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ONTOLOGY REPORT - ANNOTATIONS

Term:stereocilium
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Accession:GO:0032420 term browser browse the term
Definition:An actin-based protrusion from the apical surface of auditory and vestibular hair cells and of neuromast cells. These protrusions are supported by a bundle of cross-linked actin filaments (an actin cable), oriented such that the plus (barbed) ends are at the tip of the protrusion, capped by a tip complex which bridges to the plasma. Bundles of stereocilia act as mechanosensory organelles.
Synonyms:never_in_taxon: NCBITaxon:4751 ! Fungi


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stereocilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADGRV1 adhesion G protein-coupled receptor V1 located_in
is_active_in		 ISO
IEA
IBA		 RGD
UniProt
GO_Central		 PMID:16301216 GO_REF:0000033 GO_REF:0000044 RGD:8548636 NCBI chr 2:97,703,648...98,277,847
Ensembl chr 2:97,735,053...98,275,748 		JBrowse link
G ANKRD24 ankyrin repeat domain 24 located_in ISO (PMID:35175278) UniProt PMID:35175278 NCBI chr 2:74,540,868...74,568,402
Ensembl chr 2:74,540,870...74,567,837 		JBrowse link
G ATP8B1 ATPase phospholipid transporting 8B1 located_in ISO (PMID:19478059) UniProt PMID:19478059 NCBI chr 1:162,936,209...163,063,040
Ensembl chr 1:162,936,581...163,061,612 		JBrowse link
G BBS2 Bardet-Biedl syndrome 2 located_in ISO (PMID:25605782) MGI PMID:25605782 NCBI chr 6:18,542,383...18,575,338
Ensembl chr 6:18,542,386...18,575,514 		JBrowse link
G CALB1 calbindin 1 ISO RGD PMID:16120789 RGD:7175527 NCBI chr 4:46,701,276...46,723,548
Ensembl chr 4:46,701,045...46,725,197 		JBrowse link
G CALB2 calbindin 2 ISO RGD PMID:16120789 RGD:7175527 NCBI chr 6:14,392,220...14,420,663
Ensembl chr 6:14,391,857...14,420,663 		JBrowse link
G CDH23 cadherin related 23 located_in ISO (PMID:12485990), (PMID:15882574), (PMID:16481439), (PMID:17050716) HGNC-UCL PMID:12485990 PMID:15882574 PMID:16481439 PMID:17050716 NCBI chr14:74,267,547...74,734,623
Ensembl chr14:74,223,089...74,733,834 		JBrowse link
G CIB2 calcium and integrin binding family member 2 located_in
is_active_in		 IEA
IBA		 Ensembl
UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000044 GO_REF:0000107 NCBI chr 7:47,807,806...47,813,400
Ensembl chr 7:47,788,646...47,813,399 		JBrowse link
G CLIC5 chloride intracellular channel 5 located_in ISO (PMID:17021174) MGI PMID:17021174 NCBI chr 7:40,683,044...40,808,017
Ensembl chr 7:40,682,907...40,863,886 		JBrowse link
G CLRN1 clarin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:91,104,850...91,152,397
Ensembl chr13:91,106,207...91,148,031 		JBrowse link
G DOCK4 dedicator of cytokinesis 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr18:33,423,199...33,879,368
Ensembl chr18:33,423,221...33,879,366 		JBrowse link
G EPS8 EGFR pathway substrate 8, signaling adaptor located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:56,817,445...57,005,117
Ensembl chr 5:56,817,606...57,005,113 		JBrowse link
G ESPN espin located_in IEA UniProt GO_REF:0000044 NCBI chr 6:67,284,106...67,316,577
Ensembl chr 6:67,284,079...67,316,591 		JBrowse link
G ESPNL espin like located_in IEA UniProt GO_REF:0000044 NCBI chr15:137,674,867...137,706,968
Ensembl chr15:137,675,710...137,706,662 		JBrowse link
G F8 coagulation factor VIII located_in IEA UniProt GO_REF:0000044 NCBI chr  X:125,265,330...125,350,853
Ensembl chr  X:125,229,450...125,350,853 		JBrowse link
G FSCN2 fascin actin-bundling protein 2, retinal located_in IEA Ensembl GO_REF:0000107 NCBI chr12:1,300,286...1,311,562
Ensembl chr12:1,300,055...1,309,778 		JBrowse link
G GRXCR1 glutaredoxin and cysteine rich domain containing 1 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 Ensembl chr 8:33,838,400...33,952,661 JBrowse link
G IFT20 intraflagellar transport 20 located_in IEA Ensembl GO_REF:0000107 NCBI chr12:44,609,586...44,616,685
Ensembl chr12:44,609,508...44,616,655 		JBrowse link
G LOXHD1 lipoxygenase homology PLAT domains 1 is_active_in
located_in		 IBA
ISO		 (PMID:19732867) GO_Central
UniProt		 PMID:19732867 GO_REF:0000033 NCBI chr 1:96,080,751...96,287,034
Ensembl chr 1:96,080,824...96,276,992 		JBrowse link
G MINAR2 membrane integral NOTCH2 associated receptor 2 is_active_in
located_in		 ISO
IEA		 (PMID:35727972) MGI
Ensembl		 PMID:35727972 GO_REF:0000107 NCBI chr 2:132,413,265...132,428,786
Ensembl chr 2:132,416,040...132,428,922 		JBrowse link
G MORN4 MORN repeat containing 4 located_in IEA UniProt GO_REF:0000044 NCBI chr14:108,987,739...108,999,610
Ensembl chr14:108,987,752...108,999,598 		JBrowse link
G MPP1 MAGUK p55 scaffold protein 1 located_in IEA UniProt GO_REF:0000044 NCBI chr  X:125,230,412...125,252,384
Ensembl chr  X:125,229,450...125,350,853 		JBrowse link
G MYO15A myosin XVA located_in ISO (PMID:20016102) MGI PMID:20016102 NCBI chr12:60,533,502...60,582,645 JBrowse link
G MYO1C myosin IC located_in IEA Ensembl GO_REF:0000107 NCBI chr12:47,691,252...47,715,670
Ensembl chr12:47,691,256...47,718,337 		JBrowse link
G MYO7A myosin VIIA located_in
is_active_in		 IEA
ISO
ISS		 (PMID:26754646) Ensembl
MGI
UniProt		 PMID:26754646 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:11,251,187...11,337,618
Ensembl chr 9:11,249,075...11,666,296 		JBrowse link
G NHERF1 NHERF family PDZ scaffold protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr12:6,466,138...6,483,539
Ensembl chr12:6,466,121...6,483,548 		JBrowse link
G NHERF2 NHERF family PDZ scaffold protein 2 located_in ISO (PMID:24920589) MGI PMID:24920589 NCBI chr 3:39,942,366...39,952,824
Ensembl chr 3:39,942,367...39,952,825 		JBrowse link
G OCM oncomodulin ISO RGD PMID:16120789 RGD:7175527 NCBI chr 3:5,239,438...5,245,329 JBrowse link
G PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr12:48,567,329...48,735,836
Ensembl chr12:48,628,816...48,735,834 		JBrowse link
G PCDH15 protocadherin related 15 located_in
is_active_in		 IEA
ISO		 (PMID:26754646) InterPro
MGI		 PMID:26754646 GO_REF:0000002 NCBI chr14:95,530,168...96,388,032 JBrowse link
G PDZD7 PDZ domain containing 7 located_in ISO (PMID:27525485), (PMID:31448880) UniProt PMID:27525485 PMID:31448880 NCBI chr14:112,088,332...112,111,348 JBrowse link
G PIEZO1 piezo type mechanosensitive ion channel component 1 located_in ISO (PMID:38228630) UniProt PMID:38228630 NCBI chr 6:914,480...967,113
Ensembl chr 6:914,709...967,111 		JBrowse link
G PIEZO2 piezo type mechanosensitive ion channel component 2 located_in ISO (PMID:38228630) UniProt PMID:38228630 NCBI chr 6:97,644,115...97,945,693
Ensembl chr 6:97,643,978...97,944,456 		JBrowse link
G PLS1 plastin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:83,307,692...83,434,133
Ensembl chr13:83,308,007...83,434,128 		JBrowse link
G PLS3 plastin 3 ISO RGD PMID:12378542 RGD:731234 NCBI chr  X:94,885,098...94,971,664
Ensembl chr  X:94,885,118...94,971,659 		JBrowse link
G PROM1 prominin 1 located_in ISO (PMID:15316084) MGI PMID:15316084 NCBI chr 8:11,215,659...11,331,442
Ensembl chr 8:11,215,663...11,317,312 		JBrowse link
G PVALB parvalbumin ISO RGD PMID:16120789 RGD:7175527 NCBI chr 5:10,953,559...10,973,300
Ensembl chr 5:10,955,491...10,973,289 		JBrowse link
G RDX radixin located_in IEA UniProt GO_REF:0000044 NCBI chr 9:38,243,608...38,299,561
Ensembl chr 9:38,220,447...38,322,097 		JBrowse link
G RHOC ras homolog family member C located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:107,731,713...107,737,705
Ensembl chr 4:107,731,539...107,737,705 		JBrowse link
G RIPOR2 RHO family interacting cell polarization regulator 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:19,609,358...19,842,345
Ensembl chr 7:19,609,358...19,838,093 		JBrowse link
G SLC4A7 solute carrier family 4 member 7 ISO RGD PMID:16301216 RGD:8548636 NCBI chr13:13,933,552...14,043,108
Ensembl chr13:13,933,711...14,043,058 		JBrowse link
G STX4 syntaxin 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:17,422,266...17,431,377
Ensembl chr 3:17,416,842...17,431,053 		JBrowse link
G TMC1 transmembrane channel like 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:225,714,601...226,111,045
Ensembl chr 1:225,929,109...226,109,469 		JBrowse link
G TMC2 transmembrane channel like 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr17:32,977,890...33,047,982
Ensembl chr17:32,977,723...33,048,181 		JBrowse link
G TPRN taperin located_in ISO (PMID:20170899), (PMID:27269051) UniProt PMID:20170899 PMID:27269051
G TSPEAR thrombospondin type laminin G domain and EAR repeats located_in IEA Ensembl
UniProt		 GO_REF:0000044 GO_REF:0000107 NCBI chr13:207,285,878...207,412,523
Ensembl chr13:207,285,886...207,412,511 		JBrowse link
G TWF2 twinfilin actin binding protein 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:34,361,294...34,370,997
Ensembl chr13:34,361,297...34,371,277 		JBrowse link
G USH1C USH1 protein network component harmonin is_active_in
located_in		 ISO (PMID:26754646)
(PMID:12485990), (PMID:20016102)		 RGD
MGI		 PMID:12485990 PMID:16301216 PMID:20016102 PMID:26754646 RGD:8548636 NCBI chr 2:41,593,793...41,646,777
Ensembl chr 2:41,593,802...41,647,247 		JBrowse link
G USH2A usherin ISO hair cell RGD PMID:16301216 RGD:8548636 NCBI chr10:5,825,591...6,662,733 JBrowse link
G WHRN whirlin located_in ISO
IEA		 RGD
Ensembl		 PMID:16434480 GO_REF:0000107 RGD:1600128 NCBI chr 1:255,009,765...255,095,281
Ensembl chr 1:255,009,771...255,095,222 		JBrowse link
G ZSWIM6 zinc finger SWIM-type containing 6 located_in ISO (PMID:25105228) MGI PMID:25105228 NCBI chr16:40,105,499...40,305,379
Ensembl chr16:40,105,227...40,305,197 		JBrowse link
stereocilium base term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLIC5 chloride intracellular channel 5 located_in ISO PMID:24285636
(PMID:37952086)		 UniProt PMID:24285636 PMID:37952086 RGD:401966878 NCBI chr 7:40,683,044...40,808,017
Ensembl chr 7:40,682,907...40,863,886 		JBrowse link
G GRXCR2 glutaredoxin and cysteine rich domain containing 2 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:147,215,061...147,231,792
Ensembl chr 2:147,216,279...147,232,478 		JBrowse link
G MYO7A myosin VIIA located_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:11,251,187...11,337,618
Ensembl chr 9:11,249,075...11,666,296 		JBrowse link
G PJVK pejvakin located_in IEA Ensembl GO_REF:0000107 NCBI chr15:84,157,864...84,165,763
Ensembl chr15:84,158,639...84,165,906 		JBrowse link
G PTPRQ protein tyrosine phosphatase receptor type Q located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:100,787,025...101,081,145
Ensembl chr 5:100,787,027...101,033,334 		JBrowse link
G RDX radixin located_in ISS UniProt GO_REF:0000024 NCBI chr 9:38,243,608...38,299,561
Ensembl chr 9:38,220,447...38,322,097 		JBrowse link
G TPRN taperin located_in ISO (PMID:24285636), (PMID:28209736), (PMID:30159668), (PMID:30380417), (PMID:37952086) UniProt PMID:24285636 PMID:28209736 PMID:30159668 PMID:30380417 PMID:37952086
G TRIOBP TRIO and F-actin binding protein located_in ISO (PMID:28209736) MGI PMID:28209736 NCBI chr 5:10,066,080...10,132,668
Ensembl chr 5:10,066,086...10,126,491 		JBrowse link
stereocilium coat term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PKHD1L1 PKHD1 like 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:28,023,448...28,176,331
Ensembl chr 4:28,025,587...28,176,361 		JBrowse link
stereocilium membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CACNA1B calcium voltage-gated channel subunit alpha1 B ISO RGD PMID:10408625 RGD:11556226 (All species) (All species)
G MYO1C myosin IC located_in IEA UniProt GO_REF:0000044 NCBI chr12:47,691,252...47,715,670
Ensembl chr12:47,691,256...47,718,337 		JBrowse link
G RIPOR2 RHO family interacting cell polarization regulator 2 located_in IEA UniProt GO_REF:0000044 NCBI chr 7:19,609,358...19,842,345
Ensembl chr 7:19,609,358...19,838,093 		JBrowse link
G USH2A usherin located_in ISO (PMID:16301217) BHF-UCL PMID:16301217 NCBI chr10:5,825,591...6,662,733 JBrowse link
stereocilium shaft term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FCHSD2 FCH and double SH3 domains 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:7,366,516...7,619,960
Ensembl chr 9:7,366,523...7,608,469 		JBrowse link
G GRXCR2 glutaredoxin and cysteine rich domain containing 2 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:147,215,061...147,231,792
Ensembl chr 2:147,216,279...147,232,478 		JBrowse link
stereocilium tip term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDC14A cell division cycle 14A located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:117,635,849...117,804,568
Ensembl chr 4:117,635,861...117,805,254 		JBrowse link
G CDH23 cadherin related 23 located_in ISO (PMID:12485990), (PMID:17050716), (PMID:24920589) MGI PMID:12485990 PMID:17050716 PMID:24920589 NCBI chr14:74,267,547...74,734,623
Ensembl chr14:74,223,089...74,733,834 		JBrowse link
G CEACAM16 CEA cell adhesion molecule 16, tectorial membrane component located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:51,217,085...51,228,458
Ensembl chr 6:51,220,812...51,231,761 		JBrowse link
G CORO1A coronin 1A is_active_in ISO (PMID:26754646) MGI PMID:26754646 NCBI chr 3:18,336,813...18,342,381
Ensembl chr 3:18,336,898...18,342,396 		JBrowse link
G EPS8 EGFR pathway substrate 8, signaling adaptor located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:56,817,445...57,005,117
Ensembl chr 5:56,817,606...57,005,113 		JBrowse link
G EPS8L2 EPS8 signaling adaptor L2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:435,257...452,630
Ensembl chr 2:433,649...452,630 		JBrowse link
G ESPN espin is_active_in
located_in		 ISO (PMID:26754646)
(PMID:22264607), (PMID:26754646)		 MGI PMID:22264607 PMID:26754646 NCBI chr 6:67,284,106...67,316,577
Ensembl chr 6:67,284,079...67,316,591 		JBrowse link
G ESPNL espin like located_in
is_active_in		 IEA
ISO		 (PMID:26754646) Ensembl
MGI		 PMID:26754646 GO_REF:0000107 NCBI chr15:137,674,867...137,706,968
Ensembl chr15:137,675,710...137,706,662 		JBrowse link
G HOMER2 homer scaffold protein 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:52,001,253...52,104,426
Ensembl chr 7:52,001,579...52,096,828 		JBrowse link
G LHFPL5 LHFPL tetraspan subfamily member 5 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:31,624,050...31,642,269
Ensembl chr 7:31,624,450...31,642,268 		JBrowse link
G MORN4 MORN repeat containing 4 located_in
is_active_in		 IEA
ISO		 (PMID:26754646) Ensembl
MGI		 PMID:26754646 GO_REF:0000107 NCBI chr14:108,987,739...108,999,610
Ensembl chr14:108,987,752...108,999,598 		JBrowse link
G MYO3A myosin IIIA is_active_in
located_in		 ISO (PMID:26754646)
(PMID:21165622), (PMID:22264607), (PMID:26754646)		 MGI
UniProt		 PMID:21165622 PMID:22264607 PMID:26754646 NCBI chr10:49,392,119...49,623,575 JBrowse link
G MYO3B myosin IIIB is_active_in
located_in		 ISO (PMID:26754646)
(PMID:22264607), (PMID:26754646)		 MGI
UniProt		 PMID:22264607 PMID:26754646 NCBI chr15:76,432,429...76,855,443
Ensembl chr15:76,401,963...76,855,429 		JBrowse link
G NHERF1 NHERF family PDZ scaffold protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr12:6,466,138...6,483,539
Ensembl chr12:6,466,121...6,483,548 		JBrowse link
G PDZD7 PDZ domain containing 7 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr14:112,088,332...112,111,348 JBrowse link
G PKHD1L1 PKHD1 like 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:28,023,448...28,176,331
Ensembl chr 4:28,025,587...28,176,361 		JBrowse link
G STRC stereocilin located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:127,830,759...127,852,392
Ensembl chr 1:127,835,622...127,852,339 		JBrowse link
G TMC1 transmembrane channel like 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:225,714,601...226,111,045
Ensembl chr 1:225,929,109...226,109,469 		JBrowse link
G TMC2 transmembrane channel like 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr17:32,977,890...33,047,982
Ensembl chr17:32,977,723...33,048,181 		JBrowse link
G USH1C USH1 protein network component harmonin is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 2:41,593,793...41,646,777
Ensembl chr 2:41,593,802...41,647,247 		JBrowse link
G WHRN whirlin located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:255,009,765...255,095,281
Ensembl chr 1:255,009,771...255,095,222 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18482
    cellular anatomical structure 18259
      organelle 12286
        stereocilium 67
          actin filament bundle of stereocilium 0
          stereocilium base 8
          stereocilium coat 1
          stereocilium membrane 4
          stereocilium shaft 2
          stereocilium tip 21
Path 2
Term Annotations click to browse term
  cellular_component 18482
    cellular anatomical structure 18259
      cell projection 2470
        plasma membrane bounded cell projection 2403
          neuron projection 1508
            stereocilium 67
              actin filament bundle of stereocilium 0
              stereocilium base 8
              stereocilium coat 1
              stereocilium membrane 4
              stereocilium shaft 2
              stereocilium tip 21
paths to the root