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ONTOLOGY REPORT - ANNOTATIONS

Term:ketone biosynthetic process
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Accession:GO:0042181 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of ketones, a class of organic compounds that contain the carbonyl group, CO, and in which the carbonyl group is bonded only to carbon atoms. The general formula for a ketone is RCOR, where R and R are alkyl or aryl groups.
Synonyms:exact_synonym: ketone anabolism;   ketone biosynthesis;   ketone formation;   ketone synthesis


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ketone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt6 sirtuin 6 involved_in ISO (PMID:30530497) RGD PMID:30530497 NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914 		JBrowse link
aldosterone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cacna1h calcium voltage-gated channel subunit alpha1 H involved_in IMP
IEA
ISO		 PMID:19342457
GO_REF:0000107
(PMID:19342457)		 Ensembl
RGD		 PMID:19342457 PMID:19342457 GO_REF:0000107, RGD:4891166 NCBI chr10:14,390,104...14,448,204
Ensembl chr10:14,390,113...14,448,376 		JBrowse link
G Cyp11b1 cytochrome P450, family 11, subfamily b, polypeptide 1 involved_in IMP
IBA		 PMID:19342457
GO_REF:0000033		 GO_Central PMID:19342457 GO_REF:0000033, RGD:4891166 NCBI chr 7:106,772,597...106,780,536
Ensembl chr 7:106,718,274...106,779,278 		JBrowse link
G Cyp11b2 cytochrome P450, family 11, subfamily b, polypeptide 2 involved_in IDA
IEA
IBA
ISO		 GO_REF:0000107
GO_REF:0000033
(PMID:19342457), (PMID:2256920)		 Ensembl
GO_Central
RGD		 PMID:2256920 PMID:19342457 PMID:11832364 GO_REF:0000033 GO_REF:0000107, RGD:727991 NCBI chr 7:106,838,590...106,845,004
Ensembl chr 7:106,838,590...106,845,004 		JBrowse link
G Cyp11b3 cytochrome P450, family 11, subfamily b, polypeptide 3 involved_in
acts_upstream_of_or_within		 ISO (PMID:1741400), (PMID:19342457), (PMID:2256920), (PMID:23322723)
(PMID:1686470), (PMID:8645611)		 RGD PMID:1686470 PMID:1741400 PMID:2256920 PMID:8645611 PMID:19342457 More... NCBI chr 7:106,808,559...106,814,048
Ensembl chr 7:106,808,559...106,814,048 		JBrowse link
androst-4-ene-3,17-dione biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Inhba inhibin subunit beta A acts_upstream_of_or_within ISO (PMID:32954300) RGD PMID:32954300 NCBI chr17:49,091,635...49,111,573
Ensembl chr17:49,095,920...49,108,982 		JBrowse link
cortisol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cacna1h calcium voltage-gated channel subunit alpha1 H involved_in IMP
IEA
ISO		 PMID:19342457
GO_REF:0000107
(PMID:19342457)		 Ensembl
RGD		 PMID:19342457 PMID:19342457 GO_REF:0000107, RGD:4891166 NCBI chr10:14,390,104...14,448,204
Ensembl chr10:14,390,113...14,448,376 		JBrowse link
G Cyp11b1 cytochrome P450, family 11, subfamily b, polypeptide 1 involved_in IMP PMID:19342457 UniProt PMID:19342457 RGD:4891166 NCBI chr 7:106,772,597...106,780,536
Ensembl chr 7:106,718,274...106,779,278 		JBrowse link
G Cyp11b2 cytochrome P450, family 11, subfamily b, polypeptide 2 involved_in ISO (PMID:19342457), (PMID:2022736), (PMID:8506298) RGD PMID:2022736 PMID:8506298 PMID:19342457 NCBI chr 7:106,838,590...106,845,004
Ensembl chr 7:106,838,590...106,845,004 		JBrowse link
G Cyp11b3 cytochrome P450, family 11, subfamily b, polypeptide 3 NOT|involved_in ISO (PMID:9703385)
(PMID:19342457)		 RGD PMID:9703385 PMID:19342457 NCBI chr 7:106,808,559...106,814,048
Ensembl chr 7:106,808,559...106,814,048 		JBrowse link
menaquinone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ubiad1 UbiA prenyltransferase domain containing 1 involved_in ISO
IBA
ISS
IEA		 (PMID:23169578)
GO_REF:0000033
GO_REF:0000024
GO_REF:0000041		 RGD
GO_Central
UniProt		 PMID:23169578 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041 NCBI chr 5:158,856,582...158,880,490
Ensembl chr 5:158,868,672...158,880,271 		JBrowse link
methylglyoxal biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldoa aldolase, fructose-bisphosphate A IMP RGD PMID:21890532 RGD:13673877 NCBI chr 1:181,402,275...181,407,476
Ensembl chr 1:181,402,275...181,406,182 		JBrowse link
G Tpi1 triosephosphate isomerase 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 4:157,615,283...157,618,813
Ensembl chr 4:157,615,386...157,619,541 		JBrowse link
negative regulation of aldosterone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 involved_in IEA
ISO		 GO_REF:0000107
(PMID:19584291)		 Ensembl
RGD		 PMID:19584291 GO_REF:0000107 NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397 		JBrowse link
G Bmp5 bone morphogenetic protein 5 involved_in ISO (PMID:19584291) RGD PMID:19584291 NCBI chr 8:76,517,164...76,639,925
Ensembl chr 8:76,517,164...76,639,925 		JBrowse link
G Dkk3 dickkopf WNT signaling pathway inhibitor 3 involved_in ISO (PMID:16981135) RGD PMID:16981135 NCBI chr 1:166,237,969...166,281,271
Ensembl chr 1:166,238,238...166,280,590 		JBrowse link
G Rest RE1-silencing transcription factor involved_in ISO
IEA
IMP		 (PMID:19342457)
GO_REF:0000107		 RGD
Ensembl		 PMID:19342457 PMID:19342457 GO_REF:0000107, RGD:4891166 NCBI chr14:30,859,109...30,879,828
Ensembl chr14:30,862,553...30,894,354 		JBrowse link
negative regulation of cortisol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 involved_in ISO
IEA		 (PMID:19584291)
GO_REF:0000107		 RGD
Ensembl		 PMID:19584291 GO_REF:0000107 NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397 		JBrowse link
G Bmp5 bone morphogenetic protein 5 involved_in ISO (PMID:19584291) RGD PMID:19584291 NCBI chr 8:76,517,164...76,639,925
Ensembl chr 8:76,517,164...76,639,925 		JBrowse link
G Dkk3 dickkopf WNT signaling pathway inhibitor 3 involved_in ISO (PMID:16981135) RGD PMID:16981135 NCBI chr 1:166,237,969...166,281,271
Ensembl chr 1:166,238,238...166,280,590 		JBrowse link
G Rest RE1-silencing transcription factor involved_in ISO
IEA
IMP		 (PMID:19342457)
GO_REF:0000107		 RGD
Ensembl		 PMID:19342457 PMID:19342457 GO_REF:0000107, RGD:4891166 NCBI chr14:30,859,109...30,879,828
Ensembl chr14:30,862,553...30,894,354 		JBrowse link
negative regulation of progesterone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prl prolactin involved_in ISO (PMID:24530842) RGD PMID:24530842 NCBI chr17:37,859,999...37,870,062
Ensembl chr17:37,860,007...37,870,062 		JBrowse link
negative regulation of testosterone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkkl1 dickkopf like acrosomal protein 1 involved_in ISO (PMID:18818293) RGD PMID:18818293 NCBI chr 1:95,694,010...95,699,259
Ensembl chr 1:95,694,010...95,699,259 		JBrowse link
G Wnt4 Wnt family member 4 involved_in ISO
IEA		 (PMID:12949260)
GO_REF:0000107		 RGD
Ensembl		 PMID:12949260 GO_REF:0000107 NCBI chr 5:149,513,573...149,535,415
Ensembl chr 5:149,514,018...149,532,859 		JBrowse link
positive regulation of aldosterone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp6 bone morphogenetic protein 6 involved_in ISO (PMID:16527843) RGD PMID:16527843 NCBI chr17:26,318,121...26,469,691
Ensembl chr17:26,318,569...26,470,365 		JBrowse link
G Dab2 DAB adaptor protein 2 IDA RGD PMID:17303656 RGD:7243836 NCBI chr 2:55,514,692...55,567,476
Ensembl chr 2:55,514,700...55,567,476 		JBrowse link
G Wnt4 Wnt family member 4 involved_in ISO
IEA		 (PMID:16981135)
GO_REF:0000107		 RGD
Ensembl		 PMID:16981135 GO_REF:0000107 NCBI chr 5:149,513,573...149,535,415
Ensembl chr 5:149,514,018...149,532,859 		JBrowse link
positive regulation of cortisol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt4 Wnt family member 4 involved_in ISO
IEA		 (PMID:16981135)
GO_REF:0000107		 RGD
Ensembl		 PMID:16981135 GO_REF:0000107 NCBI chr 5:149,513,573...149,535,415
Ensembl chr 5:149,514,018...149,532,859 		JBrowse link
positive regulation of progesterone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppargc1a PPARG coactivator 1 alpha IMP RGD PMID:20133449 RGD:10059648 NCBI chr14:58,860,752...59,516,525
Ensembl chr14:58,861,144...59,512,656 		JBrowse link
progesterone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd3b1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 IDA RGD PMID:1955079 RGD:1625116 NCBI chr 2:186,169,864...186,175,984
Ensembl chr 2:186,169,863...186,175,999 		JBrowse link
G Scp2 sterol carrier protein 2 involved_in ISO (PMID:1703300) RGD PMID:1703300 NCBI chr 5:122,806,949...122,881,259
Ensembl chr 5:122,776,549...122,881,287 		JBrowse link
G Stard3 StAR-related lipid transfer domain containing 3 acts_upstream_of_or_within ISO MGI:3042568 (PMID:14963026) RGD PMID:14963026 NCBI chr10:83,357,329...83,379,873
Ensembl chr10:83,357,359...83,550,976 		JBrowse link
regulation of aldosterone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clcn2 chloride voltage-gated channel 2 involved_in ISO
ISS		 (PMID:29403011)
GO_REF:0000024		 RGD
UniProt		 PMID:29403011 GO_REF:0000024 NCBI chr11:80,197,741...80,211,657
Ensembl chr11:80,198,153...80,211,657 		JBrowse link
regulation of cortisol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dgkq diacylglycerol kinase, theta involved_in ISO (PMID:24369117) RGD PMID:24369117 NCBI chr14:1,059,125...1,073,131
Ensembl chr14:1,059,170...1,073,131 		JBrowse link
G H6pd hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) involved_in ISO (PMID:18628520), (PMID:23132696)
(PMID:16356929)		 RGD PMID:16356929 PMID:18628520 PMID:23132696 NCBI chr 5:160,434,499...160,470,203
Ensembl chr 5:160,438,697...160,470,171 		JBrowse link
regulation of ketone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt5 sirtuin 5 involved_in ISS
ISO		 GO_REF:0000024
(PMID:24315375)		 UniProt
RGD		 PMID:24315375 GO_REF:0000024 NCBI chr17:21,310,028...21,337,137
Ensembl chr17:21,310,028...21,337,101 		JBrowse link
regulation of progesterone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dgkq diacylglycerol kinase, theta involved_in ISO (PMID:24369117) RGD PMID:24369117 NCBI chr14:1,059,125...1,073,131
Ensembl chr14:1,059,170...1,073,131 		JBrowse link
G Egr1 early growth response 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:8703054)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:8703054 GO_REF:0000024 GO_REF:0000107 NCBI chr18:26,462,967...26,466,766
Ensembl chr18:26,462,981...26,466,766 		JBrowse link
G Mir125a microRNA 125a IDA RGD PMID:23045399 RGD:26884342 NCBI chr 1:58,677,626...58,677,710
Ensembl chr 1:58,677,626...58,677,710 		JBrowse link
G Mir455 microRNA 455 IDA RGD PMID:23045399 RGD:26884342 NCBI chr 5:76,689,313...76,689,390
Ensembl chr 5:76,689,313...76,689,390 		JBrowse link
regulation of testosterone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1c3 aldo-keto reductase family 1, member C3 involved_in ISO (PMID:19336506) RGD PMID:19336506 NCBI chr17:66,110,970...66,127,867
Ensembl chr17:66,110,963...66,127,873 		JBrowse link
G Bglap bone gamma-carboxyglutamate protein involved_in ISS
ISO		 GO_REF:0000024
(PMID:21333348)		 UniProt
RGD		 PMID:21333348 GO_REF:0000024 NCBI chr 2:173,838,518...173,839,495
Ensembl chr 2:173,838,518...173,839,495 		JBrowse link
G Creb1 cAMP responsive element binding protein 1 involved_in ISO (PMID:21333348) RGD PMID:21333348 NCBI chr 9:65,903,511...65,972,562
Ensembl chr 9:65,903,547...65,970,816 		JBrowse link
G Gprc6a G protein-coupled receptor, class C, group 6, member A involved_in ISS
ISO		 GO_REF:0000024
(PMID:21333348)		 UniProt
RGD		 PMID:21333348 GO_REF:0000024 NCBI chr20:30,922,106...30,943,412
Ensembl chr20:30,922,106...30,943,412 		JBrowse link
G Prkg1 protein kinase cGMP-dependent 1 IMP RGD PMID:22429315 RGD:7775068 NCBI chr 1:228,409,605...229,638,794
Ensembl chr 1:228,408,947...229,639,080 		JBrowse link
regulation of ubiquinone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adck2 aarF domain containing kinase 2 involved_in ISO (PMID:31480808) RGD PMID:31480808 NCBI chr 4:68,348,853...68,362,725
Ensembl chr 4:68,348,864...68,374,608 		JBrowse link
G Pptc7 protein phosphatase targeting COQ7 involved_in ISO
IBA		 (PMID:30267671)
GO_REF:0000033		 RGD
GO_Central		 PMID:30267671 GO_REF:0000033 NCBI chr12:34,249,963...34,288,339
Ensembl chr12:34,249,977...34,288,339 		JBrowse link
testosterone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1c3 aldo-keto reductase family 1, member C3 involved_in ISO (PMID:16983398) RGD PMID:16983398 NCBI chr17:66,110,970...66,127,867
Ensembl chr17:66,110,963...66,127,873 		JBrowse link
G Cyp11a1 cytochrome P450, family 11, subfamily a, polypeptide 1 IEP RGD PMID:19883722 RGD:4145609 NCBI chr 8:58,422,807...58,434,342
Ensembl chr 8:58,404,669...58,434,338 		JBrowse link
G Cyp19a1 cytochrome P450, family 19, subfamily a, polypeptide 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2154536 (PMID:9618522)		 Ensembl
RGD		 PMID:9618522 GO_REF:0000107 NCBI chr 8:54,552,978...54,580,375
Ensembl chr 8:54,553,165...54,580,758 		JBrowse link
G Hsd17b1 hydroxysteroid (17-beta) dehydrogenase 1 involved_in IDA
ISO		 (PMID:9658408) RGD PMID:9658408 PMID:8612487 RGD:728619 NCBI chr10:86,009,728...86,011,928
Ensembl chr10:86,009,728...86,011,927 		JBrowse link
G Hsd17b3 hydroxysteroid (17-beta) dehydrogenase 3 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr17:1,027,229...1,058,554
Ensembl chr17:1,027,229...1,058,554 		JBrowse link
G Hsd3b1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 IEP RGD PMID:16467141 RGD:4889544 NCBI chr 2:186,169,864...186,175,984
Ensembl chr 2:186,169,863...186,175,999 		JBrowse link
G Inhba inhibin subunit beta A acts_upstream_of_or_within ISO (PMID:32274496) RGD PMID:32274496 NCBI chr17:49,091,635...49,111,573
Ensembl chr17:49,095,920...49,108,982 		JBrowse link
G Srd5a2 steroid 5 alpha-reductase 2 involved_in ISO
ISS		 (PMID:10898110)
GO_REF:0000024		 RGD
UniProt		 PMID:10898110 GO_REF:0000024 NCBI chr 6:21,426,225...21,465,727
Ensembl chr 6:21,426,215...21,462,112 		JBrowse link
G Star steroidogenic acute regulatory protein IEP RGD PMID:19883722 RGD:4145609 NCBI chr16:66,267,094...66,274,368
Ensembl chr16:66,264,807...66,271,672 		JBrowse link
ubiquinone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coq2 coenzyme Q2, polyprenyltransferase involved_in
acts_upstream_of_or_within		 IEA
IBA
ISO
ISS		 GO_REF:0000041
GO_REF:0000033
SGD:S000005324 (PMID:15153069)
GO_REF:0000024
(PMID:15153069), (PMID:16400613), (PMID:17374725), (PMID:27493029)		 UniProt
GO_Central
RGD		 PMID:15153069 PMID:16400613 PMID:17374725 PMID:27493029 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041 NCBI chr14:8,941,429...8,961,418
Ensembl chr14:8,941,461...8,960,891 		JBrowse link
G Coq3 coenzyme Q3 methyltransferase involved_in ISO UniProtKB:P27680 (PMID:10777520) RGD PMID:10777520 NCBI chr 5:35,429,567...35,460,613
Ensembl chr 5:35,429,574...35,460,607 		JBrowse link
G Coq4 coenzyme Q4 involved_in IEA
ISS
ISO		 GO_REF:0000041
GO_REF:0000024
(PMID:30659264), (PMID:38014483)		 UniProt
RGD		 PMID:30659264 PMID:38014483 GO_REF:0000024 GO_REF:0000041 NCBI chr 3:13,060,054...13,070,502
Ensembl chr 3:13,060,455...13,068,799 		JBrowse link
G Coq5 coenzyme Q5, methyltransferase involved_in ISO
IBA
IEA		 UniProtKB:P49017 (PMID:25152161)
GO_REF:0000033
GO_REF:0000041		 RGD
GO_Central
UniProt		 PMID:25152161 GO_REF:0000033 GO_REF:0000041 NCBI chr12:41,316,922...41,333,855
Ensembl chr12:41,316,748...41,333,848 		JBrowse link
G Coq6 coenzyme Q6 monooxygenase involved_in IEA
IBA		 GO_REF:0000041
GO_REF:0000033
GO_REF:0000043		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 NCBI chr 6:104,007,814...104,019,888
Ensembl chr 6:104,007,872...104,024,657 		JBrowse link
G Coq7 coenzyme Q7, hydroxylase involved_in
acts_upstream_of_or_within
NOT|acts_upstream_of_or_within		 IGI
IBA
ISO
ISS
IEA		 GO_REF:0000033
MGI:2157003|MGI:2158322 (PMID:11585841), (PMID:11716496)
MGI:2157003 (PMID:19478076)
(PMID:28409910)
GO_REF:0000024
GO_REF:0000041		 GO_Central
RGD
UniProt		 PMID:11585841 PMID:11716496 PMID:19478076 PMID:28409910 PMID:8660658 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041, RGD:69815 NCBI chr 1:172,836,359...172,851,173
Ensembl chr 1:172,835,188...172,851,158 		JBrowse link
G Coq8a coenzyme Q8A involved_in IEA
IBA
ISS
ISO		 GO_REF:0000041
GO_REF:0000033
GO_REF:0000024
(PMID:25498144), (PMID:27499294)		 UniProt
GO_Central
RGD		 PMID:25498144 PMID:27499294 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041 NCBI chr13:91,904,731...91,933,588
Ensembl chr13:91,904,739...91,931,431 		JBrowse link
G Coq8b coenzyme Q8B involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:27499294)		 UniProt
GO_Central
RGD		 PMID:27499294 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:82,525,578...82,549,182
Ensembl chr 1:82,526,568...82,549,180 		JBrowse link
G Coq9 coenzyme Q9 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA
ISS		 GO_REF:0000041
(PMID:25339443)
MGI:5473628 (PMID:23255162)
GO_REF:0000033
GO_REF:0000024		 UniProt
RGD
GO_Central		 PMID:23255162 PMID:25339443 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041 NCBI chr19:10,166,948...10,179,976
Ensembl chr19:10,166,951...10,179,949 		JBrowse link
G Ndufa9 NADH:ubiquinone oxidoreductase subunit A9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:159,659,242...159,688,034
Ensembl chr 4:159,659,242...159,688,018 		JBrowse link
G Pdss1 decaprenyl diphosphate synthase subunit 1 involved_in ISO
IBA		 (PMID:16262699)
GO_REF:0000033		 RGD
GO_Central		 PMID:16262699 GO_REF:0000033 NCBI chr17:85,059,953...85,098,739
Ensembl chr17:85,060,106...85,098,730 		JBrowse link
G Pdss2 decaprenyl diphosphate synthase subunit 2 involved_in IEA
ISO
IBA		 GO_REF:0000041
(PMID:16262699)
GO_REF:0000033		 UniProt
RGD
GO_Central		 PMID:16262699 GO_REF:0000033 GO_REF:0000041 NCBI chr20:46,709,631...46,938,704
Ensembl chr20:46,709,649...46,938,708 		JBrowse link
G Rtn4ip1 reticulon 4 interacting protein 1 involved_in ISO (PMID:37884807) RGD PMID:37884807 NCBI chr20:47,382,251...47,422,747
Ensembl chr20:47,382,234...47,422,338 		JBrowse link
G Ubiad1 UbiA prenyltransferase domain containing 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:23374346)		 UniProt
RGD		 PMID:23374346 GO_REF:0000024 NCBI chr 5:158,856,582...158,880,490
Ensembl chr 5:158,868,672...158,880,271 		JBrowse link
ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coq3 coenzyme Q3 methyltransferase involved_in IGI
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:8125303 GO_REF:0000033, RGD:69814 NCBI chr 5:35,429,567...35,460,613
Ensembl chr 5:35,429,574...35,460,607 		JBrowse link
G Ubiad1 UbiA prenyltransferase domain containing 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:158,856,582...158,880,490
Ensembl chr 5:158,868,672...158,880,271 		JBrowse link
vitamin K biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ubiad1 UbiA prenyltransferase domain containing 1 involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:20953171), (PMID:23169578)		 UniProt
GO_Central
RGD		 PMID:20953171 PMID:23169578 GO_REF:0000024 GO_REF:0000033 NCBI chr 5:158,856,582...158,880,490
Ensembl chr 5:158,868,672...158,880,271 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20076
    cellular process 19155
      metabolic process 11953
        ketone metabolic process 245
          ketone biosynthetic process 55
            (+)-camphor biosynthetic process 0
            1,5-anhydro-D-fructose biosynthetic process 0
            11-oxo-beta-amyrin biosynthetic process 0
            DIF-1 biosynthetic process 0
            acetoin biosynthetic process 0
            aldosterone biosynthetic process + 12
            andrastin A biosynthetic process 0
            androst-4-ene-3,17-dione biosynthetic process + 1
            asperfuranone biosynthetic process + 0
            asperthecin biosynthetic process + 0
            aurone biosynthetic process 0
            averantin biosynthetic process 0
            brexanolone biosynthetic process 0
            chalcone biosynthetic process 0
            conidiogenone biosynthetic process 0
            cortisol biosynthetic process + 11
            cspyrone B1 biosynthetic process 0
            daunorubicin biosynthetic process 0
            ecdysteroid biosynthetic process + 0
            ecgonone methyl ester biosynthetic process 0
            emodin biosynthetic process + 0
            endocrocin biosynthetic process + 0
            epothilone biosynthetic process 0
            funalenone biosynthetic process 0
            glycyrrhetinate biosynthetic process 0
            granaticin biosynthetic process 0
            helvolic acid biosynthetic process + 0
            ilicicolin H biosynthetic process 0
            kojic acid biosynthetic process + 0
            menaquinone biosynthetic process 1
            methylglyoxal biosynthetic process 2
            mitomycin C biosynthetic process 0
            monodictyphenone biosynthetic process + 0
            naphtho-gamma-pyrone biosynthetic process + 0
            neosartoricin biosynthetic process + 0
            novofumigatonin biosynthetic process 0
            paraherquonin biosynthetic process 0
            paxilline biosynthetic process 0
            progesterone biosynthetic process + 9
            pyrroloquinoline quinone biosynthetic process 0
            quinone biosynthetic process + 16
            regulation of ketone biosynthetic process + 24
            shamixanthone biosynthetic process 0
            tensidol A biosynthetic process + 0
            tensidol B biosynthetic process + 0
            testosterone biosynthetic process + 15
            tetracenomycin C biosynthetic process 0
            tetracycline biosynthetic process 0
            undecan-2-one biosynthetic process 0
            viridicatumtoxin biosynthetic process 0
            vitamin K biosynthetic process + 1
            vomitoxin biosynthetic process 0
            xanthone-containing compound biosynthetic process + 0
Path 2
Term Annotations click to browse term
  biological_process 20076
    cellular process 19155
      metabolic process 11953
        biosynthetic process 8474
          small molecule biosynthetic process 626
            ketone biosynthetic process 55
              (+)-camphor biosynthetic process 0
              1,5-anhydro-D-fructose biosynthetic process 0
              11-oxo-beta-amyrin biosynthetic process 0
              DIF-1 biosynthetic process 0
              acetoin biosynthetic process 0
              aldosterone biosynthetic process + 12
              andrastin A biosynthetic process 0
              androst-4-ene-3,17-dione biosynthetic process + 1
              asperfuranone biosynthetic process + 0
              asperthecin biosynthetic process + 0
              aurone biosynthetic process 0
              averantin biosynthetic process 0
              brexanolone biosynthetic process 0
              chalcone biosynthetic process 0
              conidiogenone biosynthetic process 0
              cortisol biosynthetic process + 11
              cspyrone B1 biosynthetic process 0
              daunorubicin biosynthetic process 0
              ecdysteroid biosynthetic process + 0
              ecgonone methyl ester biosynthetic process 0
              emodin biosynthetic process + 0
              endocrocin biosynthetic process + 0
              epothilone biosynthetic process 0
              funalenone biosynthetic process 0
              glycyrrhetinate biosynthetic process 0
              granaticin biosynthetic process 0
              helvolic acid biosynthetic process + 0
              ilicicolin H biosynthetic process 0
              kojic acid biosynthetic process + 0
              menaquinone biosynthetic process 1
              methylglyoxal biosynthetic process 2
              mitomycin C biosynthetic process 0
              monodictyphenone biosynthetic process + 0
              naphtho-gamma-pyrone biosynthetic process + 0
              neosartoricin biosynthetic process + 0
              novofumigatonin biosynthetic process 0
              paraherquonin biosynthetic process 0
              paxilline biosynthetic process 0
              progesterone biosynthetic process + 9
              pyrroloquinoline quinone biosynthetic process 0
              quinone biosynthetic process + 16
              regulation of ketone biosynthetic process + 24
              shamixanthone biosynthetic process 0
              tensidol A biosynthetic process + 0
              tensidol B biosynthetic process + 0
              testosterone biosynthetic process + 15
              tetracenomycin C biosynthetic process 0
              tetracycline biosynthetic process 0
              undecan-2-one biosynthetic process 0
              viridicatumtoxin biosynthetic process 0
              vitamin K biosynthetic process + 1
              vomitoxin biosynthetic process 0
              xanthone-containing compound biosynthetic process + 0
paths to the root