ONTOLOGY REPORT - ANNOTATIONS
Term: T cell differentiation in thymus
Accession: GO:0033077
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Definition: The process in which a precursor cell type acquires the specialized features of a T cell via a differentiation pathway dependent upon transit through the thymus.
Comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'.
Synonyms: exact_synonym: thymic T cell differentiation; thymocyte cell differentiation; thymocyte differentiation
related_synonym: T cell development in thymus
G
Ada
adenosine deaminase
involved_in acts_upstream_of
IEA ISO
GO_REF:0000107 MGI:1857117|MGI:2683027 (PMID:11067867), (PMID:11435465), (PMID:12163459), (PMID:16670300)
Ensembl RGD
PMID:11067867 PMID:11435465 PMID:12163459 PMID:16670300
GO_REF:0000107
NCBI chr 3:172,818,174...172,842,283
Ensembl chr 3:152,398,747...152,447,088
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Adam17
ADAM metallopeptidase domain 17
involved_in
ISO
(PMID:17371977)
RGD
PMID:17371977
NCBI chr 6:46,601,583...46,663,690
Ensembl chr 6:40,872,856...40,920,639
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Apc
APC regulator of WNT signaling pathway
acts_upstream_of_or_within
ISO
MGI:3589207 (PMID:16025118)
RGD
PMID:16025118
NCBI chr18:26,138,382...26,196,021
Ensembl chr18:25,864,222...25,922,696
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B2m
beta-2 microglobulin
acts_upstream_of_or_within
ISO
MGI:95663 (PMID:18776904)
RGD
PMID:18776904
NCBI chr 3:129,549,236...129,555,354
Ensembl chr 3:109,095,729...109,101,766
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Bcl11b
BCL11 transcription factor B
acts_upstream_of_or_within
ISO
MGI:2663971 (PMID:16670294)
RGD
PMID:16670294
NCBI chr 6:132,598,968...132,692,123
Ensembl chr 6:126,834,531...126,928,224
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Bcl2
BCL2, apoptosis regulator
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2156165 (PMID:8170972), (PMID:9028316)
Ensembl RGD
PMID:8170972 PMID:9028316
GO_REF:0000107
NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743 Ensembl chr13:22,684,989...22,853,743
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Braf
B-Raf proto-oncogene, serine/threonine kinase
acts_upstream_of_or_within
ISO
MGI:3711006 (PMID:23334952)
RGD
PMID:23334952
NCBI chr 4:69,329,772...69,476,931
Ensembl chr 4:68,384,649...68,510,463
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Cd3e
CD3 epsilon subunit of T-cell receptor complex
IEP
RGD
PMID:11896936
RGD:2313407
NCBI chr 8:54,200,617...54,211,770
Ensembl chr 8:45,303,852...45,315,022
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Cdk6
cyclin-dependent kinase 6
acts_upstream_of_or_within
ISO
MGI:3833563|MGI:5141514 (PMID:21508411)
RGD
PMID:21508411
NCBI chr 4:31,592,384...31,784,732
Ensembl chr 4:30,646,460...30,829,634
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Ctnnb1
catenin beta 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1858008 (PMID:16025118)
Ensembl RGD
PMID:16025118
GO_REF:0000107
NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111
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Dnaja3
DnaJ heat shock protein family (Hsp40) member A3
acts_upstream_of_or_within
ISO
MGI:2448686|MGI:3040717 (PMID:15879105)
RGD
PMID:15879105
NCBI chr10:11,361,168...11,386,599
Ensembl chr10:10,854,732...10,880,161
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Fadd
Fas associated via death domain
involved_in
ISO ISS
(PMID:21876153) GO_REF:0000024
RGD UniProt
PMID:21876153
GO_REF:0000024
NCBI chr 1:209,169,245...209,175,423
Ensembl chr 1:199,739,994...199,745,653
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Fzd5
frizzled class receptor 5
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:11265645)
Ensembl RGD
PMID:11265645
GO_REF:0000107
NCBI chr 9:73,606,860...73,614,039
Ensembl chr 9:66,113,112...66,121,457
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Fzd7
frizzled class receptor 7
acts_upstream_of_or_within
ISO
(PMID:11265645)
RGD
PMID:11265645
NCBI chr 9:68,425,538...68,428,357
Ensembl chr 9:60,930,875...60,935,781
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Fzd8
frizzled class receptor 8
acts_upstream_of_or_within
ISO
(PMID:11265645)
RGD
PMID:11265645
NCBI chr17:62,007,849...62,015,485
Ensembl chr17:57,314,450...57,320,650
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Gata3
GATA binding protein 3
acts_upstream_of_or_within
ISO
MGI:2153825|MGI:2683927|MGI:4418042|MGI:88127 (PMID:14670303), (PMID:18776904), (PMID:19934022), (PMID:8945476)
RGD
PMID:8945476 PMID:14670303 PMID:18776904 PMID:19934022
NCBI chr17:73,544,234...73,575,670
Ensembl chr17:68,643,873...68,665,391
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Gba1
glucosylceramidase beta 1
acts_upstream_of_or_within
ISO
(PMID:22665763)
RGD
PMID:22665763
NCBI chr 2:176,902,141...176,916,015
Ensembl chr 2:174,609,403...174,618,263
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Gli3
GLI family zinc finger 3
involved_in acts_upstream_of_or_within
ISO
(PMID:15855276) MGI:1856276 (PMID:15855276)
RGD
PMID:15855276
NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712
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Il2rg
interleukin 2 receptor subunit gamma
acts_upstream_of
ISO
MGI:1857455|MGI:2429736 (PMID:9252128), (PMID:9916699)
RGD
PMID:9252128 PMID:9916699
NCBI chr X:70,435,340...70,439,052
Ensembl chr X:66,392,542...66,399,823
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Il7r
interleukin 7 receptor
acts_upstream_of
ISO
MGI:1857198 (PMID:9215626)
RGD
PMID:9215626
NCBI chr 2:60,179,561...60,204,937
Ensembl chr 2:58,454,217...58,477,757
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Jmjd6
jumonji domain containing 6, arginine demethylase and lysine hydroxylase
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3043930 (PMID:14715629)
Ensembl RGD
PMID:14715629
GO_REF:0000107
NCBI chr10:102,539,935...102,545,986
Ensembl chr10:102,041,120...102,047,182
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Mafb
MAF bZIP transcription factor B
acts_upstream_of_or_within
ISO
MGI:3663168 (PMID:19164599)
RGD
PMID:19164599
NCBI chr 3:169,417,890...169,419,810
Ensembl chr 3:148,998,122...149,000,031
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Mpzl2
myelin protein zero-like 2
acts_upstream_of_or_within
ISO
(PMID:19851463)
RGD
PMID:19851463
NCBI chr 8:45,348,285...45,359,298
Ensembl chr 8:45,348,285...45,359,298
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Mr1
major histocompatibility complex, class I-related
involved_in
IEA ISO
GO_REF:0000107 (PMID:12634786)
Ensembl RGD
PMID:12634786
GO_REF:0000107
NCBI chr13:69,850,420...69,868,302
Ensembl chr13:67,299,585...67,317,970
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Ncaph2
non-SMC condensin II complex, subunit H2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3710093 (PMID:17640884)
Ensembl RGD
PMID:17640884
GO_REF:0000107
NCBI chr 7:120,422,926...120,439,942
Ensembl chr 7:120,422,956...120,439,938
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Ncor1
nuclear receptor co-repressor 1
acts_upstream_of_or_within
ISO
MGI:2677822 (PMID:11030619)
RGD
PMID:11030619
NCBI chr10:47,498,852...47,641,612
Ensembl chr10:46,999,536...47,141,032
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Nfkbid
NFKB inhibitor delta
acts_upstream_of
ISO
(PMID:11931770)
RGD
PMID:11931770
NCBI chr 1:94,808,459...94,824,726
Ensembl chr 1:85,680,861...85,690,447
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Nkap
NFKB activating protein
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3765313|MGI:4839023 (PMID:20610818)
Ensembl RGD
PMID:20610818
GO_REF:0000107
NCBI chr X:121,238,714...121,258,360
Ensembl chr X:116,372,839...116,394,945
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Prkdc
protein kinase, DNA-activated, catalytic subunit
acts_upstream_of_or_within
ISO
MGI:2383951 (PMID:9768755)
RGD
PMID:9768755
NCBI chr11:98,544,952...98,762,499
Ensembl chr11:85,040,792...85,257,952
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Prr7
proline rich 7 (synaptic)
involved_in
ISO
MGI:4399196 (PMID:27657535)
RGD
PMID:27657535
NCBI chr17:9,170,405...9,178,814
Ensembl chr17:9,165,269...9,172,536
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Psmb11
proteasome subunit beta 11
acts_upstream_of_or_within
ISO
(PMID:31915251)
RGD
PMID:31915251
NCBI chr15:28,084,736...28,085,655
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Rabl3
RAB, member of RAS oncogene family-like 3
involved_in
ISO
(PMID:32220963)
RGD
PMID:32220963
NCBI chr11:76,658,723...76,687,681
Ensembl chr11:63,152,792...63,182,671
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Rag1
recombination activating 1
involved_in acts_upstream_of_or_within
ISO
(PMID:1547488) MGI:2448994 (PMID:9215624)
RGD
PMID:1547488 PMID:9215624
NCBI chr 3:108,372,087...108,383,184
Ensembl chr 3:87,917,004...87,928,291
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Rag2
recombination activating 2
involved_in
ISO
(PMID:1547488)
RGD
PMID:1547488
NCBI chr 3:108,357,399...108,367,186
Ensembl chr 3:87,902,238...87,911,066
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Ripk3
receptor-interacting serine-threonine kinase 3
involved_in
ISS ISO
GO_REF:0000024 UniProtKB:Q61160 (PMID:21876153)
UniProt RGD
PMID:21876153
GO_REF:0000024
NCBI chr15:33,253,071...33,262,025
Ensembl chr15:29,283,145...29,292,121
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Rorc
RAR-related orphan receptor C
acts_upstream_of_or_within
ISO
MGI:3026635 (PMID:15247480)
RGD
PMID:15247480
NCBI chr 2:184,698,779...184,723,942
Ensembl chr 2:182,009,286...182,034,907
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Rps6
ribosomal protein S6
acts_upstream_of_or_within
ISO
MGI:2387471|MGI:98834 (PMID:16357222)
RGD
PMID:16357222
NCBI chr 5:106,417,680...106,420,540
Ensembl chr 5:101,371,136...101,374,602 Ensembl chr 5:101,371,136...101,374,602
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Shh
sonic hedgehog signaling molecule
involved_in acts_upstream_of
ISS ISO
GO_REF:0000024 (PMID:10981962) (PMID:19273836)
UniProt RGD
PMID:10981962 PMID:19273836
GO_REF:0000024
NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170
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Stat5a
signal transducer and activator of transcription 5A
acts_upstream_of_or_within
ISO
MGI:103035 (PMID:15294943)
RGD
PMID:15294943
NCBI chr10:86,285,859...86,310,187
Ensembl chr10:85,785,537...85,809,866
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Stat5b
signal transducer and activator of transcription 5B
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:103036 (PMID:15294943)
Ensembl RGD
PMID:15294943
GO_REF:0000107
NCBI chr10:86,205,148...86,276,178
Ensembl chr10:85,705,670...85,775,668
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Tcf3
transcription factor 3
acts_upstream_of_or_within
ISO
MGI:2178112 (PMID:18958875)
RGD
PMID:18958875
NCBI chr 7:9,931,251...9,952,994
Ensembl chr 7:9,280,571...9,302,314
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Tp53
tumor protein p53
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:98159 (PMID:16357222)
Ensembl RGD
PMID:16357222
GO_REF:0000107
NCBI chr10:54,798,871...54,810,300
Ensembl chr10:54,300,048...54,311,524
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Wnt1
Wnt family member 1
acts_upstream_of_or_within
ISO
(PMID:11265645)
RGD
PMID:11265645
NCBI chr 7:131,817,558...131,821,605
Ensembl chr 7:129,938,604...129,942,651
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Wnt4
Wnt family member 4
acts_upstream_of_or_within
ISO
(PMID:11265645)
RGD
PMID:11265645
NCBI chr 5:154,797,245...154,818,565
Ensembl chr 5:149,514,018...149,532,859
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Zbtb1
zinc finger and BTB domain containing 1
acts_upstream_of_or_within
ISO
MGI:5300200 (PMID:22201126)
RGD
PMID:22201126
NCBI chr 6:100,832,506...100,864,019
Ensembl chr 6:95,096,387...95,118,996
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Zfp36l1
zinc finger protein 36, C3H type-like 1
involved_in
ISS ISO
GO_REF:0000024 UniProtKB:P23949 (PMID:20622884)
UniProt RGD
PMID:20622884
GO_REF:0000024
NCBI chr 6:104,663,396...104,669,815
Ensembl chr 6:98,930,718...98,935,748
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Zfp36l2
zinc finger protein 36, C3H type-like 2
involved_in
ISO
UniProtKB:P23950 (PMID:20622884)
RGD
PMID:20622884
NCBI chr 6:16,242,622...16,246,662
Ensembl chr 6:10,490,032...10,494,064
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Ccr6
C-C motif chemokine receptor 6
involved_in
ISO
(PMID:24638065)
RGD
PMID:24638065
NCBI chr 1:55,022,037...55,055,857
Ensembl chr 1:52,474,168...52,498,603
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Lig4
DNA ligase 4
acts_upstream_of_or_within
ISO
MGI:1857732 (PMID:10911993), (PMID:9823897)
RGD
PMID:9823897 PMID:10911993
NCBI chr16:86,220,345...86,228,930
Ensembl chr16:79,518,312...79,527,040
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Rag2
recombination activating 2
acts_upstream_of_or_within
ISO
MGI:1858556 (PMID:9875844)
RGD
PMID:9875844
NCBI chr 3:108,357,399...108,367,186
Ensembl chr 3:87,902,238...87,911,066
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Xrcc4
X-ray repair cross complementing 4
acts_upstream_of_or_within
ISO
MGI:1926771 (PMID:9875844)
RGD
PMID:9875844
NCBI chr 2:22,686,506...22,932,929
Ensembl chr 2:20,951,200...21,197,808
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Ccr6
C-C motif chemokine receptor 6
involved_in
ISO
(PMID:24638065)
RGD
PMID:24638065
NCBI chr 1:55,022,037...55,055,857
Ensembl chr 1:52,474,168...52,498,603
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Abl1
ABL proto-oncogene 1, non-receptor tyrosine kinase
acts_upstream_of_or_within
ISO
MGI:87860 (PMID:18025176)
RGD
PMID:18025176
NCBI chr 3:35,377,587...35,480,843
Ensembl chr 3:14,979,853...15,083,065
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Abl2
ABL proto-oncogene 2, non-receptor tyrosine kinase
acts_upstream_of_or_within
ISO
MGI:87859 (PMID:18025176)
RGD
PMID:18025176
NCBI chr13:71,223,902...71,319,770
Ensembl chr13:68,673,722...68,839,742
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Blm
BLM RecQ like helicase
acts_upstream_of_or_within
ISO
MGI:3053044|MGI:3663359 (PMID:17210642)
RGD
PMID:17210642
NCBI chr 1:143,819,072...143,905,300
Ensembl chr 1:134,409,857...134,484,312
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Nfatc3
nuclear factor of activated T-cells 3
involved_in
ISS ISO
GO_REF:0000024 (PMID:17579027)
UniProt RGD
PMID:17579027
GO_REF:0000024
NCBI chr19:50,870,464...50,944,992
Ensembl chr19:33,960,852...34,035,150
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Blm
BLM RecQ like helicase
acts_upstream_of
ISO
MGI:3053044|MGI:3663359 (PMID:17210642)
RGD
PMID:17210642
NCBI chr 1:143,819,072...143,905,300
Ensembl chr 1:134,409,857...134,484,312
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Clec4g
C-type lectin domain family 4, member G
acts_upstream_of
ISO
MGI:5510586 (PMID:23487419)
RGD
PMID:23487419
NCBI chr12:6,578,266...6,582,913
Ensembl chr12:1,780,371...1,784,985
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Erbb2
erb-b2 receptor tyrosine kinase 2
involved_in acts_upstream_of
IEA ISO
GO_REF:0000107 (PMID:16230479)
Ensembl RGD
PMID:16230479
GO_REF:0000107
NCBI chr10:83,907,491...83,931,365
Ensembl chr10:83,411,313...83,435,078
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Foxp3
forkhead box P3
acts_upstream_of
ISO
MGI:1857034 (PMID:16230479)
RGD
PMID:16230479
NCBI chr X:17,580,380...17,601,181
Ensembl chr X:14,908,494...14,923,838
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Ifnar2
interferon alpha and beta receptor subunit 2
acts_upstream_of_or_within
ISO
(PMID:11154225)
RGD
PMID:11154225
NCBI chr11:44,099,574...44,131,941
Ensembl chr11:30,613,767...30,668,124
G
Ripk2
receptor-interacting serine-threonine kinase 2
acts_upstream_of
ISO
MGI:2660793 (PMID:11894098)
RGD
PMID:11894098
NCBI chr 5:34,428,573...34,459,808
Ensembl chr 5:29,631,570...29,662,657
G
Wnt4
Wnt family member 4
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857453 (PMID:18617424)
Ensembl RGD
PMID:18617424
GO_REF:0000107
NCBI chr 5:154,797,245...154,818,565
Ensembl chr 5:149,514,018...149,532,859
G
Bmp4
bone morphogenetic protein 4
involved_in
ISS ISO IEA
GO_REF:0000024 (PMID:12421925) GO_REF:0000107
UniProt RGD Ensembl
PMID:12421925
GO_REF:0000024 GO_REF:0000107
NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306
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Cdkn2a
cyclin-dependent kinase inhibitor 2A
involved_in
ISO
(PMID:15964995)
RGD
PMID:15964995
NCBI chr 5:109,100,763...109,114,448
Ensembl chr 5:103,984,949...104,003,149
G
Clec4g
C-type lectin domain family 4, member G
acts_upstream_of_or_within
ISO
MGI:5510586 (PMID:23487419)
RGD
PMID:23487419
NCBI chr12:6,578,266...6,582,913
Ensembl chr12:1,780,371...1,784,985
G
Erbb2
erb-b2 receptor tyrosine kinase 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:16230479)
Ensembl RGD
PMID:16230479
GO_REF:0000107
NCBI chr10:83,907,491...83,931,365
Ensembl chr10:83,411,313...83,435,078
G
Ihh
Indian hedgehog signaling molecule
involved_in
ISO
(PMID:19109233)
RGD
PMID:19109233
NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532
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Tmem131l
transmembrane 131 like
involved_in
ISO
(PMID:23690469)
RGD
PMID:23690469
NCBI chr 2:169,257,659...169,391,773
Ensembl chr 2:169,258,289...169,391,711
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Ptpn2
protein tyrosine phosphatase, non-receptor type 2
involved_in
ISO ISS IEA
(PMID:22080863) GO_REF:0000024 GO_REF:0000107
RGD UniProt Ensembl
PMID:22080863
GO_REF:0000024 GO_REF:0000107
NCBI chr18:63,498,890...63,564,571
Ensembl chr18:61,229,014...61,294,627
G
Bmp4
bone morphogenetic protein 4
involved_in
ISO
(PMID:12421925)
RGD
PMID:12421925
NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306
G
Foxj1
forkhead box J1
involved_in
IEA ISO
GO_REF:0000107 (PMID:16339515)
Ensembl RGD
PMID:16339515
GO_REF:0000107
NCBI chr10:102,065,163...102,069,945
Ensembl chr10:101,566,304...101,570,237
G
Ihh
Indian hedgehog signaling molecule
involved_in
ISO
(PMID:19109233)
RGD
PMID:19109233
NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532
G
Nfkbid
NFKB inhibitor delta
acts_upstream_of_or_within
ISO
(PMID:11931770)
RGD
PMID:11931770
NCBI chr 1:94,808,459...94,824,726
Ensembl chr 1:85,680,861...85,690,447
G
Rag2
recombination activating 2
IMP
RGD
PMID:30206106
RGD:38508903
NCBI chr 3:108,357,399...108,367,186
Ensembl chr 3:87,902,238...87,911,066
G
Shh
sonic hedgehog signaling molecule
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:10981962)
Ensembl RGD
PMID:10981962
GO_REF:0000107
NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170
G
Zc3h8
zinc finger CCCH type containing 8
involved_in
ISO
(PMID:12153508)
RGD
PMID:12153508
NCBI chr 3:136,629,998...136,646,998
Ensembl chr 3:116,176,798...116,193,787
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Aire
autoimmune regulator
acts_upstream_of_or_within involved_in
ISO IBA
MGI:1277186 (PMID:23382543) GO_REF:0000033
RGD GO_Central
PMID:23382543
GO_REF:0000033
NCBI chr20:10,635,775...10,650,709
Ensembl chr20:10,636,123...10,651,060
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Atg5
autophagy related 5
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1338803|MGI:3612279 (PMID:23382543)
Ensembl RGD
PMID:23382543
GO_REF:0000107
NCBI chr20:49,380,835...49,471,826
Ensembl chr20:47,798,290...47,889,209
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Ccr7
C-C motif chemokine receptor 7
involved_in
ISO
(PMID:17785582)
RGD
PMID:17785582
NCBI chr10:84,594,399...84,604,514
Ensembl chr10:84,097,381...84,108,309
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Cd28
Cd28 molecule
acts_upstream_of_or_within
ISO
MGI:1857150 (PMID:10429671)
RGD
PMID:10429671
NCBI chr 9:69,660,316...69,689,192
Ensembl chr 9:62,166,192...62,194,685
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Cd3e
CD3 epsilon subunit of T-cell receptor complex
acts_upstream_of_or_within
ISO
(PMID:7630421)
RGD
PMID:7630421
NCBI chr 8:54,200,617...54,211,770
Ensembl chr 8:45,303,852...45,315,022
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Cd74
CD74 molecule
acts_upstream_of_or_within
ISO
MGI:1927205 (PMID:7679955)
RGD
PMID:7679955
NCBI chr18:56,527,071...56,536,406
Ensembl chr18:54,256,778...54,266,003
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Dock2
dedicator of cytokinesis 2
acts_upstream_of_or_within
ISO
MGI:2152031 (PMID:12871644)
RGD
PMID:12871644
NCBI chr10:18,827,237...19,244,832
Ensembl chr10:18,827,239...19,244,808
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Fas
Fas cell surface death receptor
acts_upstream_of_or_within
ISO
MGI:1856334 (PMID:10429671)
RGD
PMID:10429671
NCBI chr 1:241,212,155...241,245,774
Ensembl chr 1:231,798,960...231,832,591
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Gli3
GLI family zinc finger 3
involved_in
ISO
(PMID:19667090)
RGD
PMID:19667090
NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712
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Mink1
misshapen-like kinase 1
acts_upstream_of_or_within
ISO
(PMID:15608642)
RGD
PMID:15608642
NCBI chr10:55,776,879...55,829,406
Ensembl chr10:55,278,391...55,330,782
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Ptprc
protein tyrosine phosphatase, receptor type, C
acts_upstream_of_or_within
ISO
MGI:1857277 (PMID:8666928)
RGD
PMID:8666928
NCBI chr13:52,147,717...52,259,810
Ensembl chr13:49,596,193...49,708,692
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Shh
sonic hedgehog signaling molecule
involved_in
IEA ISO ISS
GO_REF:0000107 (PMID:17227833) GO_REF:0000024
Ensembl RGD UniProt
PMID:17227833
GO_REF:0000024 GO_REF:0000107
NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170
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Spn
sialophorin
acts_upstream_of_or_within
ISO
MGI:1857246 (PMID:10429671)
RGD
PMID:10429671
NCBI chr 1:191,177,449...191,190,115
Ensembl chr 1:181,746,429...181,759,628
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Zap70
zeta chain of T cell receptor associated protein kinase 70
acts_upstream_of_or_within
ISO
MGI:2677447 (PMID:7630421)
RGD
PMID:7630421
NCBI chr 9:46,485,605...46,507,552
Ensembl chr 9:38,989,750...39,011,700
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Blm
BLM RecQ like helicase
acts_upstream_of_or_within
ISO
MGI:3053044|MGI:3663359 (PMID:17210642)
RGD
PMID:17210642
NCBI chr 1:143,819,072...143,905,300
Ensembl chr 1:134,409,857...134,484,312
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Bmi1
BMI1 proto-oncogene, polycomb ring finger
involved_in
ISO
(PMID:15964995)
RGD
PMID:15964995
NCBI chr17:86,240,683...86,250,044
Ensembl chr17:81,332,214...81,388,690
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Foxp3
forkhead box P3
acts_upstream_of_or_within
ISO
MGI:1857034 (PMID:16230479)
RGD
PMID:16230479
NCBI chr X:17,580,380...17,601,181
Ensembl chr X:14,908,494...14,923,838
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Il1a
interleukin 1 alpha
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 3:136,979,804...136,990,236
Ensembl chr 3:116,526,604...116,536,822
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Il1b
interleukin 1 beta
involved_in
IDA IBA
GO_REF:0000033
GO_Central RGD
PMID:8590311
GO_REF:0000033, RGD:7401228
NCBI chr 3:137,030,200...137,036,581
Ensembl chr 3:116,577,010...116,583,415
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Ripk2
receptor-interacting serine-threonine kinase 2
acts_upstream_of_or_within
ISO
MGI:2660793 (PMID:11894098)
RGD
PMID:11894098
NCBI chr 5:34,428,573...34,459,808
Ensembl chr 5:29,631,570...29,662,657
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Shh
sonic hedgehog signaling molecule
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:14764698), (PMID:19273836)
UniProt Ensembl RGD
PMID:14764698 PMID:19273836
GO_REF:0000024 GO_REF:0000107
NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170
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Ada
adenosine deaminase
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857117|MGI:2683027 (PMID:11067867), (PMID:11435465), (PMID:12163459), (PMID:16670300)
Ensembl RGD
PMID:11067867 PMID:11435465 PMID:12163459 PMID:16670300
GO_REF:0000107
NCBI chr 3:172,818,174...172,842,283
Ensembl chr 3:152,398,747...152,447,088
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Adam8
ADAM metallopeptidase domain 8
involved_in
ISO
(PMID:20856819)
RGD
PMID:20856819
NCBI chr 1:204,206,206...204,218,988
Ensembl chr 1:194,770,060...194,788,801
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Egr3
early growth response 3
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:21737317)
Ensembl RGD
PMID:21737317
GO_REF:0000107
NCBI chr15:51,560,482...51,565,778
Ensembl chr15:45,150,567...45,154,627
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Ihh
Indian hedgehog signaling molecule
involved_in
ISO
(PMID:19109233)
RGD
PMID:19109233
NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532
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Il2rg
interleukin 2 receptor subunit gamma
acts_upstream_of_or_within
ISO
MGI:1857455|MGI:2429736 (PMID:9252128), (PMID:9916699)
RGD
PMID:9252128 PMID:9916699
NCBI chr X:70,435,340...70,439,052
Ensembl chr X:66,392,542...66,399,823
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Il7r
interleukin 7 receptor
acts_upstream_of_or_within
ISO
MGI:1857198 (PMID:9215626)
RGD
PMID:9215626
NCBI chr 2:60,179,561...60,204,937
Ensembl chr 2:58,454,217...58,477,757
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Rasgrp1
RAS guanyl releasing protein 1
involved_in
IEA ISO
GO_REF:0000107 (PMID:11017103)
Ensembl RGD
PMID:11017103
GO_REF:0000107
NCBI chr 3:124,624,039...124,684,079
Ensembl chr 3:104,170,013...104,230,056
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Shh
sonic hedgehog signaling molecule
involved_in
ISS ISO IEA
GO_REF:0000024 (PMID:19109233) GO_REF:0000107
UniProt RGD Ensembl
PMID:19109233
GO_REF:0000024 GO_REF:0000107
NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170
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Vnn1
vanin 1
involved_in
ISO
(PMID:8934567)
RGD
PMID:8934567
NCBI chr 1:23,356,324...23,366,629
Ensembl chr 1:21,537,094...21,547,395
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Cd1d1
CD1d1 molecule
acts_upstream_of_or_within
ISO
MGI:2180711 (PMID:9133426)
RGD
PMID:9133426
NCBI chr 2:174,721,522...174,725,029
Ensembl chr 2:172,423,582...172,427,089
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Cd3d
CD3 delta subunit of T-cell receptor complex
involved_in
ISS IBA ISO
GO_REF:0000024 GO_REF:0000033 (PMID:9135151)
UniProt GO_Central RGD
PMID:9135151
GO_REF:0000024 GO_REF:0000033
NCBI chr 8:54,184,573...54,190,112
Ensembl chr 8:45,288,749...45,301,809
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Cd3e
CD3 epsilon subunit of T-cell receptor complex
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 8:54,200,617...54,211,770
Ensembl chr 8:45,303,852...45,315,022
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Cd3g
CD3 gamma subunit of T-cell receptor complex
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 8:54,177,572...54,184,087
Ensembl chr 8:45,281,204...45,287,147
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Cd74
CD74 molecule
acts_upstream_of_or_within
ISO
MGI:1927205|MGI:1927530 (PMID:7679955), (PMID:8598040), (PMID:9432982)
RGD
PMID:7679955 PMID:8598040 PMID:9432982
NCBI chr18:56,527,071...56,536,406
Ensembl chr18:54,256,778...54,266,003
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Dock2
dedicator of cytokinesis 2
acts_upstream_of_or_within
ISO
MGI:2152031 (PMID:12871644)
RGD
PMID:12871644
NCBI chr10:18,827,237...19,244,832
Ensembl chr10:18,827,239...19,244,808
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Itpkb
inositol-trisphosphate 3-kinase B
acts_upstream_of_or_within
ISO
MGI:3039799 (PMID:15064401)
RGD
PMID:15064401
NCBI chr13:94,601,072...94,696,180
Ensembl chr13:92,069,216...92,162,004
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Nfatc3
nuclear factor of activated T-cells 3
involved_in
ISS ISO
GO_REF:0000024 (PMID:17579027)
UniProt RGD
PMID:17579027
GO_REF:0000024
NCBI chr19:50,870,464...50,944,992
Ensembl chr19:33,960,852...34,035,150
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Ptprc
protein tyrosine phosphatase, receptor type, C
acts_upstream_of_or_within
ISO
MGI:1857277 (PMID:8666928)
RGD
PMID:8666928
NCBI chr13:52,147,717...52,259,810
Ensembl chr13:49,596,193...49,708,692
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RT1-DMa
RT1 class II, locus DMa
acts_upstream_of_or_within
ISO
MGI:1861933|MGI:2384509|MGI:2652160 (PMID:8598040), (PMID:8598041), (PMID:8638109), (PMID:9432982)
RGD
PMID:8598040 PMID:8598041 PMID:8638109 PMID:9432982
NCBI chr20:4,708,932...4,712,335
Ensembl chr20:4,707,028...4,710,432
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Shh
sonic hedgehog signaling molecule
involved_in
ISS ISO IEA
GO_REF:0000024 (PMID:17227833) GO_REF:0000107
UniProt RGD Ensembl
PMID:17227833
GO_REF:0000024 GO_REF:0000107
NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170
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Srf
serum response factor
acts_upstream_of_or_within
ISO
MGI:2449947|MGI:3046779 (PMID:21098124)
RGD
PMID:21098124
NCBI chr 9:21,924,050...21,933,338
Ensembl chr 9:14,426,472...14,435,733
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Stk11
serine/threonine kinase 11
acts_upstream_of_or_within
ISO
MGI:2386448|MGI:2387402|MGI:3054844 (PMID:21487392)
RGD
PMID:21487392
NCBI chr 7:10,225,204...10,241,965
Ensembl chr 7:9,575,269...9,591,315
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Zap70
zeta chain of T cell receptor associated protein kinase 70
acts_upstream_of_or_within
ISO
(PMID:7630421) MGI:2677447 (PMID:7630421)
RGD
PMID:7630421
NCBI chr 9:46,485,605...46,507,552
Ensembl chr 9:38,989,750...39,011,700
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Cd1d1
CD1d1 molecule
involved_in
ISO
(PMID:11550008)
RGD
PMID:11550008
NCBI chr 2:174,721,522...174,725,029
Ensembl chr 2:172,423,582...172,427,089
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Tnfrsf9
TNF receptor superfamily member 9
acts_upstream_of_or_within
ISO
(PMID:8405064)
RGD
PMID:8405064
NCBI chr 5:166,664,494...166,690,834
Ensembl chr 5:161,381,662...161,408,000
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Tnfsf9
TNF superfamily member 9
acts_upstream_of_or_within
ISO
(PMID:8405064)
RGD
PMID:8405064
NCBI chr 9:2,031,011...2,033,345
Ensembl chr 9:1,944,017...1,946,345
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Foxn1
forkhead box N1
involved_in
ISO
(PMID:24184560)
RGD
PMID:24184560
NCBI chr10:63,749,461...63,778,468
Ensembl chr10:63,251,400...63,273,710
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Tox
thymocyte selection-associated high mobility group box
involved_in
ISO
(PMID:18195075)
RGD
PMID:18195075
NCBI chr 5:24,672,487...24,968,754
Ensembl chr 5:19,874,467...20,171,272
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Ada
adenosine deaminase
IMP
RGD
PMID:3876160
RGD:152995412
NCBI chr 3:172,818,174...172,842,283
Ensembl chr 3:152,398,747...152,447,088
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Adrm1
ADRM1 26S proteasome ubiquitin receptor
involved_in
ISO
(PMID:21048919)
RGD
PMID:21048919
NCBI chr 3:167,265,435...167,270,197
Ensembl chr 3:167,265,296...167,270,195
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Ankle1
ankyrin repeat and LEM domain containing 1
NOT|involved_in
ISO
(PMID:27010503)
RGD
PMID:27010503
NCBI chr16:18,109,865...18,116,999
Ensembl chr16:18,076,492...18,083,729
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Clptm1
CLPTM1 regulator of GABA type A receptor forward trafficking
involved_in
ISO
(PMID:9218588)
RGD
PMID:9218588
NCBI chr 1:88,417,447...88,449,047
Ensembl chr 1:79,289,477...79,321,092
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Foxn1
forkhead box N1
acts_upstream_of_or_within
ISO
MGI:5297717 (PMID:22072979)
RGD
PMID:22072979
NCBI chr10:63,749,461...63,778,468
Ensembl chr10:63,251,400...63,273,710
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Lgals9
galectin 9
NOT|involved_in
ISO
(PMID:25065622)
RGD
PMID:25065622
NCBI chr10:64,405,044...64,428,249
Ensembl chr10:63,907,018...63,930,045
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Sos1
SOS Ras/Rac guanine nucleotide exchange factor 1
acts_upstream_of_or_within
ISO
MGI:98355 (PMID:24043312)
RGD
PMID:24043312
NCBI chr 6:20,286,117...20,363,350
Ensembl chr 6:14,533,360...14,611,107
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Sos2
SOS Ras/Rho guanine nucleotide exchange factor 2
acts_upstream_of_or_within
ISO
MGI:98354 (PMID:24043312)
RGD
PMID:24043312
NCBI chr 6:93,778,971...93,892,161
Ensembl chr 6:88,042,966...88,156,692
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Zeb1
zinc finger E-box binding homeobox 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857515|MGI:1857799 (PMID:9126927), (PMID:9389660)
Ensembl RGD
PMID:9126927 PMID:9389660
GO_REF:0000107
NCBI chr17:56,644,397...56,811,155
Ensembl chr17:51,948,948...52,115,214
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Card11
caspase recruitment domain family, member 11
acts_upstream_of_or_within
ISO
MGI:3039682 (PMID:12867038)
RGD
PMID:12867038
NCBI chr12:18,735,088...18,872,045
Ensembl chr12:13,621,087...13,758,112
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Gata3
GATA binding protein 3
acts_upstream_of_or_within
ISO
MGI:2683927 (PMID:14670303)
RGD
PMID:14670303
NCBI chr17:73,544,234...73,575,670
Ensembl chr17:68,643,873...68,665,391
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Itpkb
inositol-trisphosphate 3-kinase B
acts_upstream_of_or_within
ISO
MGI:2680720 (PMID:14517551)
RGD
PMID:14517551
NCBI chr13:94,601,072...94,696,180
Ensembl chr13:92,069,216...92,162,004
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Jag2
jagged canonical Notch ligand 2
involved_in
IEA ISS ISO
GO_REF:0000107 PMID:10383933 (PMID:10383933)
Ensembl RGD
PMID:10383933 PMID:10383933
GO_REF:0000107, RGD:8553281
NCBI chr 6:137,804,133...137,826,738
Ensembl chr 6:131,983,056...132,005,818
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Zap70
zeta chain of T cell receptor associated protein kinase 70
acts_upstream_of_or_within
ISO
MGI:2677447|MGI:3526403 (PMID:9208839)
RGD
PMID:9208839
NCBI chr 9:46,485,605...46,507,552
Ensembl chr 9:38,989,750...39,011,700
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