Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:SMN-Sm protein complex
go back to main search page
Accession:GO:0034719 term browser browse the term
Definition:A protein complex formed by the association of several methylated Sm proteins with the SMN complex; the latter contains the survival motor neuron (SMN) protein and at least eight additional integral components, including the Gemin2-8 and unrip proteins; additional proteins, including galectin-1 and galectin-3, are also found in the SMN-SM complex. The SMN-Sm complex is involved in spliceosomal snRNP assembly in the cytoplasm.
Comment:Note that this complex is sometimes referred to as the 'SMN complex', but it should not be confused with GO:0032797.
Synonyms:broad_synonym: SMN-containing protein complex


show annotations for term's descendants           Sort by:
SMN-Sm protein complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx20 DEAD-box helicase 20 part_of ISO
IEA 		(PMID:18984161)
GO_REF:0000107 		RGD
Ensembl		 PMID:18984161 GO_REF:0000107 NCBI chr 2:195,847,105...195,859,989
Ensembl chr 2:195,847,105...195,855,461 		JBrowse link
G Gemin2 gem (nuclear organelle) associated protein 2 part_of ISS
ISO
IEA 		GO_REF:0000024
(PMID:18984161)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:18984161 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:82,442,419...82,456,050
Ensembl chr 6:82,442,350...82,456,048 		JBrowse link
G Gemin4 gem (nuclear organelle) associated protein 4 part_of ISO
IEA 		(PMID:18984161)
GO_REF:0000107 		RGD
Ensembl		 PMID:18984161 GO_REF:0000107 NCBI chr10:61,560,172...61,571,765
Ensembl chr10:61,564,657...61,596,532 		JBrowse link
G Gemin5 gem (nuclear organelle) associated protein 5 part_of ISO
IEA 		(PMID:18984161)
GO_REF:0000107 		RGD
Ensembl		 PMID:18984161 GO_REF:0000107 NCBI chr10:42,797,975...42,843,356
Ensembl chr10:42,797,982...42,843,356 		JBrowse link
G Gemin6 gem (nuclear organelle) associated protein 6 part_of ISO
IEA 		(PMID:18984161)
GO_REF:0000107 		RGD
Ensembl		 PMID:18984161 GO_REF:0000107 NCBI chr 6:20,538,325...20,542,867
Ensembl chr 6:20,538,325...20,542,852 		JBrowse link
G Gemin7 gem (nuclear organelle) associated protein 7 part_of ISO
IEA 		(PMID:18984161)
GO_REF:0000002 		RGD
InterPro		 PMID:18984161 GO_REF:0000002 NCBI chr 1:88,343,032...88,352,473
Ensembl chr 1:88,342,361...88,354,571 		JBrowse link
G Gemin7l1 gem (nuclear organelle) associated protein 7-like 1 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:79,600,772...79,601,543
Ensembl chr 4:79,600,772...79,601,543 		JBrowse link
G Gemin8 gem (nuclear organelle) associated protein 8 part_of ISO (PMID:18984161) RGD PMID:18984161 NCBI chr  X:31,891,446...31,910,280
Ensembl chr  X:31,891,449...31,910,280 		JBrowse link
G LOC120100604 small nuclear ribonucleoprotein G-like part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:189,089,432...189,089,827
Ensembl chr 2:189,089,560...189,089,790 		JBrowse link
G Smn1 survival of motor neuron 1, telomeric part_of ISS
ISO 		GO_REF:0000024
(PMID:18984161) 		UniProt
RGD		 PMID:18984161 GO_REF:0000024 NCBI chr 2:33,224,115...33,235,162
Ensembl chr 2:33,224,095...33,235,162 		JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 part_of ISS
ISO
IEA 		GO_REF:0000024
(PMID:18984161)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:18984161 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:137,824,870...137,832,479
Ensembl chr 3:137,824,683...137,832,515 		JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide part_of ISO
IEA 		(PMID:18984161)
GO_REF:0000107 		RGD
Ensembl		 PMID:18984161 GO_REF:0000107 NCBI chr18:1,969,351...1,980,207
Ensembl chr18:1,969,674...1,980,207 		JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide part_of ISO (PMID:18984161) RGD PMID:18984161 NCBI chr 1:87,926,030...87,929,259
Ensembl chr 1:87,926,048...87,933,339
Ensembl chr20:87,926,048...87,933,339 		JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide part_of ISO
IBA 		(PMID:18984161)
GO_REF:0000033 		RGD
GO_Central		 PMID:18984161 GO_REF:0000033 NCBI chr20:13,129,555...13,145,100
Ensembl chr20:13,109,294...13,145,763 		JBrowse link
G Snrpd3l1 small nuclear ribonucleoprotein D3 polypeptide like 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:12,401,818...12,402,246
Ensembl chr19:12,401,818...12,402,246 		JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E part_of ISO (PMID:18984161) RGD PMID:18984161 NCBI chr13:47,596,324...47,609,390
Ensembl chr 8:129,294,325...129,294,603
Ensembl chr13:129,294,325...129,294,603 		JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F part_of ISO
IEA 		(PMID:18984161)
GO_REF:0000107 		RGD
Ensembl		 PMID:18984161 GO_REF:0000107 NCBI chr 7:30,017,460...30,024,162
Ensembl chr 7:30,017,460...30,024,162 		JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G part_of ISO
IBA 		(PMID:18984161)
GO_REF:0000033 		RGD
GO_Central		 PMID:18984161 GO_REF:0000033 NCBI chr 4:120,369,676...120,377,263
Ensembl chr 4:120,369,685...120,377,261
Ensembl chr  X:120,369,685...120,377,261 		JBrowse link
G Snrpgl1 small nuclear ribonucleoprotein polypeptide G like 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:97,119,542...97,119,969
Ensembl chr 1:97,119,584...97,119,966
Ensembl chr  X:97,119,584...97,119,966 		JBrowse link
G Strap serine/threonine kinase receptor associated protein part_of ISO
ISS
IEA 		(PMID:18984161)
GO_REF:0000024
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:18984161 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:172,377,325...172,391,573
Ensembl chr 4:172,377,305...172,392,436 		JBrowse link
SMN complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx20 DEAD-box helicase 20 part_of ISO
IEA
IBA 		(PMID:17178713), (PMID:18984161)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:17178713 PMID:18984161 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:195,847,105...195,859,989
Ensembl chr 2:195,847,105...195,855,461 		JBrowse link
G ENSRNOG00000068876 part_of IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033
G Fmr1 fragile X messenger ribonucleoprotein 1 located_in ISO
IEA 		(PMID:18093976)
GO_REF:0000107 		RGD
Ensembl		 PMID:18093976 GO_REF:0000107 NCBI chr  X:152,284,857...152,322,686
Ensembl chr  X:152,284,841...152,322,675 		JBrowse link
G Gemin2 gem (nuclear organelle) associated protein 2 part_of ISS
IEA
IBA
ISO 		GO_REF:0000024
GO_REF:0000107
GO_REF:0000033
(PMID:17178713), (PMID:18984161) 		UniProt
Ensembl
GO_Central
RGD		 PMID:17178713 PMID:18984161 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:82,442,419...82,456,050
Ensembl chr 6:82,442,350...82,456,048 		JBrowse link
G Gemin4 gem (nuclear organelle) associated protein 4 part_of ISO
IEA 		(PMID:17178713), (PMID:18984161)
GO_REF:0000107
GO_REF:0000002 		RGD
Ensembl
InterPro		 PMID:17178713 PMID:18984161 GO_REF:0000002 GO_REF:0000107 NCBI chr10:61,560,172...61,571,765
Ensembl chr10:61,564,657...61,596,532 		JBrowse link
G Gemin5 gem (nuclear organelle) associated protein 5 part_of ISO
IEA
IBA 		(PMID:17178713), (PMID:18984161), (PMID:20513430)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:17178713 PMID:18984161 PMID:20513430 GO_REF:0000033 GO_REF:0000107 NCBI chr10:42,797,975...42,843,356
Ensembl chr10:42,797,982...42,843,356 		JBrowse link
G Gemin6 gem (nuclear organelle) associated protein 6 part_of ISO
IEA
IBA 		(PMID:17178713), (PMID:18984161)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:17178713 PMID:18984161 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:20,538,325...20,542,867
Ensembl chr 6:20,538,325...20,542,852 		JBrowse link
G Gemin7 gem (nuclear organelle) associated protein 7 part_of ISO (PMID:17178713), (PMID:18984161) RGD PMID:17178713 PMID:18984161 NCBI chr 1:88,343,032...88,352,473
Ensembl chr 1:88,342,361...88,354,571 		JBrowse link
G Gemin8 gem (nuclear organelle) associated protein 8 part_of ISO
IEA
IBA 		(PMID:16434402), (PMID:17178713), (PMID:18984161)
GO_REF:0000002
GO_REF:0000033 		RGD
InterPro
GO_Central		 PMID:16434402 PMID:17178713 PMID:18984161 GO_REF:0000002 GO_REF:0000033 NCBI chr  X:31,891,446...31,910,280
Ensembl chr  X:31,891,449...31,910,280 		JBrowse link
G Smn1 survival of motor neuron 1, telomeric part_of ISS
IBA
ISO 		GO_REF:0000024
GO_REF:0000033
(PMID:11283611), (PMID:17178713), (PMID:18093976), (PMID:18984161) 		UniProt
GO_Central
RGD		 PMID:11283611 PMID:17178713 PMID:18093976 PMID:18984161 GO_REF:0000024 GO_REF:0000033 NCBI chr 2:33,224,115...33,235,162
Ensembl chr 2:33,224,095...33,235,162 		JBrowse link
G Strap serine/threonine kinase receptor associated protein part_of ISS
IEA
IBA
ISO 		GO_REF:0000024
GO_REF:0000107
GO_REF:0000033
(PMID:17178713), (PMID:18984161) 		UniProt
Ensembl
GO_Central
RGD		 PMID:17178713 PMID:18984161 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:172,377,325...172,391,573
Ensembl chr 4:172,377,305...172,392,436 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19485
    cellular anatomical structure 19353
      cytoplasm 11910
        SMN-Sm protein complex 22
          Lsm-containing SMN-Sm protein complex 0
          SMN complex 11
          SmD-containing SMN-Sm protein complex 0
Path 2
Term Annotations click to browse term
  cellular_component 19485
    cellular anatomical structure 19353
      intracellular anatomical structure 14908
        cytoplasm 11910
          SMN-Sm protein complex 22
            Lsm-containing SMN-Sm protein complex 0
            SMN complex 11
            SmD-containing SMN-Sm protein complex 0
paths to the root