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ONTOLOGY REPORT - ANNOTATIONS


Term:indole-containing compound biosynthetic process
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Accession:GO:0042435 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of compounds that contain an indole (2,3-benzopyrrole) skeleton.
Synonyms:exact_synonym: indole derivative biosynthesis;   indole derivative biosynthetic process;   indole-containing compound anabolism;   indole-containing compound biosynthesis;   indole-containing compound formation;   indole-containing compound synthesis



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melatonin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aanat aralkylamine N-acetyltransferase involved_in TAS
IBA
IEA
ISO
ISS
GO_REF:0000033
GO_REF:0000041
(PMID:11313340)
GO_REF:0000024
GO_Central
UniProt
RGD
PMID:11313340 PMID:9054387 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041, RGD:67926 NCBI chr10:101,827,072...101,831,805
Ensembl chr10:101,827,301...101,831,801
JBrowse link
G Asmt acetylserotonin O-methyltransferase acts_upstream_of_or_within
involved_in
IDA
ISO
IBA
IEA
(PMID:20308563), (PMID:3941912)
GO_REF:0000033
(PMID:22775292)
GO_REF:0000041
RGD
GO_Central
UniProt
PMID:3941912 PMID:20308563 PMID:22775292 PMID:8930356 PMID:12198599 GO_REF:0000033 GO_REF:0000041, RGD:1299464, RGD:1359073 NCBI chr12:16,304,719...16,309,568
Ensembl chr12:16,304,719...16,309,568
JBrowse link
regulation of serotonin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh2 aldehyde dehydrogenase 2 family member involved_in ISS
ISO
GO_REF:0000024
(PMID:26711020)
UniProt
RGD
PMID:26711020 GO_REF:0000024 NCBI chr12:34,949,549...34,982,527
Ensembl chr12:34,901,219...34,982,521
JBrowse link
serotonin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddc dopa decarboxylase involved_in IDA
IBA
GO_REF:0000033 GO_Central
RGD
PMID:10027744 GO_REF:0000033, RGD:5129182 NCBI chr14:86,378,685...86,469,189
Ensembl chr14:86,378,685...86,469,208
JBrowse link
G Tph1 tryptophan hydroxylase 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:14697203)
UniProt
RGD
PMID:14697203 GO_REF:0000024 NCBI chr 1:97,157,375...97,178,415
Ensembl chr 1:97,157,409...97,178,344
JBrowse link
G Tph2 tryptophan hydroxylase 2 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 7:50,685,694...50,789,424
Ensembl chr 7:50,685,694...50,789,424
JBrowse link
serotonin biosynthetic process from tryptophan term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp2d4 cytochrome P450, family 2, subfamily d, polypeptide 4 IDA RGD PMID:23098818 RGD:11353778 NCBI chr 7:115,762,662...115,771,832
Ensembl chr 7:113,881,618...113,891,759
JBrowse link
G Tph1 tryptophan hydroxylase 1 TAS RGD PMID:12153488 RGD:625621 NCBI chr 1:97,157,375...97,178,415
Ensembl chr 1:97,157,409...97,178,344
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    cellular process 19525
      metabolic process 12160
        indole-containing compound metabolic process 28
          indole-containing compound biosynthetic process 7
            brevianamide F biosynthetic process 0
            indolalkylamine biosynthetic process + 0
            indole biosynthetic process 0
            indole glucosinolate biosynthetic process 0
            indole phytoalexin biosynthetic process + 0
            indoleacetic acid biosynthetic process + 0
            indoleacetic acid conjugate biosynthetic process + 0
            melatonin biosynthetic process 2
            psilocybin biosynthetic process 0
            serotonin biosynthetic process + 5
            tryprostatin A biosynthetic process 0
paths to the root