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ONTOLOGY REPORT - ANNOTATIONS


Term:secretory granule lumen
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Accession:GO:0034774 term browser browse the term
Definition:The volume enclosed by the membrane of a secretory granule.



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secretory granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbh dopamine beta-hydroxylase located_in ISO
ISS
(PMID:7961964)
GO_REF:0000024
RGD
UniProt
PMID:7961964 GO_REF:0000024 NCBI chr 3:30,886,313...30,903,313
Ensembl chr 3:10,488,260...10,505,248
JBrowse link
G Grp gastrin releasing peptide located_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr18:61,658,655...61,672,037
Ensembl chr18:59,388,274...59,402,061
JBrowse link
G Pcsk1 proprotein convertase subtilisin/kexin type 1 located_in TAS Reactome:R-NUL-9023165 Reactome Reactome:R-NUL-9023165 NCBI chr 2:6,130,045...6,176,974
Ensembl chr 2:4,395,543...4,442,434
JBrowse link
G Pcsk2 proprotein convertase subtilisin/kexin type 2 located_in TAS Reactome:R-NUL-9023180 Reactome Reactome:R-NUL-9023180 NCBI chr 3:151,333,938...151,636,628
Ensembl chr 3:130,880,422...131,183,127
JBrowse link
G Serpini1 serpin family I member 1 located_in ISO (PMID:17040209) RGD PMID:17040209 NCBI chr 2:162,645,209...162,731,737
Ensembl chr 2:160,346,758...160,433,135
JBrowse link
acrosomal lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spata31 spermatogenesis associated 31 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr17:243,648...249,434
Ensembl chr17:243,654...249,434
JBrowse link
G Zp3r zona pellucida 3 receptor located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:42,019,998...42,064,836
Ensembl chr13:42,020,018...42,064,812
JBrowse link
azurophil granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prss57 serine protease 57 located_in ISS
ISO
GO_REF:0000024
(PMID:23904161)
UniProt
RGD
PMID:23904161 GO_REF:0000024 NCBI chr 7:9,915,667...9,922,996
Ensembl chr 7:9,917,484...9,922,922
JBrowse link
G Prtn3 proteinase 3 located_in ISO (PMID:18462208) RGD PMID:18462208 NCBI chr 7:10,472,750...10,482,037
Ensembl chr 7:9,822,122...9,831,944
JBrowse link
chromaffin granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbh dopamine beta-hydroxylase located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:30,886,313...30,903,313
Ensembl chr 3:10,488,260...10,505,248
JBrowse link
G Penk proenkephalin located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:21,981,381...21,987,074
Ensembl chr 5:17,183,806...17,189,129
JBrowse link
neuronal dense core vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcyap1 adenylate cyclase activating polypeptide 1 is_active_in IDA PMID:9792613 SynGO PMID:9792613 RGD:2312463 NCBI chr 9:120,550,236...120,569,096
Ensembl chr 9:113,103,718...113,109,773
JBrowse link
G Cck cholecystokinin is_active_in IDA PMID:6084830 SynGO PMID:6084830 RGD:405650225 NCBI chr 8:130,031,012...130,037,702
Ensembl chr 8:121,153,500...121,160,084
JBrowse link
G Crh corticotropin releasing hormone is_active_in IDA PMID:19003957 SynGO PMID:19003957 RGD:405650366 NCBI chr 2:104,059,184...104,061,048
Ensembl chr 2:102,143,055...102,144,919
JBrowse link
G Ghrl ghrelin and obestatin prepropeptide is_active_in ISO (PMID:12597862) RGD PMID:12597862 NCBI chr 4:148,421,315...148,431,128
Ensembl chr 4:146,865,712...146,869,621
JBrowse link
G Hcrt hypocretin neuropeptide precursor is_active_in IDA PMID:9419374 SynGO PMID:9419374 RGD:1298943 NCBI chr10:86,190,289...86,191,524
Ensembl chr10:85,689,465...85,691,210
JBrowse link
G Igf1 insulin-like growth factor 1 is_active_in ISO (PMID:28683263) RGD PMID:28683263 NCBI chr 7:24,169,608...24,249,446
Ensembl chr 7:22,282,930...22,359,296
JBrowse link
G Pdyn prodynorphin is_active_in IDA PMID:7911809 SynGO PMID:7911809 RGD:13702229 NCBI chr 3:137,354,161...137,366,503
Ensembl chr 3:116,900,992...116,913,334
JBrowse link
G Penk proenkephalin is_active_in IDA PMID:8847409 SynGO PMID:8847409 RGD:13702175 NCBI chr 5:21,981,381...21,987,074
Ensembl chr 5:17,183,806...17,189,129
JBrowse link
G Vps13a vacuolar protein sorting 13 homolog A located_in ISO (PMID:22366033) RGD PMID:22366033 NCBI chr 1:223,328,784...223,555,500
Ensembl chr 1:213,901,999...214,128,555
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21322
    cellular anatomical structure 21027
      endomembrane system 4394
        secretory granule 479
          secretory granule lumen 18
            acrosomal lumen 2
            azurophil granule lumen 2
            chromaffin granule lumen 2
            dense core granule lumen + 9
            platelet alpha granule lumen 0
            platelet dense granule lumen 0
            specific granule lumen 0
Path 2
Term Annotations click to browse term
  cellular_component 21322
    cellular anatomical structure 21027
      organelle 14240
        membrane-bounded organelle 12805
          vesicle 2260
            intracellular vesicle 2074
              cytoplasmic vesicle 2065
                secretory vesicle 746
                  secretory granule 479
                    secretory granule lumen 18
                      acrosomal lumen 2
                      azurophil granule lumen 2
                      chromaffin granule lumen 2
                      dense core granule lumen + 9
                      platelet alpha granule lumen 0
                      platelet dense granule lumen 0
                      specific granule lumen 0
paths to the root