ONTOLOGY REPORT - ANNOTATIONS |
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Term: | nucleobase-containing small molecule catabolic process |
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Accession: | GO:0034656
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browse the term
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Definition: | The chemical reactions and pathways resulting in the breakdown of a nucleobase-containing small molecule: a nucleobase, a nucleoside, or a nucleotide. |
Synonyms: | exact_synonym: | nucleobase, nucleoside and nucleotide breakdown; nucleobase, nucleoside and nucleotide catabolism; nucleobase, nucleoside and nucleotide degradation |
| xref: | Reactome:R-HSA-8956319 "Nucleotide catabolism" |
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Entpd4 |
ectonucleoside triphosphate diphosphohydrolase 4 |
involved_in |
ISO |
(PMID:10858452) |
RGD |
PMID:10858452 |
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NCBI chr15:51,040,665...51,068,450
Ensembl chr15:44,630,873...44,658,706
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Entpd7 |
ectonucleoside triphosphate diphosphohydrolase 7 |
involved_in |
ISO |
(PMID:11278936) |
RGD |
PMID:11278936 |
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NCBI chr 1:252,508,594...252,550,269
Ensembl chr 1:242,559,365...242,601,447
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Ada |
adenosine deaminase |
involved_in acts_upstream_of_or_within |
ISS ISO IBA IEA IMP |
GO_REF:0000024 (PMID:16742956), (PMID:8064675), (PMID:8672487) MGI:1857117|MGI:2155977|MGI:2681791|MGI:2683027 (PMID:10720488), (PMID:10899903), (PMID:11591798), (PMID:14607964), (PMID:15630442), (PMID:1618849), (PMID:16841096), (PMID:18340377), (PMID:2015347), (PMID:2387582), (PMID:7592575), (PMID:7670465), (PMID:7731963), (PMID:8663040), (PMID:8894685), (PMID:9272950), (PMID:9478961) GO_REF:0000033 GO_REF:0000107 (PMID:8894685) (PMID:16670267) |
UniProt RGD GO_Central Ensembl |
PMID:1618849 PMID:2015347 PMID:2387582 PMID:7592575 PMID:7670465 PMID:7731963 PMID:8064675 PMID:8663040 PMID:8672487 PMID:8894685 PMID:9272950 PMID:9478961 PMID:10720488 PMID:10899903 PMID:11591798 PMID:14607964 PMID:15630442 PMID:16670267 PMID:16742956 PMID:16841096 PMID:18340377 PMID:30269308 More...
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GO_REF:0000024 GO_REF:0000033 GO_REF:0000107, RGD:152995394 |
NCBI chr 3:172,818,174...172,842,283
Ensembl chr 3:152,398,747...152,447,088
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Uox |
urate oxidase |
involved_in |
IEA |
GO_REF:0000107 |
Ensembl |
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GO_REF:0000107 |
NCBI chr 2:235,486,867...235,523,053
Ensembl chr 2:235,440,619...235,523,029
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Urad |
ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase |
involved_in |
ISO |
(PMID:16462750) |
RGD |
PMID:16462750 |
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NCBI chr12:7,709,278...7,718,925
Ensembl chr12:7,709,312...7,718,923
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Xdh |
xanthine dehydrogenase |
involved_in |
IEA ISO IDA |
GO_REF:0000107 MGI:2448161 (PMID:12502743), (PMID:1590774), (PMID:29895374), (PMID:30936145), (PMID:8226898) PMID:1619276 |
Ensembl RGD |
PMID:1590774 PMID:8226898 PMID:12502743 PMID:29895374 PMID:30936145 PMID:1619276 More...
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GO_REF:0000107, RGD:127285395 |
NCBI chr 6:27,282,319...27,344,022
Ensembl chr 6:21,530,113...21,592,268
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Aicda |
activation-induced cytidine deaminase |
involved_in |
ISO |
(PMID:12692563) |
RGD |
PMID:12692563 |
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NCBI chr 4:157,446,120...157,455,958
Ensembl chr 4:155,774,132...155,783,972
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Cda |
cytidine deaminase |
involved_in |
IDA IBA ISO |
GO_REF:0000033 (PMID:9596658) |
GO_Central RGD |
PMID:9596658 PMID:675715 |
GO_REF:0000033, RGD:2316616 |
NCBI chr 5:155,839,929...155,866,541
Ensembl chr 5:150,556,615...150,583,231
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Cdadc1 |
cytidine and dCMP deaminase domain containing 1 |
involved_in |
ISO IBA |
(PMID:26945630) GO_REF:0000033 |
RGD GO_Central |
PMID:26945630 |
GO_REF:0000033 |
NCBI chr15:37,902,789...37,934,853
Ensembl chr15:33,723,435...33,755,576
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Dctd |
dCMP deaminase |
involved_in |
IBA |
GO_REF:0000033 |
GO_Central |
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GO_REF:0000033 |
NCBI chr16:44,066,952...44,098,654
Ensembl chr16:44,055,128...44,098,446
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Ada |
adenosine deaminase |
involved_in acts_upstream_of_or_within |
IEA ISO |
GO_REF:0000107 MGI:1857117|MGI:2155977|MGI:2683027 (PMID:10720488), (PMID:14607964), (PMID:7592575), (PMID:7670465), (PMID:7731963), (PMID:9272950), (PMID:9478961) MGI:1857117 (PMID:10720488) |
Ensembl RGD |
PMID:7592575 PMID:7670465 PMID:7731963 PMID:9272950 PMID:9478961 PMID:10720488 PMID:14607964 More...
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GO_REF:0000107 |
NCBI chr 3:172,818,174...172,842,283
Ensembl chr 3:152,398,747...152,447,088
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Pnp |
purine nucleoside phosphorylase |
involved_in |
ISO |
(PMID:6771276) |
RGD |
PMID:6771276 |
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NCBI chr15:26,644,147...26,651,808
Ensembl chr15:24,170,602...24,203,986
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Uox |
urate oxidase |
involved_in |
IEA |
GO_REF:0000107 |
Ensembl |
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GO_REF:0000107 |
NCBI chr 2:235,486,867...235,523,053
Ensembl chr 2:235,440,619...235,523,029
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G |
Urad |
ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase |
involved_in |
ISO |
(PMID:16462750) |
RGD |
PMID:16462750 |
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NCBI chr12:7,709,278...7,718,925
Ensembl chr12:7,709,312...7,718,923
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Xdh |
xanthine dehydrogenase |
involved_in |
IEA ISO |
GO_REF:0000107 (PMID:8064675) |
Ensembl RGD |
PMID:8064675 |
GO_REF:0000107 |
NCBI chr 6:27,282,319...27,344,022
Ensembl chr 6:21,530,113...21,592,268
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Gda |
guanine deaminase |
involved_in |
IEA ISO |
GO_REF:0000107 (PMID:8064675) |
Ensembl RGD |
PMID:8064675 |
GO_REF:0000107 |
NCBI chr 1:228,333,401...228,408,901
Ensembl chr 1:218,906,815...218,982,416
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Uox |
urate oxidase |
involved_in |
IEA |
GO_REF:0000107 |
Ensembl |
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GO_REF:0000107 |
NCBI chr 2:235,486,867...235,523,053
Ensembl chr 2:235,440,619...235,523,029
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G |
Urad |
ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase |
involved_in |
ISO |
(PMID:16462750) |
RGD |
PMID:16462750 |
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NCBI chr12:7,709,278...7,718,925
Ensembl chr12:7,709,312...7,718,923
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G |
Xdh |
xanthine dehydrogenase |
involved_in |
IEA ISO |
GO_REF:0000107 (PMID:29895374), (PMID:30936145), (PMID:8226898) |
Ensembl RGD |
PMID:8226898 PMID:29895374 PMID:30936145 |
GO_REF:0000107 |
NCBI chr 6:27,282,319...27,344,022
Ensembl chr 6:21,530,113...21,592,268
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Pnp |
purine nucleoside phosphorylase |
involved_in |
ISO |
(PMID:6771276) |
RGD |
PMID:6771276 |
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NCBI chr15:26,644,147...26,651,808
Ensembl chr15:24,170,602...24,203,986
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G |
Uox |
urate oxidase |
involved_in |
IEA |
GO_REF:0000107 |
Ensembl |
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GO_REF:0000107 |
NCBI chr 2:235,486,867...235,523,053
Ensembl chr 2:235,440,619...235,523,029
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G |
Urad |
ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase |
involved_in |
ISO |
(PMID:16462750) |
RGD |
PMID:16462750 |
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NCBI chr12:7,709,278...7,718,925
Ensembl chr12:7,709,312...7,718,923
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G |
Xdh |
xanthine dehydrogenase |
involved_in |
IEA ISO |
GO_REF:0000107 MGI:2448161 (PMID:12502743), (PMID:1590774), (PMID:29895374), (PMID:30936145), (PMID:8226898) (PMID:1619276) |
Ensembl RGD |
PMID:1590774 PMID:1619276 PMID:8226898 PMID:12502743 PMID:29895374 PMID:30936145 More...
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GO_REF:0000107 |
NCBI chr 6:27,282,319...27,344,022
Ensembl chr 6:21,530,113...21,592,268
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Dera |
deoxyribose-phosphate aldolase |
involved_in |
ISO |
(PMID:9226884) |
RGD |
PMID:9226884 |
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NCBI chr 4:172,394,971...172,473,746
Ensembl chr 4:170,663,665...170,758,865
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Pnp |
purine nucleoside phosphorylase |
involved_in acts_upstream_of_or_within |
ISO |
(PMID:23438750) (PMID:16964310) |
RGD |
PMID:16964310 PMID:23438750 |
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NCBI chr15:26,644,147...26,651,808
Ensembl chr15:24,170,602...24,203,986
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G |
Uox |
urate oxidase |
involved_in |
IEA |
GO_REF:0000107 |
Ensembl |
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GO_REF:0000107 |
NCBI chr 2:235,486,867...235,523,053
Ensembl chr 2:235,440,619...235,523,029
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G |
Urad |
ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase |
involved_in |
ISO |
(PMID:16462750) |
RGD |
PMID:16462750 |
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NCBI chr12:7,709,278...7,718,925
Ensembl chr12:7,709,312...7,718,923
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G |
Xdh |
xanthine dehydrogenase |
involved_in |
IEA ISO IDA |
GO_REF:0000107 MGI:2448161 (PMID:12502743), (PMID:1590774), (PMID:29895374), (PMID:30936145), (PMID:8226898) PMID:1619276 (PMID:1619276) |
Ensembl RGD |
PMID:1590774 PMID:1619276 PMID:8226898 PMID:12502743 PMID:29895374 PMID:30936145 PMID:1619276 More...
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GO_REF:0000107, RGD:127285395 |
NCBI chr 6:27,282,319...27,344,022
Ensembl chr 6:21,530,113...21,592,268
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Mtap |
methylthioadenosine phosphorylase |
NOT|involved_in |
ISO |
(PMID:19001417) |
RGD |
PMID:19001417 |
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NCBI chr 5:108,990,270...109,036,494
Ensembl chr 5:103,873,020...103,939,406
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Pnp |
purine nucleoside phosphorylase |
involved_in |
ISO |
(PMID:19001417) |
RGD |
PMID:19001417 |
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NCBI chr15:26,644,147...26,651,808
Ensembl chr15:24,170,602...24,203,986
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Nudt1 |
nudix hydrolase 1 |
involved_in |
ISO ISS |
(PMID:11139615) GO_REF:0000024 |
RGD UniProt |
PMID:11139615 |
GO_REF:0000024 |
NCBI chr12:14,302,514...14,309,559
Ensembl chr12:14,302,694...14,305,826
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Enpp4 |
ectonucleotide pyrophosphatase/phosphodiesterase 4 |
involved_in |
ISO |
(PMID:22995898) |
RGD |
PMID:22995898 |
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NCBI chr 9:16,888,923...16,898,860
Ensembl chr 9:16,887,739...16,898,860
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Upb1 |
beta-ureidopropionase 1 |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:22525402) |
UniProt RGD |
PMID:22525402 |
GO_REF:0000024 |
NCBI chr20:13,216,693...13,243,016
Ensembl chr20:13,217,258...13,243,590
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Ahcy |
adenosylhomocysteinase |
acts_upstream_of_or_within |
IDA ISO |
(PMID:12023972) |
RGD |
PMID:12023972 PMID:11741948 |
RGD:730275 |
NCBI chr 3:164,029,338...164,044,562
Ensembl chr 3:143,569,094...143,584,393
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Dpyd |
dihydropyrimidine dehydrogenase |
involved_in |
IEA ISS ISO |
GO_REF:0000107 GO_REF:0000024 (PMID:1512248) |
Ensembl UniProt RGD |
PMID:1512248 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr 2:209,293,902...210,159,777
Ensembl chr 2:206,609,122...207,474,982
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Galt |
galactose-1-phosphate uridylyltransferase |
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IDA |
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RGD |
PMID:8255669 |
RGD:1598677 |
NCBI chr 5:56,927,039...56,930,284
Ensembl chr 5:56,926,724...56,930,265
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Mgat1 |
alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase |
acts_upstream_of_or_within |
ISO |
(PMID:1421759) |
RGD |
PMID:1421759 |
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NCBI chr10:33,563,642...33,582,718
Ensembl chr10:33,561,388...33,591,503
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Upp1 |
uridine phosphorylase 1 |
involved_in |
ISO IBA |
(PMID:7488099) (PMID:23355744), (PMID:7744869) GO_REF:0000033 |
RGD GO_Central |
PMID:7488099 PMID:7744869 PMID:23355744 |
GO_REF:0000033 |
NCBI chr14:88,023,155...88,043,036
Ensembl chr14:83,809,960...83,829,462
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Upp2 |
uridine phosphorylase 2 |
involved_in |
ISO IBA |
(PMID:12849978), (PMID:21855639) (PMID:14715930) GO_REF:0000033 |
RGD GO_Central |
PMID:12849978 PMID:14715930 PMID:21855639 |
GO_REF:0000033 |
NCBI chr 3:43,273,048...43,317,417
Ensembl chr 3:43,273,048...43,317,417
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Term paths to the root
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