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ONTOLOGY REPORT - ANNOTATIONS

Term:retinoic acid metabolic process
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Accession:GO:0042573 term browser browse the term
Definition:The chemical reactions and pathways involving retinoic acid, one of the three components that makes up vitamin A.
Synonyms:exact_synonym: retinoic acid metabolism;   vitamin A1 acid metabolic process;   vitamin A1 acid metabolism


show annotations for term's descendants           Sort by:
retinoic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adh1-ps1 alcohol dehydrogenase 1C (class I), gamma polypeptide, pseudogene 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:226,862,836...226,881,171
Ensembl chr 2:226,862,725...226,881,162 		JBrowse link
G Adh1c alcohol dehydrogenase 1C (class I), gamma polypeptide involved_in
acts_upstream_of_or_within		 IBA
ISO
IEA		 GO_REF:0000033
MGI:2180099|MGI:2180100|MGI:97876 (PMID:10358022), (PMID:12851412), (PMID:15193143)
GO_REF:0000107		 GO_Central
RGD
Ensembl		 PMID:10358022 PMID:12851412 PMID:15193143 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:229,470,703...229,482,291
Ensembl chr 2:226,797,303...226,808,892 		JBrowse link
G Adh6 alcohol dehydrogenase 6 (class V) involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:229,576,612...229,608,359
Ensembl chr 2:226,903,250...226,934,534 		JBrowse link
G Adh6a alcohol dehydrogenase 6A (class V) involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:226,823,775...226,846,005
Ensembl chr 2:226,823,730...226,846,003 		JBrowse link
G Adh7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:2180102 (PMID:10358022), (PMID:10402668)		 GO_Central
Ensembl
RGD		 PMID:10358022 PMID:10402668 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:226,748,724...226,763,183
Ensembl chr 2:226,741,788...226,763,182 		JBrowse link
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 acts_upstream_of_or_within ISO
IEA		 MGI:1861722|MGI:2667220|MGI:3609477 (PMID:10191271), (PMID:12808103), (PMID:12851412), (PMID:16207763)
GO_REF:0000107		 RGD
Ensembl		 PMID:10191271 PMID:12808103 PMID:12851412 PMID:16207763 GO_REF:0000107 NCBI chr 1:227,426,939...227,579,497
Ensembl chr 1:218,042,127...218,152,961 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 involved_in
acts_upstream_of_or_within		 TAS
IEA
ISO
IDA		 GO_REF:0000107
MGI:1857891|MGI:2180721 (PMID:14623241), (PMID:16368932), (PMID:8797830)
(PMID:33565183)		 Ensembl
RGD		 PMID:8797830 PMID:14623241 PMID:16368932 PMID:33565183 PMID:15205379 More... GO_REF:0000107, RGD:1576366, RGD:1576367 NCBI chr 8:80,758,641...80,837,891
Ensembl chr 8:71,877,850...71,957,107 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:11585737)
GO_REF:0000107
MGI:1353450|MGI:3043947|MGI:3512079 (PMID:16207763), (PMID:17207476)		 RGD
Ensembl		 PMID:11585737 PMID:16207763 PMID:17207476 GO_REF:0000107 NCBI chr 1:129,392,516...129,436,552
Ensembl chr 1:119,982,277...120,017,436 		JBrowse link
G Aldh8a1 aldehyde dehydrogenase 8 family, member A1 involved_in ISO
IBA		 (PMID:11007799)
GO_REF:0000033		 RGD
GO_Central		 PMID:11007799 GO_REF:0000033 NCBI chr 1:18,003,507...18,022,952
Ensembl chr 1:16,183,940...16,203,385 		JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 acts_upstream_of_or_within NAS
ISO		 (PMID:9826179) RGD PMID:9826179 PMID:7750498 RGD:61557 NCBI chr 2:175,714,862...175,719,208
Ensembl chr 2:173,416,857...173,421,379 		JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:22020119), (PMID:9716180)
GO_REF:0000107
(PMID:9250660), (PMID:9442090)
MGI:2183292 (PMID:15531370)		 RGD
Ensembl		 PMID:9250660 PMID:9442090 PMID:9716180 PMID:15531370 PMID:22020119 GO_REF:0000107 NCBI chr 1:244,883,822...244,887,657
Ensembl chr 1:235,471,298...235,475,204 		JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:22020119)		 UniProt
Ensembl
RGD		 PMID:22020119 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:118,599,356...118,616,176
Ensembl chr 4:117,041,808...117,058,628 		JBrowse link
G Cyp2c11 cytochrome P450, subfamily 2, polypeptide 11 involved_in ISO (PMID:11093772) RGD PMID:11093772 NCBI chr 1:246,175,216...246,211,445
Ensembl chr 1:236,762,842...236,799,066 		JBrowse link
G Cyp2c79 cytochrome P450, family 2, subfamily c, polypeptide 79 involved_in ISO (PMID:11093772) RGD PMID:11093772
G Cyp2s1 cytochrome P450, family 2, subfamily s, polypeptide 1 involved_in ISO
IEA		 (PMID:12711469)
GO_REF:0000107		 RGD
Ensembl		 PMID:12711469 GO_REF:0000107 NCBI chr 1:81,309,948...81,325,303
Ensembl chr 1:81,310,451...81,325,303 		JBrowse link
G Cyp3a2 cytochrome P450, family 3, subfamily a, polypeptide 2 involved_in ISO (PMID:11093772) RGD PMID:11093772 NCBI chr12:14,321,771...14,343,886
Ensembl chr12:9,015,383...9,285,008 		JBrowse link
G Cyp3a9 cytochrome P450, family 3, subfamily a, polypeptide 9 involved_in ISO (PMID:11093772) RGD PMID:11093772 NCBI chr12:21,919,955...21,960,160
Ensembl chr12:16,806,207...16,846,422 		JBrowse link
G Dhrs9 dehydrogenase/reductase 9 NAS RGD PMID:12390888 RGD:633755 NCBI chr 3:74,553,357...74,579,535
Ensembl chr 3:54,147,803...54,220,241 		JBrowse link
G Rbp1 retinol binding protein 1 acts_upstream_of_or_within ISO MGI:2181412|MGI:87921 (PMID:15193143) RGD PMID:15193143 NCBI chr 8:107,904,589...107,926,109
Ensembl chr 8:99,025,206...99,046,743 		JBrowse link
G Rdh16 retinol dehydrogenase 16 IDA RGD PMID:7499345 RGD:1299624 NCBI chr 7:65,499,763...65,510,304
Ensembl chr 7:63,597,536...63,624,124 		JBrowse link
G Scpep1 serine carboxypeptidase 1 IEP RGD PMID:11447226 RGD:70518 NCBI chr10:74,200,491...74,230,107
Ensembl chr10:73,703,278...73,732,850 		JBrowse link
9-cis-retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 acts_upstream_of_or_within ISO
IEA		 (PMID:11876656)
GO_REF:0000107		 RGD
Ensembl		 PMID:11876656 GO_REF:0000107 NCBI chr 1:227,426,939...227,579,497
Ensembl chr 1:218,042,127...218,152,961 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO
IEA		 (PMID:11876656)
GO_REF:0000107		 RGD
Ensembl		 PMID:11876656 GO_REF:0000107 NCBI chr 8:80,758,641...80,837,891
Ensembl chr 8:71,877,850...71,957,107 		JBrowse link
G Aldh8a1 aldehyde dehydrogenase 8 family, member A1 acts_upstream_of_or_within ISO
IEA		 (PMID:11876656)
GO_REF:0000107		 RGD
Ensembl		 PMID:11876656 GO_REF:0000107 NCBI chr 1:18,003,507...18,022,952
Ensembl chr 1:16,183,940...16,203,385 		JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 IDA 9-cis- and all-trans-retinoic acid synthesized from 9-cis- and all-trans-retinal RGD PMID:8765131 RGD:2306683 NCBI chr 8:66,991,940...66,998,014
Ensembl chr 8:58,096,077...58,102,125 		JBrowse link
G Dhrs9 dehydrogenase/reductase 9 involved_in ISO
IEA
ISS		 (PMID:11304534)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:11304534 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:74,553,357...74,579,535
Ensembl chr 3:54,147,803...54,220,241 		JBrowse link
G Rdh9 retinol dehydrogenase 9 acts_upstream_of_or_within ISO (PMID:11876656) RGD PMID:11876656 NCBI chr 7:63,642,305...63,645,149 JBrowse link
9-cis-retinoic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 IDA RGD PMID:17167544 RGD:2306320 NCBI chr 1:227,426,939...227,579,497
Ensembl chr 1:218,042,127...218,152,961 		JBrowse link
negative regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1c3 aldo-keto reductase family 1, member C3 involved_in ISO (PMID:21851338) RGD PMID:21851338 NCBI chr17:71,020,884...71,037,779
Ensembl chr17:66,110,963...66,127,873 		JBrowse link
G Prmt3 protein arginine methyltransferase 3 involved_in ISO
ISS		 (PMID:33495566)
GO_REF:0000024		 RGD
UniProt		 PMID:33495566 GO_REF:0000024 NCBI chr 1:108,628,899...108,718,803
Ensembl chr 1:99,492,724...99,579,435 		JBrowse link
positive regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rdh10 retinol dehydrogenase 10 IMP RGD PMID:21138835 RGD:6771354 NCBI chr 5:7,969,931...7,998,834
Ensembl chr 5:3,188,445...3,215,572 		JBrowse link
G Rdh16 retinol dehydrogenase 16 IMP RGD PMID:21138835 RGD:6771354 NCBI chr 7:65,499,763...65,510,304
Ensembl chr 7:63,597,536...63,624,124 		JBrowse link
retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 IMP RGD PMID:21138835 RGD:6771354 NCBI chr 1:227,426,939...227,579,497
Ensembl chr 1:218,042,127...218,152,961 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 involved_in IEP
IEA
ISO
ISS
IMP		 GO_REF:0000107
(PMID:29240402), (PMID:33565183)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:29240402 PMID:33565183 PMID:15950969 PMID:21138835 GO_REF:0000024 GO_REF:0000107, RGD:6771322, RGD:6771354 NCBI chr 8:80,758,641...80,837,891
Ensembl chr 8:71,877,850...71,957,107 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 acts_upstream_of_or_within
involved_in		 IEP
IEA
ISO
ISS
IMP		 GO_REF:0000107
(PMID:14623956)
(PMID:11013254), (PMID:11044606), (PMID:16241904)
(PMID:27759097)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:11013254 PMID:11044606 PMID:14623956 PMID:16241904 PMID:27759097 More... GO_REF:0000024 GO_REF:0000107, RGD:6771322, RGD:6771354 NCBI chr 1:129,392,516...129,436,552
Ensembl chr 1:119,982,277...120,017,436 		JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 IEP RGD PMID:15950969 RGD:6771322 NCBI chr 2:175,714,862...175,719,208
Ensembl chr 2:173,416,857...173,421,379 		JBrowse link
G Dhrs9 dehydrogenase/reductase 9 IEP
IDA		 RGD PMID:15950969 PMID:21138835 RGD:6771322, RGD:6771354 NCBI chr 3:74,553,357...74,579,535
Ensembl chr 3:54,147,803...54,220,241 		JBrowse link
G Rbp1 retinol binding protein 1 involved_in IEP
IEA		 GO_REF:0000002 InterPro
RGD		 PMID:15950969 GO_REF:0000002, RGD:6771322 NCBI chr 8:107,904,589...107,926,109
Ensembl chr 8:99,025,206...99,046,743 		JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO
IEA		 (PMID:17473173)
GO_REF:0000107		 RGD
Ensembl		 PMID:17473173 GO_REF:0000107 NCBI chr 5:7,969,931...7,998,834
Ensembl chr 5:3,188,445...3,215,572 		JBrowse link
retinoic acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 involved_in ISO
IEA
IBA		 (PMID:10823918)
GO_REF:0000107
GO_REF:0000117
GO_REF:0000033
(PMID:9250660)		 RGD
Ensembl
UniProt
GO_Central		 PMID:9250660 PMID:10823918 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr 1:244,883,822...244,887,657
Ensembl chr 1:235,471,298...235,475,204 		JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 involved_in IMP
IEA
IBA
ISO		 GO_REF:0000107
GO_REF:0000033
GO_REF:0000117
(PMID:10823918)		 Ensembl
GO_Central
UniProt
RGD		 PMID:10823918 PMID:21138835 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117, RGD:6771354 NCBI chr 4:118,599,356...118,616,176
Ensembl chr 4:117,041,808...117,058,628 		JBrowse link
G Cyp26c1 cytochrome P450, family 26, subfamily C, polypeptide 1 involved_in ISO
IEA
IBA		 (PMID:14532297)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:14532297 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:244,870,412...244,881,610
Ensembl chr 1:235,459,356...235,466,842 		JBrowse link
G Cyp2w1 cytochrome P450, family 2, subfamily w, polypeptide 1 involved_in ISO
IEA		 (PMID:26936974)
GO_REF:0000107		 RGD
Ensembl		 PMID:26936974 GO_REF:0000107 NCBI chr12:20,405,400...20,410,282
Ensembl chr12:15,291,704...15,296,421 		JBrowse link
G Klf9 KLF transcription factor 9 acts_upstream_of_or_within ISO (PMID:9250660) RGD PMID:9250660 NCBI chr 1:230,126,646...230,151,641
Ensembl chr 1:220,700,108...220,725,037 		JBrowse link
G Sp1 Sp1 transcription factor acts_upstream_of_or_within ISO (PMID:9250660) RGD PMID:9250660 NCBI chr 7:135,419,864...135,450,513
Ensembl chr 7:133,541,491...133,571,961 		JBrowse link
G Strap serine/threonine kinase receptor associated protein acts_upstream_of_or_within ISO (PMID:9250660) RGD PMID:9250660 NCBI chr 4:170,646,042...170,660,291
Ensembl chr 4:170,646,001...170,660,828 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20567
    cellular process 19557
      metabolic process 12206
        hormone metabolic process 268
          retinoic acid metabolic process 31
            9-cis-retinoic acid metabolic process + 6
            retinoic acid biosynthetic process + 13
            retinoic acid catabolic process 7
            retinoic acid metabolic process in spinal cord anterior-posterior patterning 0
Path 2
Term Annotations click to browse term
  biological_process 20567
    cellular process 19557
      metabolic process 12206
        primary metabolic process 10763
          lipid metabolic process 1485
            isoprenoid metabolic process 143
              terpenoid metabolic process 107
                diterpenoid metabolic process 95
                  retinoid metabolic process 87
                    retinoic acid metabolic process 31
                      9-cis-retinoic acid metabolic process + 6
                      retinoic acid biosynthetic process + 13
                      retinoic acid catabolic process 7
                      retinoic acid metabolic process in spinal cord anterior-posterior patterning 0
paths to the root