168,367,616
Ensembl chr 2:168,247,496...168,367,616 		JBrowse link
G Gria3 glutamate ionotropic receptor AMPA type subunit 3 located_in IDA
IEA 		GO_REF:0000117 UniProt
RGD		 PMID:12077196 GO_REF:0000117, RGD:1600985 NCBI chr  X:125,103,975...125,369,690
Ensembl chr  X:125,103,782...125,369,679 		JBrowse link
G Grip1 glutamate receptor interacting protein 1 IDA MMO:0000686 RGD PMID:17626212 RGD:152995392 NCBI chr 7:56,820,501...57,477,877
Ensembl chr 7:56,820,704...57,468,417 		JBrowse link
G Grip2 glutamate receptor interacting protein 2 located_in IDA PMID:10414981 UniProt PMID:10414981 RGD:632958 NCBI chr 4:125,828,609...125,913,693
Ensembl chr 4:125,828,609...125,913,750 		JBrowse link
G Grk2 G protein-coupled receptor kinase 2 IDA MMO:0000538 ex vivo light microscopy with immunohistochemistry RGD PMID:1403099 RGD:632163 NCBI chr 1:211,010,259...211,031,013
Ensembl chr 1:211,009,978...211,031,015 		JBrowse link
G Grk3 G protein-coupled receptor kinase 3 IDA MMO:0000538 ex vivo light microscopy with immunohistochemistry RGD PMID:1403099 RGD:632163 NCBI chr12:49,285,228...49,395,803
Ensembl chr12:49,285,263...49,395,802 		JBrowse link
G Grm4 glutamate metabotropic receptor 4 located_in IDA PMID:11906782 UniProt PMID:11906782 RGD:8554275 NCBI chr20:5,486,024...5,574,668
Ensembl chr20:5,482,977...5,574,668 		JBrowse link
G Grm5 glutamate metabotropic receptor 5 IDA RGD PMID:18582438 RGD:2303068 NCBI chr 1:150,722,711...151,297,585
Ensembl chr 1:150,733,678...151,296,649 		JBrowse link
G Grm7 glutamate metabotropic receptor 7 IDA RGD PMID:12823458 RGD:2289008 NCBI chr 4:145,286,714...146,169,099
Ensembl chr 4:145,286,924...146,169,201 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta located_in ISO (PMID:12805290) RGD PMID:12805290 NCBI chr11:76,004,502...76,154,665
Ensembl chr11:76,009,507...76,153,249 		JBrowse link
G Hcn1 hyperpolarization-activated cyclic nucleotide-gated potassium channel 1 IDA RGD PMID:17439493 RGD:2316636 NCBI chr 2:51,228,710...51,632,806
Ensembl chr 2:51,228,710...51,632,806 		JBrowse link
G Hcn2 hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2 IDA RGD PMID:17439493 RGD:2316636 NCBI chr 7:10,620,422...10,639,457
Ensembl chr 7:10,620,422...10,639,457 		JBrowse link
G Homer1 homer scaffold protein 1 IDA RGD PMID:9069287 RGD:633021 NCBI chr 2:26,279,012...26,388,279
Ensembl chr 2:26,278,105...26,381,657 		JBrowse link
G Hspa5 heat shock protein family A (Hsp70) member 5 IDA MMO:0000686 RGD PMID:26088419 RGD:11096590 NCBI chr 3:38,453,016...38,457,475
Ensembl chr 3:38,453,041...38,458,790 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 IDA RGD PMID:11230095 RGD:10059401 NCBI chr 8:50,080,514...50,084,376
Ensembl chr 8:50,080,199...50,084,372 		JBrowse link
G Htr2a 5-hydroxytryptamine receptor 2A IDA RGD PMID:18622042 RGD:2303638 NCBI chr15:56,360,647...56,428,703
Ensembl chr15:56,359,596...56,431,619 		JBrowse link
G Ilk integrin-linked kinase IDA localized to the ends of axons but not dendrites in polarized neurons RGD PMID:17490631 RGD:2301744 NCBI chr 1:169,500,716...169,506,972
Ensembl chr 1:169,498,681...169,506,964 		JBrowse link
G Inpp5j inositol polyphosphate-5-phosphatase J located_in IEA
ISO 		GO_REF:0000107
(PMID:16280363) 		Ensembl
RGD		 PMID:16280363 GO_REF:0000107 NCBI chr14:82,597,789...82,608,930
Ensembl chr14:82,597,790...82,609,678 		JBrowse link
G Jph4 junctophilin 4 located_in ISO (PMID:17347645) RGD PMID:17347645 NCBI chr15:32,549,536...32,558,859
Ensembl chr15:32,549,555...32,558,859 		JBrowse link
G Kcna4 potassium voltage-gated channel subfamily A member 4 located_in IDA PMID:14615029 SynGO-UCL PMID:14615029 RGD:12907553 NCBI chr 3:114,211,091...114,218,545
Ensembl chr 3:114,210,998...114,344,932 		JBrowse link
G Kirrel1 kirre like nephrin family adhesion molecule 1 located_in ISO
IEA 		(PMID:16874800)
GO_REF:0000107 		RGD
Ensembl		 PMID:16874800 GO_REF:0000107 NCBI chr 2:174,819,564...174,912,998
Ensembl chr 2:174,819,572...174,912,960 		JBrowse link
G Kirrel3 kirre like nephrin family adhesion molecule 3 located_in ISO
IEA 		(PMID:16874800)
GO_REF:0000107 		RGD
Ensembl		 PMID:16874800 GO_REF:0000107 NCBI chr 8:41,123,692...41,663,528
Ensembl chr 8:41,123,878...41,664,147 		JBrowse link
G Lpar1 lysophosphatidic acid receptor 1 IDA RGD PMID:16638019 RGD:2317707 NCBI chr 5:78,024,139...78,147,071
Ensembl chr 5:78,024,139...78,142,188 		JBrowse link
G Lzts1 leucine zipper tumor suppressor 1 IDA RGD PMID:12415013 RGD:1299532 NCBI chr16:25,309,502...25,364,942
Ensembl chr16:25,309,507...25,364,940 		JBrowse link
G Map1a microtubule-associated protein 1A located_in IDA PMID:2509111 ARUK-UCL PMID:2509111 RGD:13514077 NCBI chr 3:128,716,907...128,736,638
Ensembl chr 3:128,716,940...128,740,159 		JBrowse link
G Map2 microtubule-associated protein 2 located_in IDA
ISO 		PMID:3835499
MMO:0000538
(PMID:15996550) 		RGD PMID:15996550 PMID:3835499 PMID:23121659 RGD:13514083, RGD:12792285 NCBI chr 9:75,173,038...75,431,606
Ensembl chr 9:75,288,262...75,428,459 		JBrowse link
G Mpp2 MAGUK p55 scaffold protein 2 located_in ISO (PMID:26880549) RGD PMID:26880549 NCBI chr10:87,511,638...87,544,710
Ensembl chr10:87,511,638...87,544,029 		JBrowse link
G Negr1 neuronal growth regulator 1 IDA MMO:0000686 RGD PMID:12617969 RGD:405650376 NCBI chr 2:248,283,164...249,015,538
Ensembl chr 2:248,283,353...249,018,410 		JBrowse link
G Nlgn1 neuroligin 1 IDA RGD PMID:22539981 RGD:9831126 NCBI chr 2:110,184,987...111,110,316
Ensembl chr 2:110,186,573...110,909,984 		JBrowse link
G Nlgn2 neuroligin 2 IDA RGD PMID:22539981 RGD:9831126 NCBI chr10:55,042,175...55,056,578
Ensembl chr10:55,043,185...55,056,578 		JBrowse link
G Nsf N-ethylmaleimide sensitive factor, vesicle fusing ATPase located_in IDA PMID:1041498
MMO:0000663 		UniProt
RGD		 PMID:1041498 PMID:9697855 RGD:8553508, RGD:616572804 NCBI chr10:89,227,937...89,357,383
Ensembl chr10:89,227,937...89,367,621 		JBrowse link
G Ntsr1 neurotensin receptor 1 IDA RGD PMID:9763490 RGD:9831116 NCBI chr 3:187,983,778...188,033,934
Ensembl chr 3:187,983,778...188,033,934 		JBrowse link
G Ntsr2 neurotensin receptor 2 IDA RGD PMID:16564027 RGD:9743898 NCBI chr 6:45,153,095...45,159,783
Ensembl chr 6:45,153,095...45,159,783 		JBrowse link
G Prex1 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 IDA RGD PMID:18697831 RGD:2314615 NCBI chr 3:175,724,939...175,875,764
Ensembl chr 3:175,726,012...175,875,764 		JBrowse link
G Prkar2b protein kinase cAMP-dependent type II regulatory subunit beta located_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:24464040)
GO_REF:0000107 		ParkinsonsUK-UCL
RGD
Ensembl		 PMID:24464040 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:54,291,143...54,381,639
Ensembl chr 6:54,291,151...54,381,411 		JBrowse link
G Psen1 presenilin 1 located_in ISO
IEA 		(PMID:12805290)
GO_REF:0000107 		RGD
Ensembl		 PMID:12805290 GO_REF:0000107 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:109,060,352...109,106,189 		JBrowse link
G Rgs19 regulator of G-protein signaling 19 located_in ISO (PMID:16819522) RGD PMID:16819522 NCBI chr 3:189,182,041...189,190,494
Ensembl chr 3:189,182,383...189,190,736 		JBrowse link
G Rgs7bp regulator of G-protein signaling 7 binding protein IDA RGD PMID:18248908 RGD:13524856 NCBI chr 2:37,867,698...37,965,587
Ensembl chr 2:37,872,949...37,965,253 		JBrowse link
G Rtn4r reticulon 4 receptor located_in ISS
ISO 		GO_REF:0000024
(PMID:22325200) 		UniProt
RGD		 PMID:22325200 GO_REF:0000024 NCBI chr11:96,348,613...96,373,554
Ensembl chr11:96,348,502...96,373,554 		JBrowse link
G Sez6 seizure related 6 homolog is_active_in
located_in 		IBA
ISO
IEA 		GO_REF:0000033
(PMID:18031681)
GO_REF:0000107 		GO_Central
RGD
Ensembl		 PMID:18031681 GO_REF:0000033 GO_REF:0000107 NCBI chr10:63,317,065...63,366,733
Ensembl chr10:63,316,953...63,366,723 		JBrowse link
G Slc1a1 solute carrier family 1 member 1 located_in IDA PMID:10701825 ARUK-UCL PMID:10701825 RGD:21201260 NCBI chr 1:235,963,455...236,043,572
Ensembl chr 1:235,963,437...236,045,469 		JBrowse link
G Slc1a2 solute carrier family 1 member 2 IDA RGD PMID:11896154 RGD:619547 NCBI chr 3:109,460,109...109,590,445
Ensembl chr 3:109,459,630...109,605,249 		JBrowse link
G Slc8a1 solute carrier family 8 member A1 IDA RGD PMID:17215351 RGD:7175092 NCBI chr 6:18,975,498...19,299,704
Ensembl chr 6:18,946,798...19,287,964 		JBrowse link
G Stau2 staufen double-stranded RNA binding protein 2 IDA RGD PMID:16418534 RGD:10043163 NCBI chr 5:7,623,528...7,868,206
Ensembl chr 5:7,624,019...7,868,204 		JBrowse link
G Syndig1 synapse differentiation inducing 1 located_in IDA PMID:20152115 UniProt PMID:20152115 RGD:8554654 NCBI chr 3:158,491,474...158,695,174
Ensembl chr 3:158,491,996...158,658,652 		JBrowse link
G Syngap1 synaptic Ras GTPase activating protein 1 located_in ISO (PMID:16452659) RGD PMID:16452659 NCBI chr20:5,028,226...5,058,519
Ensembl chr20:5,026,707...5,057,751 		JBrowse link
G Whrn whirlin IDA RGD PMID:12641734 RGD:632479 NCBI chr 5:81,843,820...81,933,400
Ensembl chr 5:81,843,820...81,927,381 		JBrowse link
G Zfp804a zinc finger protein 804A located_in ISO
IDA
IEA 		(PMID:27837918)
GO_REF:0000107 		RGD
Ensembl		 PMID:27837918 PMID:27837918 GO_REF:0000107, RGD:13210564 NCBI chr 3:87,440,496...87,670,872
Ensembl chr 3:87,197,582...87,670,869 		JBrowse link
G Zmynd8 zinc finger, MYND-type containing 8 IDA RGD PMID:24117785 RGD:8554267 NCBI chr 3:174,948,162...175,061,382
Ensembl chr 3:174,948,537...175,061,571 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21544
    cellular anatomical structure 21390
      dendritic shaft 75
Path 2
Term Annotations click to browse term
  cellular_component 21544
    cellular anatomical structure 21390
      cell projection 2891
        plasma membrane bounded cell projection 2784
          neuron projection 1656
            dendritic tree 859
              dendrite 857
                dendritic shaft 75
paths to the root