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ONTOLOGY REPORT - ANNOTATIONS


Term:lipoprotein catabolic process
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Accession:GO:0042159 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of any conjugated, water-soluble protein in which the covalently attached nonprotein group consists of a lipid or lipids.
Synonyms:exact_synonym: lipoprotein breakdown;   lipoprotein catabolism;   lipoprotein degradation



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lipoprotein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apob apolipoprotein B involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:107202 (PMID:15863839)
Ensembl
RGD
PMID:15863839 GO_REF:0000107 NCBI chr 6:36,563,704...36,603,300
Ensembl chr 6:30,844,368...30,892,497
JBrowse link
G Apoc2 apolipoprotein C2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:88,457,397...88,462,365
Ensembl chr 1:79,329,428...79,334,476
JBrowse link
G Apoe apolipoprotein E acts_upstream_of_or_within ISO MGI:1857303 (PMID:17720994) RGD PMID:17720994 NCBI chr 1:88,481,889...88,485,816
Ensembl chr 1:79,353,916...79,357,932
JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO MGI:88057 (PMID:15863839) RGD PMID:15863839 NCBI chr 8:62,724,939...62,829,040
Ensembl chr 8:53,831,093...53,932,437
JBrowse link
G Ctsd cathepsin D involved_in ISO
IEA
(PMID:16997486)
GO_REF:0000107
RGD
Ensembl
PMID:16997486 GO_REF:0000107 NCBI chr 1:206,956,945...206,968,821
Ensembl chr 1:197,527,467...197,539,488
JBrowse link
G Ldlr low density lipoprotein receptor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857212 (PMID:15741654), (PMID:15805190), (PMID:9788969)
Ensembl
RGD
PMID:9788969 PMID:15741654 PMID:15805190 GO_REF:0000107 NCBI chr 8:28,546,191...28,569,075
Ensembl chr 8:20,270,041...20,294,580
JBrowse link
G Lipa lipase A, lysosomal acid type involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:6364606 (PMID:33357458)
Ensembl
RGD
PMID:33357458 GO_REF:0000107 NCBI chr 1:241,437,524...241,470,936
Ensembl chr 1:232,024,356...232,057,633
JBrowse link
protein depalmitoleylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Notum NOTUM, palmitoleoyl-protein carboxylesterase involved_in ISO (PMID:25731175) RGD PMID:25731175 NCBI chr10:105,933,245...105,940,327
Ensembl chr10:105,933,249...105,940,315
JBrowse link
protein depalmitoylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abhd10 abhydrolase domain containing 10, depalmitoylase involved_in ISS
ISO
GO_REF:0000024
(PMID:31740833)
UniProt
RGD
PMID:31740833 GO_REF:0000024 NCBI chr11:55,081,273...55,095,044
Ensembl chr11:55,081,049...55,107,866
JBrowse link
G Abhd12 abhydrolase domain containing 12, lysophospholipase involved_in ISO (PMID:27307232) RGD PMID:27307232 NCBI chr 3:160,119,724...160,179,959
Ensembl chr 3:139,659,317...139,719,564
JBrowse link
G Abhd13 abhydrolase domain containing 13 involved_in ISO (PMID:27307232) RGD PMID:27307232 NCBI chr16:79,501,879...79,516,712
Ensembl chr16:79,501,727...79,516,748
JBrowse link
G Abhd17a abhydrolase domain containing 17A, depalmitoylase involved_in IDA
ISO
PMID:27307232
UniProtKB:Q5VST6|UniProtKB:Q6PCB6 (PMID:26701913)
RGD PMID:26701913 PMID:27307232 RGD:13441201 NCBI chr 7:9,775,016...9,781,447
Ensembl chr 7:9,124,332...9,130,762
JBrowse link
G Abhd17b abhydrolase domain containing 17B, depalmitoylase involved_in ISO UniProtKB:Q6PCB6|UniProtKB:Q96GS6 (PMID:26701913)
(PMID:27307232), (PMID:28521134)
RGD PMID:26701913 PMID:27307232 PMID:28521134 NCBI chr 1:219,198,294...219,232,733
Ensembl chr 1:219,198,471...219,231,933
JBrowse link
G Abhd17c abhydrolase domain containing 17C, depalmitoylase involved_in ISO UniProtKB:Q5VST6|UniProtKB:Q96GS6 (PMID:26701913)
(PMID:27307232)
RGD PMID:26701913 PMID:27307232 NCBI chr 1:138,084,632...138,125,595
Ensembl chr 1:138,084,634...138,125,595
JBrowse link
G Lypla1 lysophospholipase 1 involved_in
acts_upstream_of_or_within
ISO
ISS
(PMID:27307232)
(PMID:19439193), (PMID:27481942)
(PMID:22399288)
GO_REF:0000024
RGD
UniProt
PMID:19439193 PMID:22399288 PMID:27307232 PMID:27481942 GO_REF:0000024 NCBI chr 5:19,477,408...19,506,568
Ensembl chr 5:14,679,606...14,708,746
JBrowse link
G Lypla2 lysophospholipase 2 involved_in ISO
ISS
(PMID:27307232)
(PMID:28826475)
GO_REF:0000024
RGD
UniProt
PMID:27307232 PMID:28826475 GO_REF:0000024 NCBI chr 5:153,481,973...153,486,692
Ensembl chr 5:148,198,439...148,203,092
JBrowse link
G Lyplal1 lysophospholipase-like 1 acts_upstream_of_or_within ISO (PMID:22399288) RGD PMID:22399288 NCBI chr13:100,158,060...100,189,339
Ensembl chr13:97,626,451...97,657,867
JBrowse link
G Ppt1 palmitoyl-protein thioesterase 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2176390 (PMID:11717424), (PMID:16242638)
(PMID:10658183), (PMID:10737604)
PMID:8895569
UniProt
RGD
PMID:10658183 PMID:10737604 PMID:11717424 PMID:16242638 PMID:8895569 GO_REF:0000024, RGD:8553248 NCBI chr 5:140,406,318...140,427,201
Ensembl chr 5:135,121,163...135,142,048
JBrowse link

Term paths to the root
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Term Annotations click to browse term
  biological_process 20536
    cellular process 19525
      metabolic process 12160
        catabolic process 2919
          macromolecule catabolic process 1678
            protein catabolic process 1199
              lipoprotein catabolic process 18
                protein depalmitoleylation 1
                protein depalmitoylation 10
paths to the root