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ONTOLOGY REPORT - ANNOTATIONS

Term:ectopic germ cell programmed cell death
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Accession:GO:0035234 term browser browse the term
Definition:Programmed cell death of an errant germ line cell that is outside the normal migratory path or ectopic to the gonad. This is an important mechanism of regulating germ cell survival within the embryo.
Synonyms:exact_synonym: programmed cell death of ectopic germ cells;   programmed cell death, ectopic germ cells


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ectopic germ cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO
IEA 		MGI:1857429|MGI:96677|MGI:96974 (PMID:14660547), (PMID:17107997)
MGI:1857429 (PMID:9988273)
GO_REF:0000107 		RGD
Ensembl		 PMID:9988273 PMID:14660547 PMID:17107997 GO_REF:0000107 NCBI chr 1:105,076,472...105,081,906
Ensembl chr 1:95,938,808...95,945,368 		JBrowse link
G Bcl2l1 Bcl2-like 1 acts_upstream_of ISO MGI:2176699 (PMID:10894153) RGD PMID:10894153 NCBI chr 3:161,713,777...161,764,844
Ensembl chr 3:141,253,523...141,303,479
Ensembl chr 1:141,253,523...141,303,479 		JBrowse link
G Casp2 caspase 2 acts_upstream_of_or_within ISO
IEA 		MGI:107700 (PMID:11536012)
GO_REF:0000107 		RGD
Ensembl		 PMID:11536012 GO_REF:0000107 NCBI chr 4:72,116,265...72,134,023
Ensembl chr 4:71,149,669...71,167,379 		JBrowse link
G Casp4 caspase 4 acts_upstream_of_or_within ISO MGI:2159366|MGI:97295 (PMID:11536012) RGD PMID:11536012 NCBI chr 8:10,883,817...10,919,978
Ensembl chr 8:2,598,876...2,635,092 		JBrowse link
G Ddb1 damage-specific DNA binding protein 1 acts_upstream_of ISO MGI:3698413 (PMID:24357321) RGD PMID:24357321 NCBI chr 1:216,677,810...216,703,605
Ensembl chr 1:207,252,890...207,278,676 		JBrowse link
G Il1a interleukin 1 alpha acts_upstream_of_or_within ISO MGI:96543 (PMID:11536012) RGD PMID:11536012 NCBI chr 3:136,979,804...136,990,236
Ensembl chr 3:116,526,604...116,536,822 		JBrowse link
G Il1b interleukin 1 beta acts_upstream_of_or_within ISO
IEA 		MGI:96542 (PMID:11536012)
GO_REF:0000107 		RGD
Ensembl		 PMID:11536012 GO_REF:0000107 NCBI chr 3:137,030,200...137,036,581
Ensembl chr 3:116,577,010...116,583,415 		JBrowse link
G Insl6 insulin-like 6 acts_upstream_of ISO MGI:4431170 (PMID:19520787) RGD PMID:19520787 NCBI chr 1:236,483,530...236,487,065
Ensembl chr 1:227,069,958...227,073,493 		JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase acts_upstream_of
acts_upstream_of_or_within 		ISO
IEA 		MGI:1856232 (PMID:18308723)
MGI:99702 (PMID:14660547)
GO_REF:0000107 		RGD
Ensembl		 PMID:14660547 PMID:18308723 GO_REF:0000107 NCBI chr14:32,901,615...32,978,895
Ensembl chr14:32,548,877...32,624,652 		JBrowse link
G Kitlg KIT ligand acts_upstream_of_or_within ISO
IEA 		MGI:1856161 (PMID:17107997)
GO_REF:0000107 		RGD
Ensembl		 PMID:17107997 GO_REF:0000107 NCBI chr 7:36,782,621...36,863,796
Ensembl chr 7:34,896,053...34,977,214 		JBrowse link
G Lrriq1 leucine-rich repeats and IQ motif containing 1 acts_upstream_of_or_within ISO (PMID:36129630) RGD PMID:36129630 NCBI chr 7:40,211,036...40,296,374
Ensembl chr 7:38,192,759...38,409,901 		JBrowse link
G Mael maelstrom spermatogenic transposon silencer acts_upstream_of ISO MGI:3795667 (PMID:18694567) RGD PMID:18694567 NCBI chr13:80,990,040...81,029,623
Ensembl chr13:78,457,073...78,496,657 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit acts_upstream_of_or_within ISO
IEA 		MGI:2667593 (PMID:17145779)
GO_REF:0000107 		RGD
Ensembl		 PMID:17145779 GO_REF:0000107 NCBI chr11:98,544,952...98,762,499
Ensembl chr11:85,040,792...85,257,952 		JBrowse link
G Sod1 superoxide dismutase 1 acts_upstream_of ISO
IEA 		MGI:1857873 (PMID:16036348)
GO_REF:0000107 		RGD
Ensembl		 PMID:16036348 GO_REF:0000107 NCBI chr11:42,942,742...42,948,399
Ensembl chr11:29,456,558...29,462,249 		JBrowse link
G Syce3 synaptonemal complex central element protein 3 acts_upstream_of ISO
IEA 		(PMID:20407872)
GO_REF:0000107 		RGD
Ensembl		 PMID:20407872 GO_REF:0000107 NCBI chr 7:122,336,427...122,362,608
Ensembl chr 7:120,456,800...120,482,973 		JBrowse link
G Sycp2 synaptonemal complex protein 2 acts_upstream_of ISO
IEA 		MGI:3526164 (PMID:16717126)
GO_REF:0000107 		RGD
Ensembl		 PMID:16717126 GO_REF:0000107 NCBI chr 3:185,814,033...185,876,516
Ensembl chr 3:165,436,331...165,498,789 		JBrowse link
G Tex11 testis expressed 11 acts_upstream_of ISO MGI:3526163 (PMID:18316482) RGD PMID:18316482 NCBI chr  X:69,973,012...70,236,544
Ensembl chr  X:65,932,988...66,196,187 		JBrowse link
G Topaz1 testis and ovary specific TOPAZ 1 acts_upstream_of_or_within ISO
IEA 		MGI:5700076 (PMID:26358182)
GO_REF:0000107 		RGD
Ensembl		 PMID:26358182 GO_REF:0000107 NCBI chr 8:131,235,714...131,290,359
Ensembl chr 8:122,358,243...122,412,875 		JBrowse link
G Ube2b ubiquitin-conjugating enzyme E2B acts_upstream_of ISO MGI:2183933 (PMID:12556476) RGD PMID:12556476 NCBI chr10:36,749,365...36,764,335
Ensembl chr10:36,248,438...36,264,665 		JBrowse link
G Unc5c unc-5 netrin receptor C acts_upstream_of ISO
IEA 		MGI:1857852 (PMID:18077458)
GO_REF:0000107 		RGD
Ensembl		 PMID:18077458 GO_REF:0000107 NCBI chr 2:232,854,352...233,208,482
Ensembl chr 2:230,180,951...230,535,217 		JBrowse link
G Ybx3 Y box binding protein 3 acts_upstream_of ISO MGI:3693011 (PMID:16954378) RGD PMID:16954378 NCBI chr 4:166,861,180...166,884,532
Ensembl chr 4:165,129,758...165,153,161 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    developmental process 7160
      developmental process involved in reproduction 1279
        ectopic germ cell programmed cell death 21
Path 2
Term Annotations click to browse term
  biological_process 20543
    developmental process 7160
      cellular developmental process 4838
        cell differentiation 4837
          cell development 3352
            programmed cell death involved in cell development 32
              ectopic germ cell programmed cell death 21
paths to the root