ONTOLOGY REPORT - ANNOTATIONS
Term: endodermal cell differentiation
Accession: GO:0035987
browse the term
Definition: The process in which a relatively unspecialized cell acquires the specialized features of an endoderm cell, a cell of the inner of the three germ layers of the embryo.
Synonyms: exact_synonym: endoderm cell differentiation
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Brd3
bromodomain containing 3
involved_in
ISO
(PMID:32895492)
RGD
PMID:32895492
NCBI chr 3:10,773,163...10,829,675
Ensembl chr 3:10,775,272...10,829,577
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Col11a1
collagen type XI alpha 1 chain
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr 2:201,820,715...202,013,853
Ensembl chr 2:201,820,715...202,013,853
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Col12a1
collagen type XII alpha 1 chain
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr 8:80,547,592...80,665,665
Ensembl chr 8:80,547,593...80,665,686
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Col4a2
collagen type IV alpha 2 chain
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr16:78,047,591...78,183,360
Ensembl chr16:78,047,602...78,183,839
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Col6a1
collagen type VI alpha 1 chain
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr20:11,906,105...11,924,599
Ensembl chr20:11,905,957...11,924,597
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Col7a1
collagen type VII alpha 1 chain
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr 8:109,604,877...109,637,249
Ensembl chr 8:109,604,861...109,637,252
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Col8a1
collagen type VIII alpha 1 chain
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr11:42,776,851...42,906,432
Ensembl chr11:42,777,628...42,906,424
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Fn1
fibronectin 1
involved_in
ISO IEA
(PMID:23154389) GO_REF:0000107
RGD Ensembl
PMID:23154389
GO_REF:0000107
NCBI chr 9:73,196,044...73,264,695
Ensembl chr 9:73,196,044...73,264,678
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Gata6
GATA binding protein 6
acts_upstream_of_or_within
ISO
MGI:2177785 (PMID:9832509)
RGD
PMID:9832509
NCBI chr18:2,188,121...2,219,532
Ensembl chr18:2,188,121...2,219,532
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Grb2
growth factor receptor bound protein 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:16908534)
Ensembl RGD
PMID:16908534
GO_REF:0000107
NCBI chr10:100,881,404...100,949,193
Ensembl chr10:100,869,718...100,949,309
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Hmga2
high mobility group AT-hook 2
involved_in
ISO ISS
(PMID:17624332) GO_REF:0000024
RGD UniProt
PMID:17624332
GO_REF:0000024
NCBI chr 7:55,877,145...55,998,813
Ensembl chr 7:55,880,112...55,994,784
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Hsbp1
heat shock factor binding protein 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:24380799)
Ensembl RGD
PMID:24380799
GO_REF:0000107
NCBI chr19:47,401,039...47,405,373
Ensembl chr19:47,400,966...47,435,821
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Inhba
inhibin subunit beta A
involved_in
ISO
(PMID:21828274)
RGD
PMID:21828274
NCBI chr17:49,091,635...49,111,573
Ensembl chr17:49,095,920...49,108,982
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Itga4
integrin subunit alpha 4
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr 3:64,162,764...64,235,010
Ensembl chr 3:64,163,085...64,233,715
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Itga5
integrin subunit alpha 5
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr 7:134,478,963...134,502,837
Ensembl chr 7:134,478,968...134,502,837
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Itga7
integrin subunit alpha 7
involved_in
ISO IEA
(PMID:23154389) GO_REF:0000107
RGD Ensembl
PMID:23154389
GO_REF:0000107
NCBI chr 7:1,360,125...1,388,886
Ensembl chr 7:1,359,940...1,388,450
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Itgav
integrin subunit alpha V
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr 3:68,838,514...68,926,653
Ensembl chr 3:68,838,189...68,926,639
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Itgb2
integrin subunit beta 2
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr20:11,061,394...11,097,656
Ensembl chr20:11,061,430...11,097,600
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Itgb5
integrin subunit beta 5
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr11:66,828,428...66,944,231
Ensembl chr11:66,829,285...66,944,472
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Lama3
laminin subunit alpha 3
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr18:3,523,168...3,751,722
Ensembl chr18:3,523,133...3,751,353
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Lamb1
laminin subunit beta 1
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr 6:47,835,492...47,902,585
Ensembl chr 6:47,835,525...47,902,585
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Lamb3
laminin subunit beta 3
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr13:104,833,810...104,875,405
Ensembl chr13:104,833,873...104,875,405
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Map2k1
mitogen activated protein kinase kinase 1
involved_in acts_upstream_of
IEA ISO
GO_REF:0000107 (PMID:16908534)
Ensembl RGD
PMID:16908534
GO_REF:0000107
NCBI chr 8:64,683,449...64,754,900
Ensembl chr 8:64,683,449...64,755,147
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Mixl1
Mix paired-like homeobox 1
involved_in
ISO
(PMID:19038793)
RGD
PMID:19038793
NCBI chr13:92,422,031...92,426,065
Ensembl chr13:92,422,031...92,426,065
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Mmp14
matrix metallopeptidase 14
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr15:27,887,795...27,897,020
Ensembl chr15:27,887,727...27,899,864
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Mmp15
matrix metallopeptidase 15
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr19:9,663,449...9,684,943
Ensembl chr19:9,663,449...9,684,943
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Mmp2
matrix metallopeptidase 2
involved_in
ISO IEA
(PMID:23154389) GO_REF:0000107
RGD Ensembl
PMID:23154389
GO_REF:0000107
NCBI chr19:14,154,657...14,182,870
Ensembl chr19:14,154,657...14,182,870
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Mmp8
matrix metallopeptidase 8
involved_in
IEA ISO
GO_REF:0000107 (PMID:23154389)
Ensembl RGD
PMID:23154389
GO_REF:0000107
NCBI chr 8:4,724,009...4,733,864
Ensembl chr 8:4,724,029...4,733,520
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Mmp9
matrix metallopeptidase 9
involved_in
IEA ISO
GO_REF:0000107 (PMID:23154389)
Ensembl RGD
PMID:23154389
GO_REF:0000107
NCBI chr 3:153,684,158...153,692,118
Ensembl chr 3:153,683,858...153,692,120
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Myh9
myosin, heavy chain 9
involved_in
IEA ISO
GO_REF:0000107 MGI:3522434 (PMID:15292239)
Ensembl RGD
PMID:15292239
GO_REF:0000107
NCBI chr 7:109,343,718...109,424,457
Ensembl chr 7:109,343,706...109,424,457
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Nodal
nodal growth differentiation factor
involved_in
ISO
(PMID:21741376)
RGD
PMID:21741376
NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837
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Nr0b1
nuclear receptor subfamily 0, group B, member 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:16466956)
Ensembl RGD
PMID:16466956
GO_REF:0000107
NCBI chr X:50,756,886...50,761,014
Ensembl chr X:50,756,886...50,761,011
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Setd2
SET domain containing 2, histone lysine methyltransferase
involved_in
ISO
(PMID:25242323)
RGD
PMID:25242323
NCBI chr 8:110,511,808...110,597,475
Ensembl chr 8:110,511,772...110,597,489
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Sox17
SRY-box transcription factor 17
acts_upstream_of
ISO
(PMID:17940068)
RGD
PMID:17940068
NCBI chr 5:15,016,660...15,022,228
Ensembl chr 5:15,016,731...15,022,228
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Vtn
vitronectin
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr10:63,394,732...63,397,812
Ensembl chr10:63,394,719...63,397,810
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Cdc73
cell division cycle 73
involved_in
IEA ISO ISS
GO_REF:0000107 (PMID:19345177) GO_REF:0000024
Ensembl RGD UniProt
PMID:19345177
GO_REF:0000024 GO_REF:0000107
NCBI chr13:55,357,226...55,449,690
Ensembl chr13:55,357,226...55,449,656
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Ctnnb1
catenin beta 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1858007|MGI:2148567 (PMID:12194849)
Ensembl RGD
PMID:12194849
GO_REF:0000107
NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
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Ctr9
CTR9 homolog, Paf1/RNA polymerase II complex component
involved_in
ISO
(PMID:19345177)
RGD
PMID:19345177
NCBI chr 1:165,137,277...165,167,303
Ensembl chr 1:165,137,215...165,167,303
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Leo1
LEO1 homolog, Paf1/RNA polymerase II complex component
involved_in
ISS ISO
GO_REF:0000024 (PMID:19345177)
UniProt RGD
PMID:19345177
GO_REF:0000024
NCBI chr 8:76,199,547...76,223,983
Ensembl chr 8:76,199,099...76,223,983
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Paf1
PAF1 homolog, Paf1/RNA polymerase II complex component
involved_in
ISS ISO
GO_REF:0000024 (PMID:19345177)
UniProt RGD
PMID:19345177
GO_REF:0000024
NCBI chr 1:83,683,654...83,689,233
Ensembl chr 1:83,668,813...83,689,237
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Pou5f1
POU class 5 homeobox 1
acts_upstream_of_or_within
ISO
(PMID:10742100)
RGD
PMID:10742100
NCBI chr20:3,227,836...3,232,598
Ensembl chr20:3,223,129...3,227,891
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Rtf1
Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
involved_in
ISO
(PMID:19345177)
RGD
PMID:19345177
NCBI chr 3:106,659,363...106,718,956
Ensembl chr 3:106,659,308...106,718,970
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Gata6
GATA binding protein 6
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:20308546)
Ensembl RGD
PMID:20308546
GO_REF:0000107
NCBI chr18:2,188,121...2,219,532
Ensembl chr18:2,188,121...2,219,532
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Sox17
SRY-box transcription factor 17
acts_upstream_of_or_within
ISO
(PMID:20308546)
RGD
PMID:20308546
NCBI chr 5:15,016,660...15,022,228
Ensembl chr 5:15,016,731...15,022,228
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Eomes
eomesodermin
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:3774028 (PMID:21245162)
GO_Central RGD
PMID:21245162
GO_REF:0000033
NCBI chr 8:118,181,340...118,189,186
Ensembl chr 8:118,181,777...118,188,316
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Hnf1b
HNF1 homeobox B
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857856 (PMID:18635606)
Ensembl RGD
PMID:18635606
GO_REF:0000107
NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888
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Nanog
Nanog homeobox
acts_upstream_of_or_within
ISO
(PMID:20713518)
RGD
PMID:20713518
NCBI chr 4:155,943,737...155,951,116
Ensembl chr 4:155,943,737...155,951,116
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Pou5f1
POU class 5 homeobox 1
acts_upstream_of_or_within
ISO
(PMID:20713518)
RGD
PMID:20713518
NCBI chr20:3,227,836...3,232,598
Ensembl chr20:3,223,129...3,227,891
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Sox17
SRY-box transcription factor 17
involved_in
ISO
(PMID:21305474)
RGD
PMID:21305474
NCBI chr 5:15,016,660...15,022,228
Ensembl chr 5:15,016,731...15,022,228
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Sox2
SRY-box transcription factor 2
acts_upstream_of_or_within
ISO
(PMID:21245162)
RGD
PMID:21245162
NCBI chr 2:117,536,929...117,539,340
Ensembl chr 2:117,536,929...117,539,338
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Col5a1
collagen type V alpha 1 chain
involved_in
ISO IEA
(PMID:23154389) GO_REF:0000107
RGD Ensembl
PMID:23154389
GO_REF:0000107
NCBI chr 3:11,208,429...11,356,715
Ensembl chr 3:11,208,512...11,354,588
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Col5a2
collagen type V alpha 2 chain
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr 9:47,448,741...47,598,134
Ensembl chr 9:47,448,736...47,598,154
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Mesp1
mesoderm posterior bHLH transcription factor 1
involved_in
ISO
(PMID:18593560)
RGD
PMID:18593560
NCBI chr 1:133,738,357...133,739,875
Ensembl chr 1:133,738,357...133,739,875
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Macroh2a1
macroH2A.1 histone
involved_in
ISO
(PMID:23595991)
RGD
PMID:23595991
NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072
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Map2k1
mitogen activated protein kinase kinase 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:16908534)
Ensembl RGD
PMID:16908534
GO_REF:0000107
NCBI chr 8:64,683,449...64,754,900
Ensembl chr 8:64,683,449...64,755,147
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Sox17
SRY-box transcription factor 17
acts_upstream_of_or_within
ISO
(PMID:17940068)
RGD
PMID:17940068
NCBI chr 5:15,016,660...15,022,228
Ensembl chr 5:15,016,731...15,022,228
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Dkk1
dickkopf WNT signaling pathway inhibitor 1
involved_in
ISO
(PMID:20559569)
RGD
PMID:20559569
NCBI chr 1:228,381,521...228,385,202
Ensembl chr 1:228,381,521...228,385,202
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