Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:phagophore assembly site membrane
go back to main search page
Accession:GO:0034045 term browser browse the term
Definition:A cellular membrane associated with the phagophore assembly site.
Synonyms:exact_synonym: PAS membrane
 narrow_synonym: pre-autophagosomal structure membrane
 related_synonym: isolation membrane;   phagophore


show annotations for term's descendants           Sort by:
phagophore assembly site membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG12 autophagy related 12 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr11:5,531,062...5,543,034
Ensembl chr11:5,531,759...5,542,743 		JBrowse link
G ATG13 autophagy related 13 located_in
is_active_in		 IEA
ISO		 (PMID:19597335) Ensembl
UniProt		 PMID:19597335 GO_REF:0000107 NCBI chr18:42,834,538...42,886,873
Ensembl chr18:42,836,755...42,886,855 		JBrowse link
G ATG14 autophagy related 14 located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:31,199,097...31,234,200
Ensembl chr 8:31,201,709...31,234,217 		JBrowse link
G ATG16L1 autophagy related 16 like 1 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr25:44,761,034...44,800,033
Ensembl chr25:44,761,185...44,798,672 		JBrowse link
G ATG16L2 autophagy related 16 like 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr21:25,404,667...25,433,456
Ensembl chr21:25,405,694...25,419,896 		JBrowse link
G ATG2A autophagy related 2A located_in IEA UniProt GO_REF:0000044 NCBI chr18:52,258,070...52,277,953
Ensembl chr18:52,258,187...52,277,965 		JBrowse link
G ATG2B autophagy related 2B located_in IEA UniProt GO_REF:0000044 NCBI chr 8:65,039,960...65,110,811
Ensembl chr 8:65,044,194...65,110,796 		JBrowse link
G ATG5 autophagy related 5 located_in
is_active_in		 IEA
IBA		 Ensembl
UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000044 GO_REF:0000107 NCBI chr12:63,565,859...63,692,383
Ensembl chr12:63,567,568...63,683,485 		JBrowse link
G ATG9A autophagy related 9A located_in IEA UniProt GO_REF:0000044 GO_REF:0000104 NCBI chr37:25,768,287...25,777,529
Ensembl chr37:25,768,275...25,890,811 		JBrowse link
G ATG9B autophagy related 9B located_in IEA UniProt GO_REF:0000044 GO_REF:0000104 NCBI chr16:15,072,436...15,082,867
Ensembl chr16:15,072,312...15,080,397 		JBrowse link
G RAB1B RAB1B, member RAS oncogene family located_in ISO (PMID:20545908) UniProt PMID:20545908 NCBI chr18:51,026,975...51,034,356
Ensembl chr18:51,028,013...51,034,473 		JBrowse link
G RAB7A RAB7A, member RAS oncogene family located_in IEA Ensembl GO_REF:0000107 NCBI chr20:2,704,716...2,776,518
Ensembl chr20:2,704,752...2,826,636 		JBrowse link
G RB1CC1 RB1 inducible coiled-coil 1 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr29:4,445,668...4,544,223
Ensembl chr29:4,375,785...4,517,168 		JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 located_in
is_active_in		 IEA
IBA		 UniProt
GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107 NCBI chr26:968,714...982,244
Ensembl chr26:970,138...982,229 		JBrowse link
G ULK2 unc-51 like autophagy activating kinase 2 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:40,355,070...40,437,758
Ensembl chr 5:40,354,263...40,435,747 		JBrowse link
G ULK3 unc-51 like kinase 3 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr30:37,897,641...37,903,625
Ensembl chr30:37,897,804...37,903,700 		JBrowse link
G WDR45 WD repeat domain 45 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:42,221,261...42,237,535
Ensembl chr  X:42,218,046...42,226,422 		JBrowse link
G WDR45B WD repeat domain 45B is_active_in IBA GO_Central GO_REF:0000033
G WIPI1 WD repeat domain, phosphoinositide interacting 1 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:15,115,098...15,147,893
Ensembl chr 9:15,115,315...15,149,147 		JBrowse link
G WIPI2 WD repeat domain, phosphoinositide interacting 2 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:12,656,469...12,698,623
Ensembl chr 6:12,658,239...12,698,734 		JBrowse link
extrinsic component of phagophore assembly site membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG14 autophagy related 14 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:31,199,097...31,234,200
Ensembl chr 8:31,201,709...31,234,217 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 23074
    cellular anatomical structure 22784
      phagophore assembly site 38
        phagophore assembly site membrane 20
          ATG2-ATG18 complex 0
          extrinsic component of phagophore assembly site membrane 1
Path 2
Term Annotations click to browse term
  cellular_component 23074
    cellular anatomical structure 22784
      intracellular anatomical structure 18533
        cytoplasm 11307
          phagophore assembly site 38
            phagophore assembly site membrane 20
              ATG2-ATG18 complex 0
              extrinsic component of phagophore assembly site membrane 1
paths to the root