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ONTOLOGY REPORT - ANNOTATIONS

Term:protein-containing complex
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Accession:GO:0032991 term browser browse the term
Definition:A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
Comment:A protein complex in this context is meant as a stable set of interacting proteins which can be co-purified by an acceptable method, and where the complex has been shown to exist as an isolated, functional unit in vivo. Acceptable experimental methods include stringent protein purification followed by detection of protein interaction. The following methods should be considered non-acceptable: simple immunoprecipitation, pull-down experiments from cell extracts without further purification, colocalization and 2-hybrid screening. Interactions that should not be captured as protein complexes include: 1) enzyme/substrate, receptor/ligand or any similar transient interactions, unless these are a critical part of the complex assembly or are required e.g. for the receptor to be functional; 2) proteins associated in a pull-down/co-immunoprecipitation assay with no functional link or any evidence that this is a defined biological entity rather than a loose-affinity complex; 3) any complex where the only evidence is based on genetic interaction data; 4) partial complexes, where some subunits (e.g. transmembrane ones) cannot be expressed as recombinant proteins and are excluded from experiments (in this case, independent evidence is necessary to find out the composition of the full complex, if known). Interactions that may be captured as protein complexes include: 1) enzyme/substrate or receptor/ligand if the complex can only assemble and become functional in the presence of both classes of subunits; 2) complexes where one of the members has not been shown to be physically linked to the other(s), but is a homologue of, and has the same functionality as, a protein that has been experimentally demonstrated to form a complex with the other member(s); 3) complexes whose existence is accepted based on localization and pharmacological studies, but for which experimental evidence is not yet available for the complex as a whole.
Synonyms:exact_synonym: macromolecular complex;   macromolecule complex
 narrow_synonym: protein complex;   protein-protein complex
 alt_id: GO:0043234


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      cellular_component 20817
        protein-containing complex 6437
          3M complex 5
          AIP1-IRE1 complex 2
          ASAP complex 5
          ATPase inhibitor complex + 3
          Aim21-Tda2 complex 0
          AnxA2-p11 complex 2
          Arp2/3 protein complex 12
          B800-820 antenna complex 0
          B800-850 antenna complex 0
          B875 antenna complex 0
          BBSome 8
          BID-BCL-xl complex 0
          Bcl-2 family protein complex + 10
          CAF-1 complex 3
          CNTFR-CLCF1 complex 2
          CRLF-CLCF1 complex 2
          CSF1-CSF1R complex 2
          CUGBP1-eIF2 complex 0
          Cdc24p-Far1p-Gbetagamma complex 0
          Cvt complex 0
          DNA bending complex + 0
          DNA recombinase mediator complex + 8
          DNA replication factor C complex + 5
          DNA topoisomerase III-beta-TDRD3 complex 2
          DiaA complex 0
          DnaB-DnaC complex 0
          Dom34-Hbs1 complex 2
          Dxr protein complex 0
          EARP complex 5
          EDS1 disease-resistance complex 0
          ER membrane insertion complex + 12
          ESCRT complex + 31
          F-actin capping protein complex + 9
          FAL1-SGD1 complex 0
          FAR/SIN/STRIPAK complex 17
          FHF complex 5
          G-protein beta/gamma-Btk complex 0
          G-protein beta/gamma-Raf-1 complex 0
          G-protein beta/gamma-subunit complex 2
          GAIT complex 5
          GATOR1 complex 5
          GATOR2 complex 10
          GLI-SUFU complex 3
          H-NS-Hha complex 0
          HICS complex 0
          HIR complex 1
          IKKalpha-IKKalpha complex 0
          IRE1-RACK1-PP2A complex 2
          KICSTOR complex 4
          Kelch-containing formin regulatory complex 0
          Kibra-Ex-Mer complex 0
          Knl1/Spc105 complex 2
          Lsd1/2 complex 0
          MAD1 complex 1
          MAML1-RBP-Jkappa- ICN1 complex 4
          MCM complex + 12
          MCM core complex 0
          MECO complex 0
          MIH complex 0
          MKS complex 14
          MMXD complex 5
          MWP complex 0
          Mcs4 RR-MAPKKK complex 0
          Mis6-Sim4 complex 1
          Myo2p-Vac17p-Vac8p transport complex 0
          NHE3/E3KARP/ACTN4 complex 0
          NOS2-CD74 complex 1
          NPHP complex 0
          NVT complex 0
          Ndc80 complex 4
          Nicalin-NOMO complex 0
          Nrd1 complex 0
          Nsk1-Dlc1 complex 0
          PCSK9-AnxA2 complex 2
          PCSK9-LDLR complex 2
          PET complex + 3
          PTEX complex 0
          PYM-mago-Y14 complex 0
          Par3-APC-KIF3A complex 0
          Prp19 complex 15
          R2TP complex 6
          RAVE complex 3
          RNA decapping complex 0
          RPAP3/R2TP/prefoldin-like complex 12
          RQC complex 4
          RQC-trigger complex 1
          RZZ complex 3
          Rad17 RFC-like complex 1
          Ras guanyl-nucleotide exchange factor complex 0
          RasGAP-Fyn-Lyn-Yes complex 0
          RecFOR complex 0
          Rvs161p-Rvs167p complex 0
          S100A8 complex 0
          SCAR complex 12
          SIN/MEN signaling complex + 0
          SKA complex 3
          SLAC complex 0
          SMAD protein complex + 10
          Scrib-APC complex 0
          Scrib-APC-beta-catenin complex 3
          Seh1-associated complex + 14
          Shu complex 2
          Sid2-Mob1 complex 0
          Ski complex 3
          Sm-like protein family complex + 104
          SsuD-SsuE complex 0
          Ste12p-Dig1p-Dig2p complex 0
          Syp1 complex 0
          TAM protein secretion complex 0
          TBK1-IKKE-DDX3 complex 0
          TCR signalosome 2
          TOC-TIC supercomplex I 0
          TRAF2-GSTP1 complex 2
          TSC1-TSC2 complex 5
          TTT Hsp90 cochaperone complex 3
          Tec1p-Ste12p-Dig1p complex 0
          UFD1-NPL4 complex 2
          USH2 complex 4
          VCP-NSFL1C complex 2
          VRK3/VHR/ERK complex 0
          Vma12-Vma22 assembly complex 0
          WASH complex 13
          Wnt signalosome 9
          Y-shaped link 0
          Yae1-Lto1 complex 0
          actin cytoskeleton-regulatory complex 0
          activin complex + 1
          alkyl hydroperoxide reductase complex 0
          amyloid-beta complex 1
          angiogenin-PRI complex 2
          apoptosome 4
          axonemal heterotrimeric kinesin-II complex 0
          axonemal nexin link 0
          bub1-bub3 complex 0
          bursicon neuropeptide hormone complex 0
          calprotectin complex 2
          canonical inflammasome complex + 28
          catalytic complex + 1837
          cohesin complex + 11
          collagen trimer + 62
          complement component C1 complex 1
          complement component C1q complex 3
          condensin complex 8
          counting factor complex 0
          dimethyl sulfoxide reductase complex 0
          divisome complex + 0
          eisosome filament 0
          electron transfer flavoprotein complex + 2
          endoplasmic reticulum protein-containing complex + 130
          enzyme activator complex + 13
          eukaryotic translation elongation factor 1 complex 6
          eukaryotic translation initiation factor 2 complex 6
          eukaryotic translation initiation factor 2B complex 5
          eukaryotic translation initiation factor 3 complex + 16
          exomer complex 0
          extracellular exosome complex + 0
          ferritin complex 2
          fibrinogen complex 6
          filamentous actin 37
          gamma-tubulin complex + 15
          glideosome 0
          glycoprotein complex + 23
          growth factor complex + 8
          haptoglobin-hemoglobin complex 13
          hemidesmosome associated protein complex + 0
          hemoglobin complex 15
          hemozoin formation complex 0
          histone mRNA stem-loop binding complex 2
          iRhom2/ADAM17 sheddase complex 0
          immunoglobulin complex + 117
          inhibin complex + 2
          inner kinetochore + 18
          interferon regulatory factor complex + 0
          interleukin-12 complex 2
          interleukin-23 complex 2
          interleukin-27 complex 0
          interleukin-35 complex 0
          intracellular protein-containing complex + 956
          intraciliary transport particle + 29
          intraciliary transport particle A 8
          intraciliary transport particle B 22
          iron-sulfur cluster assembly complex + 17
          junctional membrane complex 9
          laminin complex + 10
          large latent transforming growth factor-beta complex 1
          larval serum protein complex 0
          lateral cortical node 0
          light-harvesting complex + 0
          lymphotoxin complex 0
          mCRD-mediated mRNA stability complex 5
          matrilin complex 3
          membrane fusion priming complex 0
          membrane protein complex + 1371
          metallochaperone complex + 0
          methionyl glutamyl tRNA synthetase complex 0
          methyl accepting chemotaxis protein complex 0
          microtubule associated complex + 150
          mismatch repair complex + 7
          mitochondrial protein-containing complex + 181
          mitotic spindle assembly checkpoint MAD1-MAD2 complex 2
          monopolin complex 0
          muscle thin filament tropomyosin 0
          myosin complex + 59
          nascent polypeptide-associated complex 7
          non-canonical inflammasome complex 1
          nuclear protein-containing complex + 1305
          nucleocytoplasmic transport complex + 12
          nucleotide-excision repair, DNA damage recognition complex + 0
          origin recognition complex + 8
          outer dynein arm docking complex 2
          outer kinetochore + 24
          paraferritin complex 1
          peptidase inhibitor complex + 10
          piccolo histone acetyltransferase complex + 4
          pituitary gonadotropin complex + 2
          polarisome + 0
          polkadots 2
          polycystin complex 2
          prefoldin complex 8
          procentriole replication complex 6
          proteasome accessory complex + 30
          proteasome activator complex 7
          proteasome core complex, alpha-subunit complex + 11
          proteasome core complex, beta-subunit complex + 12
          proteasome regulatory particle + 23
          proteasome regulatory particle, base subcomplex + 12
          proteasome regulatory particle, lid subcomplex + 8
          proteasome-activating nucleotidase complex 0
          protein complex involved in cell adhesion + 50
          protein phosphatase inhibitor complex 0
          protein-DNA complex + 233
          protein-DNA-RNA complex + 0
          protein-carbohydrate complex + 0
          protein-lipid complex + 34
          protein-lipid-RNA complex + 0
          pyroptosome complex 0
          radial spoke + 12
          radial spoke base + 0
          radial spoke head + 4
          radial spoke neck 0
          radial spoke stalk 1
          raps-insc complex 0
          receptor complex + 445
          reelin complex 1
          replication inhibiting complex + 0
          respiratory chain complex + 148
          ribonucleoprotein complex + 1245
          septin complex + 15
          single-stranded DNA-binding protein complex 0
          spectrin 7
          spitzenkorper 0
          stereocilia ankle link complex 6
          steroid hormone aporeceptor complex 0
          subcortical maternal complex 4
          thrombospondin complex 0
          titin-telethonin complex 0
          trans-synaptic protein complex 4
          transcription regulator complex + 515
          transforming growth factor beta complex 0
          translation release factor complex 3
          translation repressor complex + 0
          transporter complex + 559
          troponin complex + 8
          tubulin complex 1
          tubulin folding cofactor complex 0
          tubulobulbar complex + 3
          type I protein secretion system complex 0
          type II protein secretion system complex 0
          type III protein secretion system complex 0
          type IV secretion system complex 0
          type V protein secretion system complex 0
          type VI protein secretion system complex 0
          vesicle tethering complex + 74
          viral integration complex 0
          viral portal complex 0
          viral scaffold 0
          viral terminase complex + 0
          viral terminase, small subunit 0
          viral transcriptional complex 0
          zona pellucida receptor complex 11
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