Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:phagophore assembly site membrane
go back to main search page
Accession:GO:0034045 term browser browse the term
Definition:A cellular membrane associated with the phagophore assembly site.
Synonyms:exact_synonym: PAS membrane
 narrow_synonym: pre-autophagosomal structure membrane
 related_synonym: isolation membrane;   phagophore

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
phagophore assembly site membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:6,046,073...6,056,321
Ensembl chrNW_004624733:6,045,432...6,060,784 		JBrowse link
G Atg13 autophagy related 13 is_active_in ISO (PMID:19597335) UniProt PMID:19597335 NCBI chrNW_004624767:1,924,672...1,953,868 JBrowse link
G Atg14 autophagy related 14 located_in ISO (PMID:19270696) UniProt PMID:19270696 NCBI chrNW_004624884:165,443...220,525 JBrowse link
G Atg16l1 autophagy related 16 like 1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624843:5,797,725...5,838,768
Ensembl chrNW_004624843:5,805,069...5,838,741 		JBrowse link
G Atg16l2 autophagy related 16 like 2 located_in ISO (PMID:12665549) ComplexPortal PMID:12665549 NCBI chrNW_004624817:4,123,963...4,153,720
Ensembl chrNW_004624817:4,140,543...4,147,597 		JBrowse link
G Atg2a autophagy related 2A located_in IEA UniProt GO_REF:0000044 NCBI chrNW_004624767:21,480,320...21,507,934
Ensembl chrNW_004624767:21,488,404...21,507,528 		JBrowse link
G Atg2b autophagy related 2B located_in IEA UniProt GO_REF:0000044 NCBI chrNW_004624734:7,015,356...7,097,392
Ensembl chrNW_004624734:7,015,672...7,096,348 		JBrowse link
G Atg5 autophagy related 5 located_in IEA Ensembl
TreeGrafter
UniProt		 GO_REF:0000044 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624780:15,987,483...16,124,158
Ensembl chrNW_004624780:15,987,397...16,124,151 		JBrowse link
G Atg9a autophagy related 9A located_in IEA UniProt GO_REF:0000044 GO_REF:0000104 NCBI chrNW_004624823:5,787,525...5,797,536
Ensembl chrNW_004624823:5,787,601...5,797,534 		JBrowse link
G Atg9b autophagy related 9B located_in IEA UniProt GO_REF:0000044 GO_REF:0000104 NCBI chrNW_004624800:5,589,366...5,600,253
Ensembl chrNW_004624800:5,591,297...5,598,739 		JBrowse link
G LOC101712848 serine/threonine-protein kinase ULK2 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624849:6,353,989...6,447,986
Ensembl chrNW_004624849:6,354,678...6,448,026 		JBrowse link
G LOC101721047 RB1-inducible coiled-coil protein 1-like located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624784:5,426,159...5,447,188 JBrowse link
G Rab1b RAB1B, member RAS oncogene family located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624767:20,091,120...20,098,855
Ensembl chrNW_004624767:20,090,441...20,098,913 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family located_in ISO (PMID:19956673) UniProt PMID:19956673 NCBI chrNW_004625042:56,509...112,519
Ensembl chrNW_004625042:56,517...112,612 		JBrowse link
G Rb1cc1 RB1 inducible coiled-coil 1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624735:2,778,191...2,860,762 JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:27,680,994...27,697,342
Ensembl chrNW_004624747:27,681,033...27,695,966 		JBrowse link
G Ulk3 unc-51 like kinase 3 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624894:53,677...59,807
Ensembl chrNW_004624894:54,683...59,716 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 located_in ISO (PMID:17618624) UniProt PMID:17618624 NCBI chrNW_004624870:3,487,814...3,518,206
Ensembl chrNW_004624870:3,486,375...3,518,193 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 located_in ISO (PMID:20505359) UniProt PMID:20505359 NCBI chrNW_004624740:28,306,655...28,346,430
Ensembl chrNW_004624740:28,306,052...28,346,508 		JBrowse link
extrinsic component of phagophore assembly site membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624884:165,443...220,525 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18619
    cellular anatomical structure 18486
      phagophore assembly site 41
        phagophore assembly site membrane 19
          ATG2-ATG18 complex 0
          extrinsic component of phagophore assembly site membrane 1
Path 2
Term Annotations click to browse term
  cellular_component 18619
    cellular anatomical structure 18486
      intracellular anatomical structure 14267
        cytoplasm 10505
          phagophore assembly site 41
            phagophore assembly site membrane 19
              ATG2-ATG18 complex 0
              extrinsic component of phagophore assembly site membrane 1
paths to the root