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ONTOLOGY REPORT - ANNOTATIONS


Term:modified amino acid biosynthetic process
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Accession:GO:0042398 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of compounds derived from amino acids, organic acids containing one or more amino substituents.
Synonyms:exact_synonym: amino acid derivative biosynthetic process;   cellular amino acid derivative anabolism;   cellular amino acid derivative biosynthesis;   cellular amino acid derivative biosynthetic process;   cellular amino acid derivative formation;   cellular amino acid derivative synthesis;   cellular modified amino acid anabolism;   cellular modified amino acid biosynthesis;   cellular modified amino acid formation;   cellular modified amino acid synthesis



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10-formyltetrahydrofolate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in ISO
IEA
(PMID:1881876)
(PMID:23704330)
GO_REF:0000107
RGD
Ensembl
PMID:1881876 PMID:23704330 GO_REF:0000107 NCBI chr 6:100,713,510...100,781,013
Ensembl chr 6:94,977,862...95,045,372
JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like involved_in ISO
IBA
(PMID:12937168)
GO_REF:0000033
RGD
GO_Central
PMID:12937168 GO_REF:0000033 NCBI chr 1:40,443,926...40,632,911
Ensembl chr 1:40,444,008...40,632,905
JBrowse link
carnitine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadm acyl-CoA dehydrogenase medium chain involved_in ISO
IEA
(PMID:16972171)
GO_REF:0000107
RGD
Ensembl
PMID:16972171 GO_REF:0000107 NCBI chr 2:242,858,865...242,883,036
Ensembl chr 2:242,858,865...242,883,147
JBrowse link
G Aldh9a1 aldehyde dehydrogenase 9 family, member A1 involved_in TAS
ISO
IEA
(PMID:10702312)
GO_REF:0000107
GO_REF:0000041
RGD
Ensembl
UniProt
PMID:10702312 PMID:10702312 GO_REF:0000041 GO_REF:0000107, RGD:68317 NCBI chr13:79,505,738...79,522,539
Ensembl chr13:79,505,695...79,540,568
JBrowse link
G Bbox1 gamma-butyrobetaine hydroxylase 1 involved_in TAS
IBA
ISO
ISS
IEA
GO_REF:0000033
MGI:104740 (PMID:17692817), (PMID:18945875)
PMID:9753662
GO_REF:0000024
(PMID:20599753), (PMID:9753662)
GO_REF:0000041
GO_Central
RGD
UniProt
PMID:9753662 PMID:17692817 PMID:18945875 PMID:20599753 PMID:10526231 More... GO_REF:0000024 GO_REF:0000033 GO_REF:0000041, RGD:632240, RGD:8554503 NCBI chr 3:96,822,654...96,871,786
Ensembl chr 3:96,822,655...96,871,458
JBrowse link
G Tmlhe trimethyllysine hydroxylase, epsilon involved_in
acts_upstream_of_or_within
TAS
IBA
ISO
ISS
IEA
GO_REF:0000033
(PMID:12121276)
(PMID:37553674)
GO_REF:0000024
GO_REF:0000041
(PMID:15754339)
(PMID:23092983)
GO_Central
RGD
UniProt
PMID:12121276 PMID:15754339 PMID:23092983 PMID:37553674 PMID:11431483 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041, RGD:70558 NCBI chr20:91,234...138,942
Ensembl chr20:91,272...140,386
JBrowse link
creatine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gamt guanidinoacetate N-methyltransferase acts_upstream_of_or_within
involved_in
IDA
ISO
IBA
IEA
TAS
MGI:3044282 (PMID:15028668)
GO_REF:0000033
(PMID:8651275)
GO_REF:0000041
RGD
GO_Central
UniProt
PMID:8651275 PMID:15028668 PMID:15533043 PMID:12079381 GO_REF:0000033 GO_REF:0000041, RGD:1359081, RGD:632754 NCBI chr 7:9,448,590...9,451,413
Ensembl chr 7:9,448,628...9,451,778
JBrowse link
G Gatm glycine amidinotransferase acts_upstream_of_or_within
involved_in
ISO
IBA
IEA
(PMID:9218780)
GO_REF:0000033
GO_REF:0000041
RGD
GO_Central
UniProt
PMID:9218780 GO_REF:0000033 GO_REF:0000041 NCBI chr 3:109,658,919...109,675,508
Ensembl chr 3:109,658,951...109,684,129
JBrowse link
glutathione biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gclc glutamate-cysteine ligase, catalytic subunit acts_upstream_of_or_within
involved_in
IMP
ISO
IBA
IEA
ISS
MGI:2387010 (PMID:10805773), (PMID:16081425)
GO_REF:0000033
GO_REF:0000041
(PMID:10395918), (PMID:12663448), (PMID:8104187), (PMID:9675072)
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:8104187 PMID:9675072 PMID:10395918 PMID:10805773 PMID:12663448 More... GO_REF:0000024 GO_REF:0000033 GO_REF:0000041, RGD:1582661 NCBI chr 8:87,510,251...87,548,896
Ensembl chr 8:78,630,127...78,668,544
JBrowse link
G Gclm glutamate cysteine ligase, modifier subunit acts_upstream_of_or_within
involved_in
IMP
ISO
IBA
IEA
ISS
(PMID:16081425)
GO_REF:0000033
GO_REF:0000041
(PMID:10395918), (PMID:12081989), (PMID:9675072)
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:9675072 PMID:10395918 PMID:12081989 PMID:16081425 PMID:16183645 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041, RGD:1582661 NCBI chr 2:213,032,135...213,052,192
Ensembl chr 2:210,347,482...210,367,535
JBrowse link
G Ggt1 gamma-glutamyltransferase 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:12468440)
Ensembl
RGD
PMID:12468440 GO_REF:0000107 NCBI chr20:13,074,695...13,104,095
Ensembl chr20:13,074,700...13,108,442
JBrowse link
G Ggt5 gamma-glutamyltransferase 5 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr20:13,043,255...13,071,523
Ensembl chr20:13,043,257...13,071,450
JBrowse link
G Ggt6 gamma-glutamyl transferase 6 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:57,051,977...57,054,900
Ensembl chr10:57,051,825...57,067,260
JBrowse link
G Ggt7 gamma-glutamyltransferase 7 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:143,978,073...144,004,597
Ensembl chr 3:143,978,082...144,001,492
JBrowse link
G Gss glutathione synthetase involved_in IDA
IEA
GO_REF:0000041 UniProt
RGD
PMID:10964706 GO_REF:0000041, RGD:1599340 NCBI chr 3:164,508,005...164,538,343
Ensembl chr 3:144,047,850...144,078,198
JBrowse link
G Hagh hydroxyacyl glutathione hydrolase involved_in IEA
ISO
GO_REF:0000107
(PMID:8550579)
Ensembl
RGD
PMID:8550579 GO_REF:0000107 NCBI chr10:13,874,883...13,889,527
Ensembl chr10:13,875,241...13,889,504
JBrowse link
G Mgst2 microsomal glutathione S-transferase 2 involved_in ISO (PMID:8703034) RGD PMID:8703034 NCBI chr 2:135,679,524...135,715,828
Ensembl chr 2:135,693,557...135,715,828
JBrowse link
G Slc1a1 solute carrier family 1 member 1 involved_in ISO (PMID:12614333) RGD PMID:12614333 NCBI chr 1:235,963,455...236,043,572
Ensembl chr 1:226,549,842...226,630,402
JBrowse link
G Slc1a2 solute carrier family 1 member 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:12614333)
Ensembl
RGD
PMID:12614333 GO_REF:0000107 NCBI chr 3:89,005,129...89,135,469
Ensembl chr 3:89,005,129...89,126,498
JBrowse link
glycine betaine biosynthetic process from choline term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh7a1 aldehyde dehydrogenase 7 family, member A1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr18:50,003,242...50,042,193
Ensembl chr18:50,009,934...50,042,193
JBrowse link
G Chdh choline dehydrogenase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr16:5,194,269...5,225,541
Ensembl chr16:5,194,269...5,225,537
JBrowse link
hydroxylysine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plod2 procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 involved_in ISO
IEA
(PMID:10934207)
GO_REF:0000107
RGD
Ensembl
PMID:10934207 GO_REF:0000107 NCBI chr 8:93,084,548...93,167,255
Ensembl chr 8:93,084,513...93,167,255
JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 involved_in IEA
ISO
GO_REF:0000107
(PMID:16447251)
Ensembl
RGD
PMID:16447251 GO_REF:0000107 NCBI chr12:19,676,384...19,686,945
Ensembl chr12:19,676,386...19,686,960
JBrowse link
phosphatidylserine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plscr1 phospholipid scramblase 1 involved_in ISO (PMID:12509439) RGD PMID:12509439 NCBI chr 8:92,784,279...92,804,698
Ensembl chr 8:92,784,356...92,804,692
JBrowse link
G Ptdss1 phosphatidylserine synthase 1 involved_in ISO
IEA
(PMID:19014349)
GO_REF:0000041
RGD
UniProt
PMID:19014349 GO_REF:0000041 NCBI chr 7:63,845,017...63,906,791
Ensembl chr 7:63,844,268...63,906,791
JBrowse link
G Ptdss2 phosphatidylserine synthase 2 involved_in
acts_upstream_of_or_within
ISO
IEA
(PMID:19014349)
MGI:2447151 (PMID:12361952)
GO_REF:0000041
RGD
UniProt
PMID:12361952 PMID:19014349 GO_REF:0000041 NCBI chr 1:196,241,439...196,267,632
Ensembl chr 1:196,241,494...196,267,685
JBrowse link
phosphocreatine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ckb creatine kinase B involved_in ISO
IEA
IBA
(PMID:8186255)
GO_REF:0000107
GO_REF:0000033
RGD
Ensembl
GO_Central
PMID:8186255 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:136,550,583...136,553,464
Ensembl chr 6:130,729,423...130,732,315
JBrowse link
G Ckm creatine kinase, M-type involved_in
acts_upstream_of_or_within
TAS
IDA
IEA
ISO
IBA
GO_REF:0000107
(PMID:15601660)
GO_REF:0000033
Ensembl
RGD
GO_Central
PMID:15601660 PMID:6209281 PMID:12069495 GO_REF:0000033 GO_REF:0000107, RGD:727227, RGD:1359082 NCBI chr 1:79,061,390...79,071,721
Ensembl chr 1:79,061,456...79,071,720
JBrowse link
G Ckmt1 creatine kinase, mitochondrial 1 involved_in IEA
IBA
GO_REF:0000002
GO_REF:0000033
InterPro
GO_Central
GO_REF:0000002 GO_REF:0000033 NCBI chr 3:128,783,408...128,789,485
Ensembl chr 3:108,330,705...108,335,758
JBrowse link
G Ckmt2 creatine kinase, mitochondrial 2 involved_in IEA
IBA
GO_REF:0000002
GO_REF:0000033
InterPro
GO_Central
GO_REF:0000002 GO_REF:0000033 NCBI chr 2:23,079,918...23,110,518
Ensembl chr 2:23,079,918...23,110,430
JBrowse link
positive regulation of glutathione biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 involved_in ISO (PMID:14978030) RGD PMID:14978030 NCBI chr 4:102,805,495...102,866,914
Ensembl chr 4:102,805,510...102,866,911
JBrowse link
G Nfe2l2 NFE2 like bZIP transcription factor 2 involved_in ISO (PMID:14978030) RGD PMID:14978030 NCBI chr 3:81,001,529...81,031,165
Ensembl chr 3:60,594,242...60,621,737
JBrowse link
positive regulation of L-dopa biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Park7 Parkinsonism associated deglycase acts_upstream_of ISS
ISO
GO_REF:0000024
(PMID:16731528)
ParkinsonsUK-UCL
RGD
PMID:16731528 GO_REF:0000024 NCBI chr 5:161,353,718...161,376,993
Ensembl chr 5:161,353,719...161,376,970
JBrowse link
regulation of glutathione biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc7a11 solute carrier family 7 member 11 acts_upstream_of_or_within ISO MGI:1857061 (PMID:16037214) RGD PMID:16037214 NCBI chr 2:134,382,002...134,517,622
Ensembl chr 2:133,963,107...134,517,536
JBrowse link
tetrahydrofolate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1l1 aldehyde dehydrogenase 1 family, member L1 TAS RGD PMID:14729668 RGD:1547843 NCBI chr 4:123,059,989...123,106,471
Ensembl chr 4:123,060,008...123,106,465
JBrowse link
G Atic 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase IDA RGD PMID:7057182 RGD:2301991 NCBI chr 9:73,164,846...73,184,897
Ensembl chr 9:73,164,846...73,184,889
JBrowse link
G Dhfr dihydrofolate reductase involved_in IDA
ISO
IEA
IBA
(PMID:2303423)
GO_REF:0000041
GO_REF:0000033
RGD
UniProt
GO_Central
PMID:2303423 PMID:11502523 GO_REF:0000033 GO_REF:0000041, RGD:1298877 NCBI chr 2:23,585,876...23,611,199
Ensembl chr 2:23,586,031...23,613,713
JBrowse link
G Gch1 GTP cyclohydrolase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:20,404,267...20,437,727
Ensembl chr15:20,402,527...20,437,698
JBrowse link
tetrahydrofolylpolyglutamate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fpgs folylpolyglutamate synthase involved_in IEA
IBA
ISO
GO_REF:0000041
GO_REF:0000033
(PMID:3619447), (PMID:8408020)
(PMID:25164808)
UniProt
GO_Central
RGD
PMID:3619447 PMID:8408020 PMID:25164808 GO_REF:0000033 GO_REF:0000041 NCBI chr 3:15,972,800...15,993,592
Ensembl chr 3:15,972,800...15,993,563
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    cellular process 19525
      metabolic process 12160
        biosynthetic process 8651
          modified amino acid biosynthetic process 39
            4-hydroxyproline biosynthetic process 0
            L-dopa biosynthetic process + 1
            S-methylmethionine biosynthetic process 0
            aerobactin biosynthetic process 0
            amino-acid betaine biosynthetic process + 6
            coenzyme B biosynthetic process 0
            creatine biosynthetic process 2
            folic acid-containing compound biosynthetic process + 7
            glutathione biosynthetic process + 14
            hydroxylysine biosynthetic process 2
            lincomycin biosynthetic process 0
            modified histidine biosynthetic process + 0
            ochratoxin A biosynthetic process 0
            pantothenate biosynthetic process 0
            peptidyl-1-thioglycine biosynthetic process from peptidyl-glycine 0
            phosphagen biosynthetic process + 4
            phosphatidylserine biosynthetic process + 3
            prenylcysteine biosynthetic process 0
            pyrrolysine biosynthetic process 0
            sarcosine biosynthetic process 0
paths to the root