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ONTOLOGY REPORT - ANNOTATIONS

Term:intraciliary transport
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Accession:GO:0042073 term browser browse the term
Definition:The bidirectional movement of large protein complexes along microtubules within a cilium, mediated by motor proteins.
Comment:Note that we deem cilium and microtubule-based flagellum to be equivalent.
Synonyms:exact_synonym: intraflagellar transport;   intraflagellar transport involved in cilium organization;   intraflagellar transport involved in microtubule-based flagellum organisation
 related_synonym: IFT
 alt_id: GO:0035734
 xref: Wikipedia:Intraflagellar_transport
 only_in_taxon: NCBITaxon:2759 ! Eukaryota
 never_in_taxon: NCBITaxon:3176 ! Zygnematales;   NCBITaxon:3312 ! Coniferophyta;   NCBITaxon:3378 ! Gnetales;   NCBITaxon:3398 ! Magnoliophyta;   NCBITaxon:4890 ! Ascomycota;   NCBITaxon:5782 ! Dictyostelium


show annotations for term's descendants           Sort by:
intraciliary transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl3 ARF like GTPase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:21289087)		 Ensembl
RGD		 PMID:21289087 GO_REF:0000107 NCBI chr 1:245,400,659...245,446,673
Ensembl chr 1:245,400,550...245,446,820 		JBrowse link
G Bbs12 Bardet-Biedl syndrome 12 acts_upstream_of_or_within ISO MGI:5444297 (PMID:22869374) RGD PMID:22869374 NCBI chr 2:120,203,396...120,221,024
Ensembl chr 2:120,203,428...120,219,255 		JBrowse link
G Cep131 centrosomal protein 131 acts_upstream_of_or_within ISO MGI:3870375 (PMID:24415959) RGD PMID:24415959 NCBI chr10:105,346,015...105,370,380
Ensembl chr10:105,346,015...105,370,380 		JBrowse link
G Cilk1 ciliogenesis associated kinase 1 involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:24797473)		 UniProt
GO_Central
RGD		 PMID:24797473 GO_REF:0000024 GO_REF:0000033 NCBI chr 8:78,984,075...79,042,695
Ensembl chr 8:78,984,258...79,042,691 		JBrowse link
G Daw1 dynein assembly factor with WD repeats 1 acts_upstream_of_or_within_positive_effect ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 9:84,435,552...84,472,632
Ensembl chr 9:84,435,552...84,472,635 		JBrowse link
G Dync2i2 dynein 2 intermediate chain 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:13,306,039...13,322,121
Ensembl chr 3:13,306,039...13,322,121 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (PMID:29220510) RGD PMID:29220510 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO MGI:5311828 (PMID:24619649) RGD PMID:24619649 NCBI chr10:14,032,665...14,121,682
Ensembl chr10:14,032,648...14,120,433 		JBrowse link
G Ift172 intraflagellar transport 172 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:25,081,933...25,121,271
Ensembl chr 6:25,081,980...25,120,860 		JBrowse link
G Ift20 intraflagellar transport 20 acts_upstream_of_or_within ISO (PMID:24619649) RGD PMID:24619649 NCBI chr10:63,432,597...63,438,125
Ensembl chr10:63,432,633...63,438,124 		JBrowse link
G Ift25 intraflagellar transport 25 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:122,035,588...122,062,421
Ensembl chr 5:122,035,581...122,062,421 		JBrowse link
G Ift27 intraflagellar transport 27 involved_in ISO
IBA		 (PMID:25443296)
GO_REF:0000033
(PMID:25446516)		 RGD
GO_Central		 PMID:25443296 PMID:25446516 GO_REF:0000033 NCBI chr 7:109,738,622...109,754,416
Ensembl chr 7:109,738,622...109,754,416 		JBrowse link
G Ift46 intraflagellar transport 46 involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 8:45,081,593...45,104,052
Ensembl chr 8:45,087,440...45,104,052 		JBrowse link
G Ift52 intraflagellar transport 52 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:151,672,505...151,696,975
Ensembl chr 3:151,672,493...151,696,980 		JBrowse link
G Ift56 intraflagellar transport 56 involved_in ISS
ISO		 GO_REF:0000024
(PMID:25340710)		 UniProt
RGD		 PMID:25340710 GO_REF:0000024 NCBI chr 4:67,090,622...67,154,707
Ensembl chr 4:67,090,660...67,147,903 		JBrowse link
G Ift57 intraflagellar transport 57 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:51,051,520...51,124,909
Ensembl chr11:51,059,611...51,124,812 		JBrowse link
G Ift70a1 intraflagellar transport 70A1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:60,901,896...60,905,350
Ensembl chr 3:60,901,896...60,905,350 		JBrowse link
G Ift70a2 intraflagellar transport 70A2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:60,899,193...60,901,634
Ensembl chr 3:60,899,196...60,901,634 		JBrowse link
G Ift70b intraflagellar transport 70B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:60,855,809...60,858,380
Ensembl chr 3:60,855,575...60,858,389 		JBrowse link
G Ift81 intraflagellar transport 81 involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr12:33,957,744...34,037,164
Ensembl chr12:33,957,806...34,037,057 		JBrowse link
G Kif3b kinesin family member 3B involved_in ISO (PMID:32386558) RGD PMID:32386558 NCBI chr 3:141,758,466...141,798,012
Ensembl chr 3:141,758,466...141,797,963 		JBrowse link
G Lca5 lebercilin LCA5 acts_upstream_of_or_within
involved_in		 ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:21606596)		 UniProt
GO_Central
RGD		 PMID:21606596 GO_REF:0000024 GO_REF:0000033 NCBI chr 8:84,307,696...84,375,025
Ensembl chr 8:84,317,659...84,374,956 		JBrowse link
G Lca5l lebercilin LCA5 like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:35,460,646...35,495,133
Ensembl chr11:35,461,118...35,495,047 		JBrowse link
G Mak male germ cell-associated kinase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:23,683,753...23,731,125
Ensembl chr17:23,693,878...23,730,001 		JBrowse link
G Nme7 NME/NM23 family member 7 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:21289087)
GO_REF:0000107		 RGD
Ensembl		 PMID:21289087 GO_REF:0000107 NCBI chr13:76,657,303...76,786,768
Ensembl chr13:76,657,367...76,786,765 		JBrowse link
G Rabl2 RAB, member of RAS oncogene family like 2 involved_in ISO (PMID:28625565) RGD PMID:28625565 NCBI chr 7:120,652,175...120,660,906
Ensembl chr 7:120,652,175...120,660,783 		JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator involved_in ISO (PMID:18579752) RGD PMID:18579752 NCBI chr  X:12,566,447...12,628,171
Ensembl chr  X:12,566,645...12,747,882 		JBrowse link
G Ssna1 SS nuclear autoantigen 1 acts_upstream_of_or_within ISO (PMID:21289087) RGD PMID:21289087 NCBI chr 3:8,084,949...8,086,417
Ensembl chr 3:8,084,974...8,086,356 		JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:92,073,622...92,110,427
Ensembl chr 9:92,073,640...92,108,977 		JBrowse link
G Tub TUB bipartite transcription factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:28154160)
GO_REF:0000107		 RGD
Ensembl		 PMID:28154160 GO_REF:0000107 NCBI chr 1:163,008,198...163,030,958
Ensembl chr 1:162,951,931...163,026,812 		JBrowse link
G Wdr35 WD repeat domain 35 involved_in ISO (PMID:29220510) RGD PMID:29220510 NCBI chr 6:31,771,315...31,831,450
Ensembl chr 6:31,771,360...31,831,029 		JBrowse link
intraciliary anterograde transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc38 coiled-coil domain containing 38 acts_upstream_of ISO MGI:7287391 (PMID:35587122) RGD PMID:35587122 NCBI chr 7:28,055,883...28,129,938
Ensembl chr 7:28,059,798...28,130,441 		JBrowse link
G Cilk1 ciliogenesis associated kinase 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:25243405)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:25243405 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:78,984,075...79,042,695
Ensembl chr 8:78,984,258...79,042,691 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (PMID:21209331) RGD PMID:21209331 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Ift52 intraflagellar transport 52 involved_in ISO (PMID:27466190) RGD PMID:27466190 NCBI chr 3:151,672,505...151,696,975
Ensembl chr 3:151,672,493...151,696,980 		JBrowse link
G Ift56 intraflagellar transport 56 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:67,090,622...67,154,707
Ensembl chr 4:67,090,660...67,147,903 		JBrowse link
intraciliary retrograde transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cilk1 ciliogenesis associated kinase 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:25243405)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:25243405 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:78,984,075...79,042,695
Ensembl chr 8:78,984,258...79,042,691 		JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 GO_REF:0000107
MGI:4359237 (PMID:18488998)
GO_REF:0000033		 Ensembl
RGD
GO_Central		 PMID:18488998 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:4,189,067...4,412,183
Ensembl chr 8:4,189,257...4,412,183 		JBrowse link
G Dync2i1 dynein 2 intermediate chain 1 involved_in ISO (PMID:29742051), (PMID:30649997) RGD PMID:29742051 PMID:30649997 NCBI chr 6:137,133,418...137,189,937
Ensembl chr 6:137,133,418...137,188,719 		JBrowse link
G Dync2i2 dynein 2 intermediate chain 2 involved_in ISO (PMID:29742051), (PMID:30649997)
(PMID:28379358)		 RGD PMID:28379358 PMID:29742051 PMID:30649997 NCBI chr 3:13,306,039...13,322,121
Ensembl chr 3:13,306,039...13,322,121 		JBrowse link
G Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 6:9,992,537...10,025,355
Ensembl chr 6:9,992,541...10,025,336 		JBrowse link
G Dynll1 dynein light chain LC8-type 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:4368846 (PMID:25294941)		 GO_Central
RGD		 PMID:25294941 GO_REF:0000033 NCBI chr12:41,312,365...41,316,157
Ensembl chr12:41,312,367...41,314,741 		JBrowse link
G Dynll1l dynein light chain LC8-type 1 like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:1,492,788...1,493,464
Ensembl chr10:1,492,893...1,493,171 		JBrowse link
G Dynll1l2 dynein light chain LC8-type 1 like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:80,321,783...80,322,046
Ensembl chr 8:80,321,777...80,322,094
Ensembl chr 8:80,321,777...80,322,094 		JBrowse link
G Dynlt2b dynein light chain Tctex-type 2B involved_in ISO (PMID:29742051) RGD PMID:29742051 NCBI chr11:68,359,138...68,367,573
Ensembl chr11:68,358,263...68,367,499 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in IBA
ISO		 GO_REF:0000033
(PMID:21209331)		 GO_Central
RGD		 PMID:21209331 GO_REF:0000033 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Ift140 intraflagellar transport 140 involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:22503633)
MGI:4458412 (PMID:24009529)
GO_REF:0000033		 RGD
GO_Central		 PMID:22503633 PMID:24009529 GO_REF:0000033 NCBI chr10:14,032,665...14,121,682
Ensembl chr10:14,032,648...14,120,433 		JBrowse link
G Ift43 intraflagellar transport 43 involved_in ISO
IBA		 (PMID:21378380)
GO_REF:0000033		 RGD
GO_Central		 PMID:21378380 GO_REF:0000033 NCBI chr 6:105,729,734...105,806,257
Ensembl chr 6:105,729,792...105,806,257 		JBrowse link
G Ttc21a tetratricopeptide repeat domain 21A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:119,667,044...119,702,028
Ensembl chr 8:119,666,933...119,702,456 		JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:2152544|MGI:2669525|MGI:5587034 (PMID:18327258), (PMID:19732765), (PMID:27482817)		 GO_Central
RGD		 PMID:18327258 PMID:19732765 PMID:27482817 GO_REF:0000033 NCBI chr 3:50,861,367...50,935,880
Ensembl chr 3:50,861,367...50,935,903 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within
involved_in		 ISO
IBA		 (PMID:20889716)
GO_REF:0000033		 RGD
GO_Central		 PMID:20889716 GO_REF:0000033 NCBI chr14:43,042,474...43,106,337
Ensembl chr14:43,042,478...43,106,288 		JBrowse link
G Wdr35 WD repeat domain 35 acts_upstream_of_or_within
involved_in		 ISO
IBA
IEA		 (PMID:20889716)
GO_REF:0000033
GO_REF:0000104		 RGD
GO_Central
UniProt		 PMID:20889716 GO_REF:0000033 GO_REF:0000104 NCBI chr 6:31,771,315...31,831,450
Ensembl chr 6:31,771,360...31,831,029 		JBrowse link
intraciliary transport involved in cilium assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cep131 centrosomal protein 131 involved_in ISO (PMID:24550735) RGD PMID:24550735 NCBI chr10:105,346,015...105,370,380
Ensembl chr10:105,346,015...105,370,380 		JBrowse link
G Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 involved_in ISO
IBA
IEA
ISS		 (PMID:26077881)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000002
GO_REF:0000024		 RGD
GO_Central
Ensembl
InterPro
UniProt		 PMID:26077881 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:9,992,537...10,025,355
Ensembl chr 6:9,992,541...10,025,336 		JBrowse link
G Ift56 intraflagellar transport 56 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:67,090,622...67,154,707
Ensembl chr 4:67,090,660...67,147,903 		JBrowse link
G Ift74 intraflagellar transport 74 involved_in ISO
IBA		 (PMID:23990561)
GO_REF:0000033		 RGD
GO_Central		 PMID:23990561 GO_REF:0000033 NCBI chr 5:109,460,372...109,563,839
Ensembl chr 5:109,474,255...109,563,833 		JBrowse link
G Ift81 intraflagellar transport 81 involved_in ISS
ISO		 GO_REF:0000024
(PMID:23990561)		 UniProt
RGD		 PMID:23990561 GO_REF:0000024 NCBI chr12:33,957,744...34,037,164
Ensembl chr12:33,957,806...34,037,057 		JBrowse link
G Pcm1 pericentriolar material 1 involved_in ISO (PMID:24550735) RGD PMID:24550735 NCBI chr16:51,008,315...51,105,261
Ensembl chr16:51,008,315...51,105,091 		JBrowse link
G Ssx2ip SSX family member 2 interacting protein involved_in ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000107
(PMID:24356449)		 UniProt
GO_Central
Ensembl
RGD		 PMID:24356449 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:235,298,012...235,330,750
Ensembl chr 2:235,298,088...235,330,745 		JBrowse link
regulation of intraciliary retrograde transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dynlt2b dynein light chain Tctex-type 2B involved_in ISO (PMID:26044572) RGD PMID:26044572 NCBI chr11:68,359,138...68,367,573
Ensembl chr11:68,358,263...68,367,499 		JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B involved_in ISO (PMID:27932497) RGD PMID:27932497 NCBI chr 3:50,861,367...50,935,880
Ensembl chr 3:50,861,367...50,935,903 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    localization 5703
      protein-containing complex localization 280
        intraciliary transport 46
          intraciliary anterograde transport + 5
          intraciliary retrograde transport + 16
          intraciliary transport involved in cilium assembly 7
Path 2
Term Annotations click to browse term
  biological_process 20536
    cellular process 19526
      cellular localization 3677
        establishment of localization in cell 2139
          intracellular transport 1392
            cytoskeleton-dependent intracellular transport 207
              transport along microtubule 186
                intraciliary transport 46
                  intraciliary anterograde transport + 5
                  intraciliary retrograde transport + 16
                  intraciliary transport involved in cilium assembly 7
paths to the root