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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of collagen biosynthetic process
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Accession:GO:0032965 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals.
Synonyms:exact_synonym: regulation of collagen anabolism;   regulation of collagen biosynthesis;   regulation of collagen formation;   regulation of collagen synthesis


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negative regulation of collagen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADORA2B adenosine A2b receptor ISO RGD PMID:9535419 RGD:2316149 NCBI chr17:34,849,466...34,880,088 JBrowse link
G AGER advanced glycosylation end-product specific receptor ISO RGD PMID:21872885 RGD:7245949 NCBI chr 6:31,828,363...31,831,981
Ensembl chr 6:32,708,251...32,711,641 		JBrowse link
G CIITA class II major histocompatibility complex transactivator involved_in ISO (PMID:19041327) BHF-UCL PMID:19041327 NCBI chr16:9,819,440...9,885,379
Ensembl chr16:11,041,434...11,090,485 		JBrowse link
G CYGB cytoglobin ISO RGD PMID:20719976 RGD:9685174 NCBI chr17:70,475,651...70,485,987
Ensembl chr17:76,167,947...76,179,412 		JBrowse link
G CYP2J2 cytochrome P450 family 2 subfamily J member 2 ISO RGD PMID:25840911 PMID:29656108 RGD:12904676 RGD:150520032 NCBI chr 1:59,151,079...59,184,625
Ensembl chr 1:60,856,269...60,889,810 		JBrowse link
G CYP7A1 cytochrome P450 family 7 subfamily A member 1 ISO RGD PMID:15521018 RGD:15045602 NCBI chr 8:54,942,509...54,952,500
Ensembl chr 8:56,593,799...56,604,037 		JBrowse link
G EMILIN1 elastin microfibril interfacer 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:27,077,551...27,085,437
Ensembl chr2A:27,166,747...27,174,525 		JBrowse link
G ERRFI1 ERBB receptor feedback inhibitor 1 ISO RGD PMID:19204184 RGD:9685562 NCBI chr 1:6,771,619...6,786,217
Ensembl chr 1:8,011,848...8,033,674 		JBrowse link
G FN1 fibronectin 1 ISO RGD PMID:15980055 RGD:1625201 NCBI chr2B:102,623,568...102,698,747
Ensembl chr2B:221,208,431...221,284,003 		JBrowse link
G GOT1 glutamic-oxaloacetic transaminase 1 ISO RGD PMID:26880260 RGD:13504840 NCBI chr10:96,012,345...96,046,266
Ensembl chr10:99,506,205...99,540,178 		JBrowse link
G IL6 interleukin 6 involved_in ISO (PMID:12419823) BHF-UCL PMID:12419823 NCBI chr 7:23,415,922...23,420,767 JBrowse link
G IL6R interleukin 6 receptor involved_in ISO (PMID:12419823) BHF-UCL PMID:12419823 NCBI chr 1:129,761,914...129,824,386
Ensembl chr 1:133,374,078...133,433,089 		JBrowse link
G KLF15 KLF transcription factor 15 ISO RGD PMID:25633973 RGD:596933353 NCBI chr 3:123,395,678...123,410,514
Ensembl chr 3:130,712,599...130,724,530 		JBrowse link
G NOTCH1 notch receptor 1 ISO RGD PMID:28100501 RGD:152995503 NCBI chr 9:107,568,670...107,621,032
Ensembl chr 9:136,544,639...136,598,740 		JBrowse link
G NPPC natriuretic peptide C ISO RGD PMID:12746286 RGD:1580115 NCBI chr2B:119,148,774...119,153,381
Ensembl chr2B:237,936,939...237,941,244 		JBrowse link
G NR1H4 nuclear receptor subfamily 1 group H member 4 ISO RGD PMID:15980055 RGD:1625201 NCBI chr12:98,052,778...98,144,085
Ensembl chr12:101,457,885...101,548,058 		JBrowse link
G PPARD peroxisome proliferator activated receptor delta ISO RGD PMID:17346664 RGD:2324888 NCBI chr 6:34,903,798...34,987,208
Ensembl chr 6:36,003,988...36,081,132 		JBrowse link
G PPARG peroxisome proliferator activated receptor gamma ISO RGD PMID:16202214 RGD:8553021 NCBI chr 3:12,215,322...12,361,669
Ensembl chr 3:12,622,397...12,705,060 		JBrowse link
G RAP1A RAP1A, member of RAS oncogene family ISO RGD PMID:22012077 RGD:9850086 NCBI chr 1:114,279,255...114,376,977
Ensembl chr 1:125,971,598...125,994,813 		JBrowse link
G RAPGEF3 Rap guanine nucleotide exchange factor 3 ISO RGD PMID:22012077 RGD:9850086 NCBI chr12:40,974,756...40,999,471
Ensembl chr12:41,848,785...41,873,252 		JBrowse link
positive regulation of collagen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR1B activin A receptor type 1B ISO RGD PMID:27477354 RGD:151665478 NCBI chr12:36,765,655...36,811,355
Ensembl chr12:37,541,867...37,566,660 		JBrowse link
G ARRB2 arrestin beta 2 ISO RGD PMID:28274926 RGD:13506828 NCBI chr17:4,766,616...4,777,253
Ensembl chr17:4,757,048...4,767,517 		JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752 		JBrowse link
G CBX8 chromobox 8 ISO RGD PMID:23572236 RGD:9586727 NCBI chr17:73,874,618...73,877,347
Ensembl chr17:79,410,967...79,413,691 		JBrowse link
G CCL2 C-C motif chemokine ligand 2 ISO RGD PMID:8663511 RGD:8549527 NCBI chr17:22,528,154...22,530,091
Ensembl chr17:22,820,890...22,823,384 		JBrowse link
G CCN2 cellular communication network factor 2 ISO RGD PMID:19570811 RGD:2314490 NCBI chr 6:129,729,572...129,733,113
Ensembl chr 6:133,836,319...133,842,077 		JBrowse link
G CREB3L1 cAMP responsive element binding protein 3 like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:46,236,384...46,280,145
Ensembl chr11:46,788,561...46,830,246 		JBrowse link
G DDR2 discoidin domain receptor tyrosine kinase 2 ISO RGD PMID:24938620 PMID:26674152 RGD:11554781 RGD:150429973 NCBI chr 1:138,048,730...138,200,426
Ensembl chr 1:141,932,158...141,990,766 		JBrowse link
G DICER1 dicer 1, ribonuclease III ISO RGD PMID:24337369 RGD:150340618 NCBI chr14:75,709,029...75,780,779
Ensembl chr14:95,036,385...95,107,940 		JBrowse link
G ENG endoglin ISO RGD PMID:20156938 RGD:7257540 NCBI chr 9:98,934,080...98,973,862
Ensembl chr 9:127,605,608...127,644,641 		JBrowse link
G EP300 E1A binding protein p300 ISO RGD PMID:18292803 RGD:2312266 NCBI chr22:21,986,467...22,076,921
Ensembl chr22:40,079,503...40,168,604 		JBrowse link
G F2 coagulation factor II, thrombin involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:46,669,925...46,690,391
Ensembl chr11:47,227,891...47,249,157 		JBrowse link
G F2R coagulation factor II thrombin receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:38,462,521...38,478,882
Ensembl chr 5:39,110,170...39,129,688
Ensembl chr 5:39,110,170...39,129,688 		JBrowse link
G GLI2 GLI family zinc finger 2 ISO RGD PMID:26823780 RGD:155791684 NCBI chr2B:7,665,403...7,922,840
Ensembl chr2B:121,303,831...121,497,442 		JBrowse link
G IHH Indian hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr2B:106,312,472...106,319,124
Ensembl chr2B:224,906,271...224,911,506 		JBrowse link
G IL18 interleukin 18 ISO RGD PMID:20644901 RGD:4889158 NCBI chr11:107,024,376...107,045,194
Ensembl chr11:110,867,586...110,888,371 		JBrowse link
G INHBA inhibin subunit beta A ISO RGD PMID:27477354 RGD:151665478 NCBI chr 7:42,538,591...42,556,578
Ensembl chr 7:42,580,730...42,595,097 		JBrowse link
G ITGA2 integrin subunit alpha 2 ISO RGD PMID:10867645 RGD:2307406 NCBI chr 5:60,935,452...61,040,726
Ensembl chr 5:62,555,370...62,659,720 		JBrowse link
G LARP6 La ribonucleoprotein 6, translational regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:49,781,184...49,803,856
Ensembl chr15:68,547,937...68,552,899 		JBrowse link
G LTBP1 latent transforming growth factor beta binding protein 1 ISO RGD PMID:9607192 RGD:10412058 NCBI chr2A:32,956,937...33,409,286
Ensembl chr2A:33,667,191...34,120,602 		JBrowse link
G MKX mohawk homeobox acts_upstream_of_or_within ISO (PMID:20498044) MGI PMID:20498044 NCBI chr10:27,820,454...27,893,373
Ensembl chr10:28,181,483...28,254,311 		JBrowse link
G MRTFA myocardin related transcription factor A ISO RGD PMID:23325387 PMID:31928221 RGD:529195969 RGD:596933101 NCBI chr22:21,314,829...21,536,673
Ensembl chr22:39,413,002...39,467,402 		JBrowse link
G MYB MYB proto-oncogene, transcription factor ISO RGD PMID:15534927 RGD:11532676 NCBI chr 6:132,952,728...132,990,560
Ensembl chr 6:137,048,812...137,086,194 		JBrowse link
G PDGFB platelet derived growth factor subunit B ISO RGD PMID:15358192 RGD:10449487 NCBI chr22:20,127,223...20,148,407
Ensembl chr22:37,944,018...37,964,883 		JBrowse link
G PDGFRB platelet derived growth factor receptor beta ISO RGD PMID:15978205 RGD:2292205 NCBI chr 5:145,538,330...145,580,312
Ensembl chr 5:151,543,891...151,585,530 		JBrowse link
G PRDX5 peroxiredoxin 5 involved_in ISO (PMID:15276323) UniProt PMID:15276323 NCBI chr11:59,675,138...59,678,804
Ensembl chr11:63,020,097...63,023,624 		JBrowse link
G RGCC regulator of cell cycle involved_in
acts_upstream_of 		IEA
ISO 		(PMID:19158077) Ensembl
BHF-UCL		 PMID:19158077 GO_REF:0000107 NCBI chr13:22,639,289...22,652,594
Ensembl chr13:41,228,643...41,241,909 		JBrowse link
G SCX scleraxis bHLH transcription factor involved_in ISO (PMID:18802027)
(PMID:19362560) 		UniProt PMID:18802027 PMID:19362560 NCBI chr 8:141,027,765...141,031,194 JBrowse link
G SERPINB7 serpin family B member 7 ISO RGD PMID:21945418 RGD:7207383 NCBI chr18:57,112,242...57,164,213
Ensembl chr18:60,445,135...60,475,165 		JBrowse link
G SERPINE1 serpin family E member 1 ISO RGD PMID:15828931 RGD:13208547 NCBI chr 7:93,267,517...93,279,728
Ensembl chr 7:106,510,130...106,518,450 		JBrowse link
G SERPINF2 serpin family F member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:1,725,469...1,738,887
Ensembl chr17:1,618,549...1,631,570 		JBrowse link
G SUCO SUN domain containing ossification factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:148,030,922...148,112,755
Ensembl chr 1:151,739,934...151,821,285 		JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in ISO
IEA 		RGD
Ensembl		 PMID:26923362 GO_REF:0000107 RGD:11073665 NCBI chr19:38,324,009...38,347,003
Ensembl chr19:46,831,659...46,852,973 		JBrowse link
G TGFB3 transforming growth factor beta 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:56,516,697...56,542,097
Ensembl chr14:75,359,505...75,382,412 		JBrowse link
G TNFRSF12A TNF receptor superfamily member 12A ISO RGD PMID:23325387 RGD:596933101 NCBI chr16:1,962,179...1,964,223
Ensembl chr16:3,134,577...3,136,581 		JBrowse link
G UCN urocortin ISO RGD PMID:11087261 RGD:1642796 NCBI chr2A:27,309,458...27,311,268
Ensembl chr2A:27,397,295...27,397,669 		JBrowse link
G UTS2 urotensin 2 ISO RGD PMID:17184580 PMID:18475149 RGD:2306811 RGD:2306814 NCBI chr 1:6,609,104...6,616,966
Ensembl chr 1:7,854,687...7,864,688 		JBrowse link
G VIM vimentin involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:17,546,389...17,554,702
Ensembl chr10:17,818,285...17,826,642 		JBrowse link
G WNT4 Wnt family member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:21,310,228...21,335,985
Ensembl chr 1:22,255,056...22,268,801 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19315
    cellular process 18867
      metabolic process 12794
        biosynthetic process 9694
          regulation of biosynthetic process 5368
            regulation of collagen biosynthetic process 59
              negative regulation of collagen biosynthetic process 20
              positive regulation of collagen biosynthetic process 39
Path 2
Term Annotations click to browse term
  biological_process 19315
    biological regulation 11855
      regulation of biological process 11474
        regulation of cellular process 11118
          regulation of metabolic process 6552
            regulation of collagen metabolic process 67
              regulation of collagen biosynthetic process 59
                negative regulation of collagen biosynthetic process 20
                positive regulation of collagen biosynthetic process 39
paths to the root