Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:phagophore assembly site membrane
go back to main search page
Accession:GO:0034045 term browser browse the term
Definition:A cellular membrane associated with the phagophore assembly site.
Synonyms:exact_synonym: PAS membrane
 narrow_synonym: pre-autophagosomal structure membrane
 related_synonym: isolation membrane;   phagophore


show annotations for term's descendants           Sort by:
phagophore assembly site membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:11266458), (PMID:12665549)		 GO_Central
RGD		 PMID:11266458 PMID:12665549 GO_REF:0000033 NCBI chr18:39,452,247...39,462,424
Ensembl chr18:39,452,191...39,462,418 		JBrowse link
G Atg13 autophagy related 13 is_active_in ISO (PMID:19597335) RGD PMID:19597335 NCBI chr 3:77,647,069...77,681,028
Ensembl chr 3:77,645,790...77,681,043 		JBrowse link
G Atg14 autophagy related 14 located_in ISO (PMID:19270696) RGD PMID:19270696 NCBI chr15:20,795,750...20,827,113
Ensembl chr15:20,795,750...20,827,113 		JBrowse link
G Atg16l1 autophagy related 16-like 1 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:12665549)		 GO_Central
RGD		 PMID:12665549 GO_REF:0000033 NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:88,422,038...88,457,529 		JBrowse link
G Atg16l2 autophagy related 16-like 2 located_in ISO (PMID:12665549) RGD PMID:12665549 NCBI chr 1:155,687,386...155,703,419
Ensembl chr 1:155,684,564...155,703,420 		JBrowse link
G Atg2a autophagy related 2A located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:203,542,559...203,562,242 		JBrowse link
G Atg2b autophagy related 2B located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 6:124,522,283...124,592,412
Ensembl chr 6:124,525,523...124,592,015 		JBrowse link
G Atg5 autophagy related 5 located_in
is_active_in		 IEA
ISO
IBA		 GO_REF:0000044
(PMID:11266458), (PMID:12665549), (PMID:23455425)
GO_REF:0000033		 UniProt
RGD
GO_Central		 PMID:11266458 PMID:12665549 PMID:23455425 GO_REF:0000033 GO_REF:0000044 NCBI chr20:47,798,217...47,889,216
Ensembl chr20:47,798,290...47,889,209 		JBrowse link
G Atg9a autophagy related 9A located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 9:76,677,403...76,688,050
Ensembl chr 9:76,677,404...76,687,986 		JBrowse link
G Atg9b autophagy related 9B located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:10,786,114...10,793,651 		JBrowse link
G Rab1b RAB1B, member RAS oncogene family located_in ISO (PMID:20545908) RGD PMID:20545908 NCBI chr 1:202,405,759...202,413,850
Ensembl chr 1:202,405,759...202,413,868
Ensembl chr  X:202,405,759...202,413,868 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family located_in ISO (PMID:19956673) RGD PMID:19956673 NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:120,461,963...120,506,889 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:18443221)		 GO_Central
RGD		 PMID:18443221 GO_REF:0000033 NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:13,161,648...13,225,560 		JBrowse link
G Stbd1 starch binding domain 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr14:15,470,452...15,473,857
Ensembl chr14:15,469,582...15,477,443 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 located_in
is_active_in		 ISO
IBA		 (PMID:18936157), (PMID:22885598)
(PMID:18443221)
GO_REF:0000033		 RGD
GO_Central		 PMID:18443221 PMID:18936157 PMID:22885598 GO_REF:0000033 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966 		JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 located_in
is_active_in		 ISO
IBA		 (PMID:18936157)
(PMID:18443221)
GO_REF:0000033		 RGD
GO_Central		 PMID:18443221 PMID:18936157 GO_REF:0000033 NCBI chr10:46,451,578...46,530,462
Ensembl chr10:46,454,030...46,530,407 		JBrowse link
G Ulk3 unc-51 like kinase 3 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:57,992,396...58,000,220
Ensembl chr 8:57,992,723...57,999,467 		JBrowse link
G Wdr45 WD repeat domain 45 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:14,776,280...14,782,202
Ensembl chr  X:14,776,293...14,782,202 		JBrowse link
G Wdr45b WD repeat domain 45B is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:106,597,558...106,629,488
Ensembl chr10:106,599,364...106,629,441 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 located_in
is_active_in		 ISO
IBA		 (PMID:17618624)
GO_REF:0000033		 RGD
GO_Central		 PMID:17618624 GO_REF:0000033 NCBI chr10:94,542,946...94,580,174
Ensembl chr10:94,542,946...94,579,846 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 located_in
is_active_in		 ISO
IBA
ISS		 (PMID:20505359)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:20505359 GO_REF:0000024 GO_REF:0000033 NCBI chr12:11,911,369...11,939,799
Ensembl chr12:11,911,337...11,939,794 		JBrowse link
extrinsic component of phagophore assembly site membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 located_in
is_active_in		 ISO
IBA		 (PMID:21518905)
GO_REF:0000033		 RGD
GO_Central		 PMID:21518905 GO_REF:0000033 NCBI chr15:20,795,750...20,827,113
Ensembl chr15:20,795,750...20,827,113 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20832
    cellular anatomical structure 20632
      phagophore assembly site 38
        phagophore assembly site membrane 21
          ATG2-ATG18 complex 0
          extrinsic component of phagophore assembly site membrane 1
Path 2
Term Annotations click to browse term
  cellular_component 20832
    cellular anatomical structure 20632
      intracellular anatomical structure 15188
        cytoplasm 11892
          phagophore assembly site 38
            phagophore assembly site membrane 21
              ATG2-ATG18 complex 0
              extrinsic component of phagophore assembly site membrane 1
paths to the root