Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:nucleobase-containing small molecule biosynthetic process
go back to main search page
Accession:GO:0034404 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a nucleobase-containing small molecule: a nucleobase, a nucleoside, or a nucleotide.
Synonyms:exact_synonym: nucleobase, nucleoside and nucleotide anabolism;   nucleobase, nucleoside and nucleotide biosynthesis;   nucleobase, nucleoside and nucleotide formation;   nucleobase, nucleoside and nucleotide synthesis
 xref: Reactome:R-HSA-8956320 "Nucleotide biosynthesis"



show annotations for term's descendants           Sort by:
adenosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5e 5' nucleotidase, ecto involved_in
acts_upstream_of_or_within
IEA
ISO
IMP
GO_REF:0000107
MGI:3522017 (PMID:16547283)
Ensembl
RGD
PMID:16547283 PMID:30269308 GO_REF:0000107, RGD:152995394 NCBI chr 8:98,150,925...98,195,646
Ensembl chr 8:89,270,696...89,314,881
JBrowse link
inosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase involved_in
acts_upstream_of_or_within
ISS
ISO
IEA
IBA
GO_REF:0000024
(PMID:8894685)
GO_REF:0000107
GO_REF:0000033
MGI:1857117|MGI:2681791|MGI:2683027 (PMID:10720488), (PMID:1618849), (PMID:2015347), (PMID:7592575), (PMID:7731963), (PMID:8663040), (PMID:8894685), (PMID:9272950)
(PMID:8672487)
UniProt
RGD
Ensembl
GO_Central
PMID:1618849 PMID:2015347 PMID:7592575 PMID:7731963 PMID:8663040 More... GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:172,818,174...172,842,283
Ensembl chr 3:152,398,747...152,447,088
JBrowse link
G Ak1 adenylate kinase 1 IDA RGD PMID:19049516 RGD:5134369 NCBI chr 3:36,310,113...36,320,760
Ensembl chr 3:15,912,485...15,923,041
JBrowse link
nucleoside salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctd dCMP deaminase involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:33833118)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:33833118 GO_REF:0000024 GO_REF:0000107 NCBI chr16:44,066,952...44,098,654
Ensembl chr16:44,055,128...44,098,446
JBrowse link
G Dnph1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:33833118)
UniProt
RGD
PMID:33833118 GO_REF:0000024 NCBI chr 9:21,978,894...21,981,631
Ensembl chr 9:14,481,066...14,484,022
JBrowse link
G Qng1 Q-nucleotide N-glycosylase 1 involved_in ISO (PMID:36610787) RGD PMID:36610787 NCBI chr17:6,286,801...6,294,400
Ensembl chr17:6,281,400...6,288,975
JBrowse link
purine ribonucleoside salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adk adenosine kinase acts_upstream_of_or_within
involved_in
NAS
ISO
IEA
(PMID:14736855)
GO_REF:0000043
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:14736855 PMID:8917457 GO_REF:0000043 GO_REF:0000107, RGD:631740 NCBI chr15:2,912,543...3,295,745
Ensembl chr15:2,863,244...3,246,510
JBrowse link
G Aprt adenine phosphoribosyl transferase involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:96217 (PMID:8485579)
Ensembl
RGD
PMID:8485579 GO_REF:0000107 NCBI chr19:67,534,737...67,537,027
Ensembl chr19:50,626,202...50,628,431
JBrowse link
G Hprt1 hypoxanthine phosphoribosyltransferase 1 involved_in
acts_upstream_of_or_within
ISO
IEA
(PMID:9824441)
MGI:1857299|MGI:88061 (PMID:10037486), (PMID:12944494), (PMID:8485579), (PMID:8492116)
GO_REF:0000107
GO_REF:0000043
RGD
Ensembl
UniProt
PMID:8485579 PMID:8492116 PMID:9824441 PMID:10037486 PMID:12944494 GO_REF:0000043 GO_REF:0000107 NCBI chr  X:137,655,744...137,687,718
Ensembl chr  X:132,736,096...132,768,154
JBrowse link
G Mtap methylthioadenosine phosphorylase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:108,990,270...109,036,494
Ensembl chr 5:103,873,020...103,939,406
JBrowse link
G Pgm2 phosphoglucomutase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:44,519,906...44,553,420
Ensembl chr14:44,164,425...44,199,967
JBrowse link
G Pnp purine nucleoside phosphorylase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:26,644,147...26,651,808
Ensembl chr15:24,170,602...24,203,986
JBrowse link
G Prtfdc1 phosphoribosyl transferase domain containing 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:83,549,608...83,654,517
Ensembl chr17:83,548,803...83,655,179
JBrowse link
queuosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Qtrt1 queuine tRNA-ribosyltransferase catalytic subunit 1 TAS RGD PMID:6986171 RGD:724772 NCBI chr 8:19,965,801...19,973,843
Ensembl chr 8:19,966,336...19,973,837
JBrowse link
thymidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dtymk deoxythymidylate kinase involved_in ISO (PMID:12614151) RGD PMID:12614151 NCBI chr 9:101,762,899...101,771,733
Ensembl chr 9:94,315,552...94,324,870
JBrowse link
G Tk1 thymidine kinase 1 involved_in ISO (PMID:14697231) RGD PMID:14697231 NCBI chr10:103,533,449...103,544,818
Ensembl chr10:103,031,521...103,046,920
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    cellular process 19525
      metabolic process 12160
        biosynthetic process 8651
          small molecule biosynthetic process 647
            nucleobase-containing small molecule biosynthetic process 16
              nucleoside biosynthetic process + 16
Path 2
Term Annotations click to browse term
  biological_process 20536
    cellular process 19525
      metabolic process 12160
        primary metabolic process 10746
          nucleobase-containing compound metabolic process 5944
            nucleobase-containing small molecule metabolic process 729
              nucleobase-containing small molecule biosynthetic process 16
                nucleoside biosynthetic process + 16
paths to the root