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ONTOLOGY REPORT - ANNOTATIONS

Term:telomeric DNA binding
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Accession:GO:0042162 term browser browse the term
Definition:Binding to a telomere, a specific structure at the end of a linear chromosome required for the integrity and maintenance of the end.
Synonyms:exact_synonym: telomere binding;   telomeric repeat binding


show annotations for term's descendants           Sort by:
telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acd ACD, shelterin complex subunit and telomerase recruitment factor enables ISO
IBA
IEA		 (PMID:23685356)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:23685356 GO_REF:0000033 GO_REF:0000107 NCBI chr19:33,586,739...33,589,481
Ensembl chr19:33,586,745...33,589,461 		JBrowse link
G Ctc1 CST telomere replication complex component 1 enables ISO
IBA		 (PMID:19854130)
GO_REF:0000033		 RGD
GO_Central		 PMID:19854130 GO_REF:0000033 NCBI chr10:53,714,614...53,735,298
Ensembl chr10:53,714,644...53,735,298 		JBrowse link
G Hmbox1 homeobox containing 1 enables ISO (PMID:23685356) RGD PMID:23685356 NCBI chr15:39,067,805...39,200,633
Ensembl chr15:39,067,804...39,200,323 		JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D enables ISS
ISO		 GO_REF:0000024
(PMID:8321232)		 UniProt
RGD		 PMID:8321232 GO_REF:0000024 NCBI chr14:9,615,375...9,638,975
Ensembl chr14:9,615,479...9,633,786 		JBrowse link
G Kdm1a lysine demethylase 1A NOT|enables ISO (PMID:24529708) RGD PMID:24529708 NCBI chr 5:148,782,976...148,838,319
Ensembl chr 5:148,782,976...148,838,319 		JBrowse link
G Ncl nucleolin enables ISO
ISS
IEA		 (PMID:8321232)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:8321232 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:86,999,588...87,008,112
Ensembl chr 9:86,998,019...87,008,136 		JBrowse link
G Pif1 PIF1 5'-to-3' DNA helicase enables ISO (PMID:16522649) RGD PMID:16522649 NCBI chr 8:66,110,641...66,120,202
Ensembl chr 8:66,111,072...66,120,200 		JBrowse link
G Pot1 protection of telomeres 1 enables ISO (PMID:23685356), (PMID:27013236), (PMID:30586141), (PMID:35420632), (PMID:37140166)
(PMID:19854130), (PMID:23685356)		 RGD PMID:19854130 PMID:23685356 PMID:27013236 PMID:30586141 PMID:35420632 More... NCBI chr 4:54,205,330...54,263,137
Ensembl chr 4:54,205,332...54,263,042 		JBrowse link
G Rpa2 replication protein A2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:144,976,789...144,989,445
Ensembl chr 5:144,976,748...144,987,350 		JBrowse link
G Smg1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase enables ISO (PMID:17916692) RGD PMID:17916692 NCBI chr 1:172,441,892...172,543,667
Ensembl chr 1:172,444,936...172,543,698 		JBrowse link
G Smg5 SMG5 nonsense mediated mRNA decay factor enables ISO
IBA		 (PMID:17916692)
GO_REF:0000033		 RGD
GO_Central		 PMID:17916692 GO_REF:0000033 NCBI chr 2:173,804,987...173,832,102
Ensembl chr 2:173,805,019...173,832,102 		JBrowse link
G Smg5l1 Smg5 nonsense mediated mRNA decay factor like 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:75,917,527...76,051,832
Ensembl chr 7:75,917,392...76,052,413 		JBrowse link
G Smg6 SMG6 nonsense mediated mRNA decay factor enables ISO
IBA		 (PMID:12699629), (PMID:17916692)
GO_REF:0000033		 RGD
GO_Central		 PMID:12699629 PMID:17916692 GO_REF:0000033 NCBI chr10:59,786,258...60,014,395
Ensembl chr10:59,786,258...60,014,395 		JBrowse link
G Smg7 SMG7 nonsense mediated mRNA decay factor enables ISO
IBA		 (PMID:17916692)
GO_REF:0000033		 RGD
GO_Central		 PMID:17916692 GO_REF:0000033 NCBI chr13:64,986,145...65,050,698
Ensembl chr13:64,987,434...65,050,582 		JBrowse link
G Stn1 STN1 subunit of CST complex enables ISO
IBA		 (PMID:19854130)
GO_REF:0000033		 RGD
GO_Central		 PMID:19854130 GO_REF:0000033 NCBI chr 1:246,391,311...246,429,844
Ensembl chr 1:246,395,613...246,429,531 		JBrowse link
G Telo2 telomere maintenance 2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:14,120,491...14,135,729
Ensembl chr10:14,120,818...14,135,698 		JBrowse link
G Ten1 TEN1 subunit of CST complex enables ISO
IBA		 (PMID:19854130)
GO_REF:0000033		 RGD
GO_Central		 PMID:19854130 GO_REF:0000033 NCBI chr10:101,431,328...101,455,105
Ensembl chr10:101,431,328...101,453,052 		JBrowse link
G Terf1 telomeric repeat binding factor 1 enables ISO (PMID:19265708), (PMID:19487455), (PMID:19854130), (PMID:23685356), (PMID:24415760)
(PMID:19854130), (PMID:23685356)
(PMID:9391075)
(PMID:9034193)		 RGD PMID:9034193 PMID:9391075 PMID:19265708 PMID:19487455 PMID:19854130 More... NCBI chr 5:3,443,103...3,472,377
Ensembl chr 5:3,443,106...3,472,340 		JBrowse link
G Terf2 telomeric repeat binding factor 2 enables ISO (PMID:19854130), (PMID:20655466), (PMID:23685356)
(PMID:23685356)		 RGD PMID:19854130 PMID:20655466 PMID:23685356 NCBI chr19:34,976,963...35,005,813
Ensembl chr19:34,977,471...35,005,819 		JBrowse link
G Terf2ip TERF2 interacting protein enables IBA
ISO		 GO_REF:0000033
(PMID:23685356)		 GO_Central
RGD		 PMID:23685356 GO_REF:0000033 NCBI chr19:39,976,965...39,984,055
Ensembl chr19:39,976,906...39,984,064 		JBrowse link
G Tert telomerase reverse transcriptase enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:29,637,213...29,659,561
Ensembl chr 1:29,637,506...29,659,561 		JBrowse link
G Tinf2 TERF1 interacting nuclear factor 2 enables ISO (PMID:12768206), (PMID:23685356)
(PMID:23685356)		 RGD PMID:12768206 PMID:23685356 NCBI chr15:29,170,663...29,178,015
Ensembl chr15:29,170,652...29,176,984 		JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 enables ISO (PMID:17053789) RGD PMID:17053789 NCBI chr 3:108,166,574...108,270,229
Ensembl chr 3:108,169,980...108,269,822 		JBrowse link
G Upf1 UPF1, RNA helicase and ATPase enables ISO (PMID:17916692), (PMID:21829167) RGD PMID:17916692 PMID:21829167 NCBI chr16:19,076,594...19,097,365
Ensembl chr16:19,076,322...19,096,568 		JBrowse link
G Upf2 UPF2, regulator of nonsense mediated mRNA decay enables ISO (PMID:17916692) RGD PMID:17916692 NCBI chr17:72,224,575...72,335,896
Ensembl chr17:72,225,316...72,335,855 		JBrowse link
G Upf3a UPF3A, regulator of nonsense mediated mRNA decay enables ISO
IBA		 (PMID:17916692)
GO_REF:0000033		 RGD
GO_Central		 PMID:17916692 GO_REF:0000033 NCBI chr16:75,757,442...75,768,478
Ensembl chr16:75,757,441...75,769,345 		JBrowse link
G Xrcc5 X-ray repair cross complementing 5 enables ISO
IBA		 (PMID:10535943)
GO_REF:0000033		 RGD
GO_Central		 PMID:10535943 GO_REF:0000033 NCBI chr 9:73,955,216...74,044,020
Ensembl chr 9:73,955,216...74,044,018 		JBrowse link
G Xrcc6 X-ray repair cross complementing 6 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:113,542,992...113,563,762
Ensembl chr 7:113,543,057...113,563,762 		JBrowse link
G Zbtb10 zinc finger and BTB domain containing 10 enables ISO
IEA		 (PMID:30629181)
GO_REF:0000107		 RGD
Ensembl		 PMID:30629181 GO_REF:0000107 NCBI chr 2:92,475,254...92,509,892
Ensembl chr 2:92,479,014...92,512,515 		JBrowse link
C-rich strand telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nabp2 nucleic acid binding protein 2 NOT|enables ISO (PMID:25589350) RGD PMID:25589350 NCBI chr 7:830,949...836,551
Ensembl chr 7:830,949...838,027 		JBrowse link
double-stranded telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 enables ISO
IEA		 (PMID:24703901)
GO_REF:0000107		 RGD
Ensembl		 PMID:24703901 GO_REF:0000107 NCBI chr15:24,144,595...24,146,785
Ensembl chr15:24,144,362...24,146,785 		JBrowse link
G Hmbox1 homeobox containing 1 enables ISO (PMID:23685356) RGD PMID:23685356 NCBI chr15:39,067,805...39,200,633
Ensembl chr15:39,067,804...39,200,323 		JBrowse link
G Pura purine rich element binding protein A enables ISO
IEA		 (PMID:15777841)
GO_REF:0000107		 RGD
Ensembl		 PMID:15777841 GO_REF:0000107 NCBI chr18:27,885,071...27,905,509
Ensembl chr18:27,884,556...27,905,513 		JBrowse link
G Rad50 RAD50 double strand break repair protein enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:37,809,353...37,861,309
Ensembl chr10:37,808,726...37,861,396 		JBrowse link
G Terf1 telomeric repeat binding factor 1 enables ISO (PMID:1406665)
(PMID:12768206), (PMID:12782650), (PMID:15608617), (PMID:21852327)		 RGD PMID:1406665 PMID:12768206 PMID:12782650 PMID:15608617 PMID:21852327 NCBI chr 5:3,443,103...3,472,377
Ensembl chr 5:3,443,106...3,472,340 		JBrowse link
G Terf2 telomeric repeat binding factor 2 enables IBA
ISO		 GO_REF:0000033
(PMID:9326950)
(PMID:18812185), (PMID:21852327), (PMID:28216226)		 GO_Central
RGD		 PMID:9326950 PMID:18812185 PMID:21852327 PMID:28216226 GO_REF:0000033 NCBI chr19:34,976,963...35,005,813
Ensembl chr19:34,977,471...35,005,819 		JBrowse link
G Xrcc5 X-ray repair cross complementing 5 contributes_to ISO (PMID:10409678) RGD PMID:10409678 NCBI chr 9:73,955,216...74,044,020
Ensembl chr 9:73,955,216...74,044,018 		JBrowse link
G Xrcc6 X-ray repair cross complementing 6 contributes_to ISO (PMID:10409678) RGD PMID:10409678 NCBI chr 7:113,542,992...113,563,762
Ensembl chr 7:113,543,057...113,563,762 		JBrowse link
G Zbtb48 zinc finger and BTB domain containing 48 enables ISO (PMID:28082411) RGD PMID:28082411 NCBI chr 5:162,525,234...162,533,604
Ensembl chr 5:162,525,235...162,533,585 		JBrowse link
G-rich strand telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctc1 CST telomere replication complex component 1 enables ISO (PMID:22763445) RGD PMID:22763445 NCBI chr10:53,714,614...53,735,298
Ensembl chr10:53,714,644...53,735,298 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 enables ISO
IEA		 (PMID:23935072)
GO_REF:0000107		 RGD
Ensembl		 PMID:23935072 GO_REF:0000107 NCBI chr 7:134,375,318...134,381,610
Ensembl chr 7:134,375,150...134,381,609 		JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 enables IDA PMID:23184978 BHF-UCL PMID:23184978 RGD:11567256 NCBI chr 4:80,534,659...80,545,297
Ensembl chr 4:80,534,651...80,545,249 		JBrowse link
G Nabp2 nucleic acid binding protein 2 enables ISO
IEA		 (PMID:25589350)
GO_REF:0000107		 RGD
Ensembl		 PMID:25589350 GO_REF:0000107 NCBI chr 7:830,949...836,551
Ensembl chr 7:830,949...838,027 		JBrowse link
G Pot1 protection of telomeres 1 enables ISO
IBA		 (PMID:17237768), (PMID:21852327), (PMID:22763445)
GO_REF:0000033		 RGD
GO_Central		 PMID:17237768 PMID:21852327 PMID:22763445 GO_REF:0000033 NCBI chr 4:54,205,330...54,263,137
Ensembl chr 4:54,205,332...54,263,042 		JBrowse link
G Pot1b protection of telomeres 1B enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:9,670,355...9,728,624
Ensembl chr 9:9,670,362...9,728,532 		JBrowse link
G Rpa1 replication protein A1 enables ISO (PMID:16973897), (PMID:24747047), (PMID:26041456) RGD PMID:16973897 PMID:24747047 PMID:26041456 NCBI chr10:60,148,869...60,199,970
Ensembl chr10:60,148,793...60,199,949 		JBrowse link
G Rpa2 replication protein A2 enables ISO (PMID:24747047) RGD PMID:24747047 NCBI chr 5:144,976,789...144,989,445
Ensembl chr 5:144,976,748...144,987,350 		JBrowse link
G Terf1 telomeric repeat binding factor 1 enables ISO (PMID:17694070) RGD PMID:17694070 NCBI chr 5:3,443,103...3,472,377
Ensembl chr 5:3,443,106...3,472,340 		JBrowse link
G Terf2 telomeric repeat binding factor 2 enables ISO
IBA		 (PMID:17694070)
GO_REF:0000033		 RGD
GO_Central		 PMID:17694070 GO_REF:0000033 NCBI chr19:34,976,963...35,005,813
Ensembl chr19:34,977,471...35,005,819 		JBrowse link
single-stranded telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENSRNOG00000069815 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 4:30,933,948...30,935,941 JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 enables ISO
IBA
IEA
IDA		 (PMID:15659580)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:15659580 PMID:15659580 GO_REF:0000033 GO_REF:0000107, RGD:10680046 NCBI chr 4:80,534,659...80,545,297
Ensembl chr 4:80,534,651...80,545,249 		JBrowse link
G LOC108350566 heterogeneous nuclear ribonucleoproteins A2/B1 pseudogene enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:118,679,416...118,680,923
Ensembl chr 3:118,679,472...118,680,908
Ensembl chr 3:118,679,472...118,680,908 		JBrowse link
G Pot1 protection of telomeres 1 enables ISO (PMID:12768206), (PMID:15632080), (PMID:17237767)
(PMID:17053789)		 RGD PMID:12768206 PMID:15632080 PMID:17053789 PMID:17237767 NCBI chr 4:54,205,330...54,263,137
Ensembl chr 4:54,205,332...54,263,042 		JBrowse link
G Rad50 RAD50 double strand break repair protein enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:37,809,353...37,861,309
Ensembl chr10:37,808,726...37,861,396 		JBrowse link
G Rpa1 replication protein A1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:60,148,869...60,199,970
Ensembl chr10:60,148,793...60,199,949 		JBrowse link
G Stn1 STN1 subunit of CST complex enables ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000002
(PMID:19648609)
GO_REF:0000104		 UniProt
InterPro
RGD		 PMID:19648609 GO_REF:0000002 GO_REF:0000024 GO_REF:0000104 NCBI chr 1:246,391,311...246,429,844
Ensembl chr 1:246,395,613...246,429,531 		JBrowse link
telomeric G-quadruplex DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase enables ISO (PMID:19734539) RGD PMID:19734539 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312 		JBrowse link
G Pot1 protection of telomeres 1 NOT|enables ISO (PMID:19734539) RGD PMID:19734539 NCBI chr 4:54,205,330...54,263,137
Ensembl chr 4:54,205,332...54,263,042 		JBrowse link
G Wrn WRN RecQ like helicase enables ISO (PMID:19734539) RGD PMID:19734539 NCBI chr16:58,763,517...58,898,604
Ensembl chr16:58,763,504...58,895,450 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 21087
    binding 18096
      nucleic acid binding 3967
        DNA binding 2329
          sequence-specific DNA binding 1527
            telomeric DNA binding 42
              double-stranded telomeric DNA binding 9
              double-stranded/single-stranded junction telomeric DNA binding 0
              single-stranded telomeric DNA binding + 14
              telomeric G-quadruplex DNA binding 3
paths to the root