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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of lysosomal lumen pH
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Accession:GO:0035751 term browser browse the term
Definition:Any process that modulates the pH of the lysosomal lumen, measured by the concentration of the hydrogen ion.

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regulation of lysosomal lumen pH term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC103246503 endosomal/lysosomal potassium channel TMEM175 involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:47,819,512...47,852,455
Ensembl chr27:47,816,482...47,852,472 		JBrowse link
G LRRK2 leucine rich repeat kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:36,490,775...36,634,215
Ensembl chr11:36,492,011...36,634,216 		JBrowse link
G SPNS1 SPNS lysolipid transporter 1, lysophospholipid acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:26,085,461...26,095,585
Ensembl chr 5:26,085,918...26,095,309 		JBrowse link
G TASL TLR adaptor interacting with endolysosomal SLC15A4 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:28,953,805...28,973,055
Ensembl chr  X:28,954,266...28,955,171 		JBrowse link
G TMEM165 transmembrane protein 165 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:13,136,414...13,167,521
Ensembl chr 7:13,135,845...13,167,499 		JBrowse link
G VPS33A VPS33A core subunit of CORVET and HOPS complexes involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:117,585,325...117,618,713
Ensembl chr11:117,582,781...117,615,743 		JBrowse link
lysosomal lumen acidification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP6AP2 ATPase H+ transporting accessory protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:37,742,550...37,769,022
Ensembl chr  X:37,742,545...37,769,062 		JBrowse link
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:26,320,132...26,343,009
Ensembl chr 5:26,320,061...26,337,402 		JBrowse link
G CLN5 CLN5 intracellular trafficking protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:56,074,701...56,086,433
Ensembl chr 3:56,076,226...56,086,963 		JBrowse link
G CLN6 CLN6 transmembrane ER protein involved_in ISO (PMID:11722572) UniProt PMID:11722572 NCBI chr26:15,259,186...15,278,249 JBrowse link
G CLN6 CLN6 transmembrane ER protein involved_in IEA Ensembl GO_REF:0000107 Ensembl chr26:15,266,732...15,278,418 JBrowse link
G CREG1 cellular repressor of E1A stimulated genes 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr25:61,472,601...61,485,568
Ensembl chr25:61,472,617...61,488,999 		JBrowse link
G GRN granulin precursor involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:62,037,344...62,045,765
Ensembl chr16:62,036,412...62,045,614 		JBrowse link
G LAMP1 lysosomal associated membrane protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:91,295,758...91,319,881
Ensembl chr 3:91,295,681...91,321,333 		JBrowse link
G LAMP2 lysosomal associated membrane protein 2 involved_in IEA Ensembl GO_REF:0000107
G PPT1 palmitoyl-protein thioesterase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:92,809,373...92,833,048
Ensembl chr20:92,809,552...92,833,244 		JBrowse link
G SNAPIN SNAP associated protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:10,147,577...10,150,721
Ensembl chr20:10,148,099...10,150,641 		JBrowse link
G TMEM106B transmembrane protein 106B acts_upstream_of_or_within ISO (PMID:28728022) MGI PMID:28728022 NCBI chr21:45,899,428...45,921,500
Ensembl chr21:45,900,531...45,920,569 		JBrowse link
G TMEM9 transmembrane protein 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:28,230,915...28,266,835
Ensembl chr25:28,246,845...28,267,421 		JBrowse link
G VMA12 vacuolar ATPase assembly factor VMA12 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr16:22,124,413...22,130,922 JBrowse link
G VMA22 vacuolar ATPase assembly factor VMA22 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:66,264...70,711
Ensembl chr10:66,429...70,877 		JBrowse link
lysosomal lumen pH elevation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:26,320,132...26,343,009
Ensembl chr 5:26,320,061...26,337,402 		JBrowse link
G LOC103246503 endosomal/lysosomal potassium channel TMEM175 involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:47,819,512...47,852,455
Ensembl chr27:47,816,482...47,852,472 		JBrowse link
G OCA2 OCA2 melanosomal transmembrane protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:54,022,346...54,429,991
Ensembl chr26:54,039,197...54,352,774 		JBrowse link
G SLC45A2 solute carrier family 45 member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:33,178,614...33,219,664
Ensembl chr 4:33,179,349...33,219,028 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19829
    biological regulation 12152
      regulation of biological quality 3221
        regulation of intracellular pH 84
          regulation of lysosomal lumen pH 23
            lysosomal lumen acidification 15
            lysosomal lumen pH elevation 4
Path 2
Term Annotations click to browse term
  biological_process 19829
    cellular process 19347
      cellular component organization or biogenesis 8804
        cellular component organization 8578
          organelle organization 3642
            vacuole organization 226
              lytic vacuole organization 100
                lysosome organization 100
                  regulation of lysosomal lumen pH 23
                    lysosomal lumen acidification 15
                    lysosomal lumen pH elevation 4
paths to the root