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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of lysosomal lumen pH
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Accession:GO:0035751 term browser browse the term
Definition:Any process that modulates the pH of the lysosomal lumen, measured by the concentration of the hydrogen ion.


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regulation of lysosomal lumen pH term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRRK2 leucine rich repeat kinase 2 involved_in IMP (PMID:22012985) ParkinsonsUK-UCL PMID:22012985 NCBI chr12:40,224,997...40,369,285
Ensembl chr12:40,196,744...40,369,285 		JBrowse link
G SPNS1 SPNS lysolipid transporter 1, lysophospholipid acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:28,974,778...28,984,765
Ensembl chr16:28,974,221...28,984,548 		JBrowse link
G TASL TLR adaptor interacting with endolysosomal SLC15A4 involved_in IDA
IBA		 (PMID:31001245) UniProt
GO_Central		 PMID:31001245 GO_REF:0000033 NCBI chr  X:30,558,809...30,577,766
Ensembl chr  X:30,558,809...30,577,766 		JBrowse link
G TMEM165 transmembrane protein 165 involved_in IMP (PMID:23569283) UniProt PMID:23569283 NCBI chr 4:55,395,957...55,453,397
Ensembl chr 4:55,395,957...55,453,397 		JBrowse link
G TMEM175 transmembrane protein 175 involved_in IEA
IDA		 (PMID:35750034) Ensembl
UniProt		 PMID:35750034 GO_REF:0000107 NCBI chr 4:932,460...958,656
Ensembl chr 4:932,387...958,656 		JBrowse link
G VPS33A VPS33A core subunit of CORVET and HOPS complexes involved_in IMP (PMID:28013294) UniProt PMID:28013294 NCBI chr12:122,229,564...122,266,494
Ensembl chr12:122,229,564...122,266,502 		JBrowse link
lysosomal lumen acidification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP6AP1 ATPase H+ transporting accessory protein 1 involved_in NAS (PMID:32001091), (PMID:33065002) ComplexPortal PMID:32001091 PMID:33065002 NCBI chr  X:154,428,677...154,436,516
Ensembl chr  X:154,428,633...154,436,516 		JBrowse link
G ATP6AP2 ATPase H+ transporting accessory protein 2 involved_in IMP
NAS		 (PMID:32276428)
(PMID:32001091), (PMID:33065002)		 UniProt
ComplexPortal		 PMID:32001091 PMID:32276428 PMID:33065002 NCBI chr  X:40,580,970...40,606,848
Ensembl chr  X:40,579,372...40,606,848 		JBrowse link
G ATP6V0A1 ATPase H+ transporting V0 subunit a1 involved_in NAS (PMID:33065002) ComplexPortal PMID:33065002 NCBI chr17:42,458,878...42,522,579
Ensembl chr17:42,458,844...42,522,582 		JBrowse link
G ATP6V0B ATPase H+ transporting V0 subunit b involved_in NAS (PMID:32001091), (PMID:33065002) ComplexPortal PMID:32001091 PMID:33065002 NCBI chr 1:43,974,960...43,978,295
Ensembl chr 1:43,974,487...43,978,295 		JBrowse link
G ATP6V0C ATPase H+ transporting V0 subunit c involved_in NAS (PMID:32001091), (PMID:33065002) ComplexPortal PMID:32001091 PMID:33065002 NCBI chr16:2,513,726...2,520,218
Ensembl chr16:2,513,952...2,520,218 		JBrowse link
G ATP6V1A ATPase H+ transporting V1 subunit A involved_in NAS
IC		 (PMID:32001091), (PMID:33065002) ComplexPortal
UniProt		 PMID:32001091 PMID:33065002 NCBI chr 3:113,747,035...113,812,056
Ensembl chr 3:113,746,770...113,812,056 		JBrowse link
G ATP6V1D ATPase H+ transporting V1 subunit D involved_in NAS (PMID:32001091), (PMID:33065002) ComplexPortal PMID:32001091 PMID:33065002 NCBI chr14:67,337,872...67,359,804
Ensembl chr14:67,294,371...67,360,265 		JBrowse link
G ATP6V1F ATPase H+ transporting V1 subunit F involved_in NAS (PMID:32001091), (PMID:33065002) ComplexPortal PMID:32001091 PMID:33065002 NCBI chr 7:128,862,856...128,865,847
Ensembl chr 7:128,862,856...128,865,847 		JBrowse link
G ATP6V1H ATPase H+ transporting V1 subunit H involved_in NAS (PMID:32001091), (PMID:33065002) ComplexPortal PMID:32001091 PMID:33065002 NCBI chr 8:53,715,543...53,843,245
Ensembl chr 8:53,715,543...53,843,558 		JBrowse link
G CCDC115 coiled-coil domain containing 115 involved_in IMP (PMID:28296633) UniProt PMID:28296633 NCBI chr 2:130,337,933...130,342,681
Ensembl chr 2:130,337,933...130,342,699 		JBrowse link
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IMP
IBA		 (PMID:11722572) UniProt
GO_Central		 PMID:11722572 GO_REF:0000033 NCBI chr16:28,466,653...28,492,082
Ensembl chr16:28,474,111...28,495,575 		JBrowse link
G CLN5 CLN5 intracellular trafficking protein involved_in IMP (PMID:11722572) UniProt PMID:11722572 NCBI chr13:76,992,081...77,005,117
Ensembl chr13:76,990,660...77,019,143 		JBrowse link
G CLN6 CLN6 transmembrane ER protein involved_in IMP (PMID:11722572) UniProt PMID:11722572 NCBI chr15:68,206,992...68,257,211
Ensembl chr15:68,206,992...68,257,211 		JBrowse link
G CREG1 cellular repressor of E1A stimulated genes 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:167,541,013...167,553,762
Ensembl chr 1:167,529,117...167,553,805 		JBrowse link
G GRN granulin precursor involved_in IMP (PMID:28073925) UniProt PMID:28073925 NCBI chr17:44,345,302...44,353,106
Ensembl chr17:44,345,246...44,353,106 		JBrowse link
G LAMP1 lysosomal associated membrane protein 1 involved_in IDA (PMID:37390818) UniProt PMID:37390818 NCBI chr13:113,297,239...113,323,672
Ensembl chr13:113,297,239...113,323,672 		JBrowse link
G LAMP2 lysosomal associated membrane protein 2 involved_in IDA (PMID:37390818) UniProt PMID:37390818 NCBI chr  X:120,426,148...120,469,349
Ensembl chr  X:120,426,148...120,469,365 		JBrowse link
G PPT1 palmitoyl-protein thioesterase 1 involved_in IMP (PMID:11722572) UniProt PMID:11722572 NCBI chr 1:40,071,461...40,097,252
Ensembl chr 1:40,072,710...40,097,260 		JBrowse link
G RNASEK ribonuclease K involved_in NAS (PMID:32001091), (PMID:33065002) ComplexPortal PMID:32001091 PMID:33065002 NCBI chr17:7,012,624...7,014,532
Ensembl chr17:7,012,417...7,014,532 		JBrowse link
G SNAPIN SNAP associated protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:153,658,654...153,661,852
Ensembl chr 1:153,658,703...153,661,852 		JBrowse link
G TCIRG1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 involved_in NAS (PMID:32001091) ComplexPortal PMID:32001091 NCBI chr11:68,039,025...68,053,762
Ensembl chr11:68,039,025...68,050,895 		JBrowse link
G TMEM106B transmembrane protein 106B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:12,211,294...12,243,367
Ensembl chr 7:12,211,270...12,243,367 		JBrowse link
G TMEM199 transmembrane protein 199 involved_in IMP (PMID:28296633) UniProt PMID:28296633 NCBI chr17:28,357,647...28,363,683
Ensembl chr17:28,357,642...28,363,683 		JBrowse link
G TMEM9 transmembrane protein 9 involved_in IDA (PMID:30374053) UniProt PMID:30374053 NCBI chr 1:201,134,772...201,171,558
Ensembl chr 1:201,134,772...201,171,574 		JBrowse link
lysosomal lumen pH elevation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IDA (PMID:10924275) UniProt PMID:10924275 NCBI chr16:28,466,653...28,492,082
Ensembl chr16:28,474,111...28,495,575 		JBrowse link
G OCA2 OCA2 melanosomal transmembrane protein involved_in IDA (PMID:25513726), (PMID:32966160) UniProt PMID:25513726 PMID:32966160 NCBI chr15:27,719,008...28,099,315
Ensembl chr15:27,754,875...28,099,315 		JBrowse link
G SLC45A2 solute carrier family 45 member 2 involved_in ISS
IDA
IEA		 (PMID:32966160) UniProt
Ensembl		 PMID:32966160 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:33,944,623...33,984,693
Ensembl chr 5:33,944,623...33,984,693 		JBrowse link
G TMEM175 transmembrane protein 175 involved_in IDA (PMID:35333573), (PMID:35750034), (PMID:37390818) UniProt PMID:35333573 PMID:35750034 PMID:37390818 NCBI chr 4:932,460...958,656
Ensembl chr 4:932,387...958,656 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 27142
    biological regulation 13699
      regulation of biological quality 3694
        regulation of intracellular pH 94
          regulation of lysosomal lumen pH 32
            lysosomal lumen acidification 24
            lysosomal lumen pH elevation 4
Path 2
Term Annotations click to browse term
  biological_process 27142
    cellular process 19785
      cellular component organization or biogenesis 7754
        cellular component organization 7522
          organelle organization 3892
            vacuole organization 255
              lytic vacuole organization 118
                lysosome organization 118
                  regulation of lysosomal lumen pH 32
                    lysosomal lumen acidification 24
                    lysosomal lumen pH elevation 4
paths to the root