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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleobase-containing small molecule catabolic process
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Accession:GO:0034656 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a nucleobase-containing small molecule: a nucleobase, a nucleoside, or a nucleotide.
Synonyms:exact_synonym: nucleobase, nucleoside and nucleotide breakdown;   nucleobase, nucleoside and nucleotide catabolism;   nucleobase, nucleoside and nucleotide degradation
 xref: Reactome:R-HSA-8956319 "Nucleotide catabolism"



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nucleobase-containing small molecule catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in ISO (PMID:10858452) RGD PMID:10858452 NCBI chr15:51,040,665...51,068,450
Ensembl chr15:44,630,873...44,658,706
JBrowse link
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in ISO (PMID:11278936) RGD PMID:11278936 NCBI chr 1:252,508,594...252,550,269
Ensembl chr 1:242,559,365...242,601,447
JBrowse link
adenosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase involved_in
acts_upstream_of_or_within
ISS
ISO
IBA
IEA
IMP
GO_REF:0000024
(PMID:16742956), (PMID:8064675), (PMID:8672487)
MGI:1857117|MGI:2155977|MGI:2681791|MGI:2683027 (PMID:10720488), (PMID:10899903), (PMID:11591798), (PMID:14607964), (PMID:15630442), (PMID:1618849), (PMID:16841096), (PMID:18340377), (PMID:2015347), (PMID:2387582), (PMID:7592575), (PMID:7670465), (PMID:7731963), (PMID:8663040), (PMID:8894685), (PMID:9272950), (PMID:9478961)
GO_REF:0000033
GO_REF:0000107
(PMID:8894685)
(PMID:16670267)
UniProt
RGD
GO_Central
Ensembl
PMID:1618849 PMID:2015347 PMID:2387582 PMID:7592575 PMID:7670465 More... GO_REF:0000024 GO_REF:0000033 GO_REF:0000107, RGD:152995394 NCBI chr 3:172,818,174...172,842,283
Ensembl chr 3:152,398,747...152,447,088
JBrowse link
G Uox urate oxidase involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:235,486,867...235,523,053
Ensembl chr 2:235,440,619...235,523,029
JBrowse link
G Urad ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase involved_in ISO (PMID:16462750) RGD PMID:16462750 NCBI chr12:7,709,278...7,718,925
Ensembl chr12:7,709,312...7,718,923
JBrowse link
G Xdh xanthine dehydrogenase involved_in IEA
ISO
IDA
GO_REF:0000107
MGI:2448161 (PMID:12502743), (PMID:1590774), (PMID:29895374), (PMID:30936145), (PMID:8226898)
PMID:1619276
Ensembl
RGD
PMID:1590774 PMID:8226898 PMID:12502743 PMID:29895374 PMID:30936145 More... GO_REF:0000107, RGD:127285395 NCBI chr 6:27,282,319...27,344,022
Ensembl chr 6:21,530,113...21,592,268
JBrowse link
cytidine deamination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase involved_in ISO (PMID:12692563) RGD PMID:12692563 NCBI chr 4:157,446,120...157,455,958
Ensembl chr 4:155,774,132...155,783,972
JBrowse link
G Cda cytidine deaminase involved_in IDA
IBA
ISO
GO_REF:0000033
(PMID:9596658)
GO_Central
RGD
PMID:9596658 PMID:675715 GO_REF:0000033, RGD:2316616 NCBI chr 5:155,839,929...155,866,541
Ensembl chr 5:150,556,615...150,583,231
JBrowse link
G Cdadc1 cytidine and dCMP deaminase domain containing 1 involved_in ISO
IBA
(PMID:26945630)
GO_REF:0000033
RGD
GO_Central
PMID:26945630 GO_REF:0000033 NCBI chr15:37,902,789...37,934,853
Ensembl chr15:33,723,435...33,755,576
JBrowse link
G Dctd dCMP deaminase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:44,066,952...44,098,654
Ensembl chr16:44,055,128...44,098,446
JBrowse link
deoxyadenosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857117|MGI:2155977|MGI:2683027 (PMID:10720488), (PMID:14607964), (PMID:7592575), (PMID:7670465), (PMID:7731963), (PMID:9272950), (PMID:9478961)
MGI:1857117 (PMID:10720488)
Ensembl
RGD
PMID:7592575 PMID:7670465 PMID:7731963 PMID:9272950 PMID:9478961 More... GO_REF:0000107 NCBI chr 3:172,818,174...172,842,283
Ensembl chr 3:152,398,747...152,447,088
JBrowse link
G Pnp purine nucleoside phosphorylase involved_in ISO (PMID:6771276) RGD PMID:6771276 NCBI chr15:26,644,147...26,651,808
Ensembl chr15:24,170,602...24,203,986
JBrowse link
G Uox urate oxidase involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:235,486,867...235,523,053
Ensembl chr 2:235,440,619...235,523,029
JBrowse link
G Urad ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase involved_in ISO (PMID:16462750) RGD PMID:16462750 NCBI chr12:7,709,278...7,718,925
Ensembl chr12:7,709,312...7,718,923
JBrowse link
G Xdh xanthine dehydrogenase involved_in IEA
ISO
GO_REF:0000107
(PMID:8064675)
Ensembl
RGD
PMID:8064675 GO_REF:0000107 NCBI chr 6:27,282,319...27,344,022
Ensembl chr 6:21,530,113...21,592,268
JBrowse link
deoxyguanosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gda guanine deaminase involved_in IEA
ISO
GO_REF:0000107
(PMID:8064675)
Ensembl
RGD
PMID:8064675 GO_REF:0000107 NCBI chr 1:228,333,401...228,408,901
Ensembl chr 1:218,906,815...218,982,416
JBrowse link
G Uox urate oxidase involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:235,486,867...235,523,053
Ensembl chr 2:235,440,619...235,523,029
JBrowse link
G Urad ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase involved_in ISO (PMID:16462750) RGD PMID:16462750 NCBI chr12:7,709,278...7,718,925
Ensembl chr12:7,709,312...7,718,923
JBrowse link
G Xdh xanthine dehydrogenase involved_in IEA
ISO
GO_REF:0000107
(PMID:29895374), (PMID:30936145), (PMID:8226898)
Ensembl
RGD
PMID:8226898 PMID:29895374 PMID:30936145 GO_REF:0000107 NCBI chr 6:27,282,319...27,344,022
Ensembl chr 6:21,530,113...21,592,268
JBrowse link
deoxyinosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnp purine nucleoside phosphorylase involved_in ISO (PMID:6771276) RGD PMID:6771276 NCBI chr15:26,644,147...26,651,808
Ensembl chr15:24,170,602...24,203,986
JBrowse link
G Uox urate oxidase involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:235,486,867...235,523,053
Ensembl chr 2:235,440,619...235,523,029
JBrowse link
G Urad ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase involved_in ISO (PMID:16462750) RGD PMID:16462750 NCBI chr12:7,709,278...7,718,925
Ensembl chr12:7,709,312...7,718,923
JBrowse link
G Xdh xanthine dehydrogenase involved_in IEA
ISO
GO_REF:0000107
MGI:2448161 (PMID:12502743), (PMID:1590774), (PMID:29895374), (PMID:30936145), (PMID:8226898)
(PMID:1619276)
Ensembl
RGD
PMID:1590774 PMID:1619276 PMID:8226898 PMID:12502743 PMID:29895374 More... GO_REF:0000107 NCBI chr 6:27,282,319...27,344,022
Ensembl chr 6:21,530,113...21,592,268
JBrowse link
deoxyribonucleoside catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dera deoxyribose-phosphate aldolase involved_in ISO (PMID:9226884) RGD PMID:9226884 NCBI chr 4:172,394,971...172,473,746
Ensembl chr 4:170,663,665...170,758,865
JBrowse link
inosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnp purine nucleoside phosphorylase involved_in
acts_upstream_of_or_within
ISO (PMID:23438750)
(PMID:16964310)
RGD PMID:16964310 PMID:23438750 NCBI chr15:26,644,147...26,651,808
Ensembl chr15:24,170,602...24,203,986
JBrowse link
G Uox urate oxidase involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:235,486,867...235,523,053
Ensembl chr 2:235,440,619...235,523,029
JBrowse link
G Urad ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase involved_in ISO (PMID:16462750) RGD PMID:16462750 NCBI chr12:7,709,278...7,718,925
Ensembl chr12:7,709,312...7,718,923
JBrowse link
G Xdh xanthine dehydrogenase involved_in IEA
ISO
IDA
GO_REF:0000107
MGI:2448161 (PMID:12502743), (PMID:1590774), (PMID:29895374), (PMID:30936145), (PMID:8226898)
PMID:1619276
(PMID:1619276)
Ensembl
RGD
PMID:1590774 PMID:1619276 PMID:8226898 PMID:12502743 PMID:29895374 More... GO_REF:0000107, RGD:127285395 NCBI chr 6:27,282,319...27,344,022
Ensembl chr 6:21,530,113...21,592,268
JBrowse link
nicotinamide riboside catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mtap methylthioadenosine phosphorylase NOT|involved_in ISO (PMID:19001417) RGD PMID:19001417 NCBI chr 5:108,990,270...109,036,494
Ensembl chr 5:103,873,020...103,939,406
JBrowse link
G Pnp purine nucleoside phosphorylase involved_in ISO (PMID:19001417) RGD PMID:19001417 NCBI chr15:26,644,147...26,651,808
Ensembl chr15:24,170,602...24,203,986
JBrowse link
purine nucleoside catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt1 nudix hydrolase 1 involved_in ISO
ISS
(PMID:11139615)
GO_REF:0000024
RGD
UniProt
PMID:11139615 GO_REF:0000024 NCBI chr12:14,302,514...14,309,559
Ensembl chr12:14,302,694...14,305,826
JBrowse link
purine ribonucleoside catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Enpp4 ectonucleotide pyrophosphatase/phosphodiesterase 4 involved_in ISO (PMID:22995898) RGD PMID:22995898 NCBI chr 9:16,888,923...16,898,860
Ensembl chr 9:16,887,739...16,898,860
JBrowse link
pyrimidine nucleoside catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upb1 beta-ureidopropionase 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:22525402)
UniProt
RGD
PMID:22525402 GO_REF:0000024 NCBI chr20:13,216,693...13,243,016
Ensembl chr20:13,217,258...13,243,590
JBrowse link
S-adenosylhomocysteine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahcy adenosylhomocysteinase acts_upstream_of_or_within IDA
ISO
(PMID:12023972) RGD PMID:12023972 PMID:11741948 RGD:730275 NCBI chr 3:164,029,338...164,044,562
Ensembl chr 3:143,569,094...143,584,393
JBrowse link
thymidine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:1512248)
Ensembl
UniProt
RGD
PMID:1512248 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:209,293,902...210,159,777
Ensembl chr 2:206,609,122...207,474,982
JBrowse link
UDP-alpha-D-glucose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Galt galactose-1-phosphate uridylyltransferase IDA RGD PMID:8255669 RGD:1598677 NCBI chr 5:56,927,039...56,930,284
Ensembl chr 5:56,926,724...56,930,265
JBrowse link
UDP-N-acetylglucosamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mgat1 alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within ISO (PMID:1421759) RGD PMID:1421759 NCBI chr10:33,563,642...33,582,718
Ensembl chr10:33,561,388...33,591,503
JBrowse link
uridine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upp1 uridine phosphorylase 1 involved_in ISO
IBA
(PMID:7488099)
(PMID:23355744), (PMID:7744869)
GO_REF:0000033
RGD
GO_Central
PMID:7488099 PMID:7744869 PMID:23355744 GO_REF:0000033 NCBI chr14:88,023,155...88,043,036
Ensembl chr14:83,809,960...83,829,462
JBrowse link
G Upp2 uridine phosphorylase 2 involved_in ISO
IBA
(PMID:12849978), (PMID:21855639)
(PMID:14715930)
GO_REF:0000033
RGD
GO_Central
PMID:12849978 PMID:14715930 PMID:21855639 GO_REF:0000033 NCBI chr 3:43,273,048...43,317,417
Ensembl chr 3:43,273,048...43,317,417
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    cellular process 19525
      metabolic process 12160
        catabolic process 2919
          small molecule catabolic process 371
            nucleobase-containing small molecule catabolic process 23
              nucleoside catabolic process + 19
              nucleotide-sugar catabolic process + 2
Path 2
Term Annotations click to browse term
  biological_process 20536
    cellular process 19525
      metabolic process 12160
        primary metabolic process 10746
          nucleobase-containing compound metabolic process 5944
            nucleobase-containing small molecule metabolic process 729
              nucleobase-containing small molecule catabolic process 23
                nucleoside catabolic process + 19
                nucleotide-sugar catabolic process + 2
paths to the root