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ONTOLOGY REPORT - ANNOTATIONS

Term:stereocilium
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Accession:GO:0032420 term browser browse the term
Definition:An actin-based protrusion from the apical surface of auditory and vestibular hair cells and of neuromast cells. These protrusions are supported by a bundle of cross-linked actin filaments (an actin cable), oriented such that the plus (barbed) ends are at the tip of the protrusion, capped by a tip complex which bridges to the plasma. Bundles of stereocilia act as mechanosensory organelles.
Synonyms:never_in_taxon: NCBITaxon:4751 ! Fungi


show annotations for term's descendants           Sort by:
stereocilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADCY6 adenylate cyclase 6 located_in IEA UniProt GO_REF:0000044 NCBI chr27:5,739,514...5,752,888
Ensembl chr27:5,733,586...5,752,888 		JBrowse link
G ADGRV1 adhesion G protein-coupled receptor V1 located_in
is_active_in		 ISO
IEA		 (PMID:26754646) RGD
UniProt
MGI		 PMID:16301216 PMID:26754646 GO_REF:0000044 RGD:8548636 NCBI chr 3:17,866,459...18,351,532
Ensembl chr 3:17,866,808...18,351,532 		JBrowse link
G ANKRD24 ankyrin repeat domain 24 located_in ISO (PMID:35175278) UniProt PMID:35175278 NCBI chr20:55,391,381...55,404,538
Ensembl chr20:55,391,652...55,404,544 		JBrowse link
G ATP8B1 ATPase phospholipid transporting 8B1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:18,156,664...18,279,131
Ensembl chr 1:18,156,410...18,277,904 		JBrowse link
G BBS2 Bardet-Biedl syndrome 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:59,650,439...59,705,728
Ensembl chr 2:59,677,216...59,705,730 		JBrowse link
G CALB1 calbindin 1 ISO RGD PMID:16120789 RGD:7175527 NCBI chr29:35,551,836...35,572,985
Ensembl chr29:35,552,436...35,572,925 		JBrowse link
G CALB2 calbindin 2 ISO RGD PMID:16120789 RGD:7175527 NCBI chr 5:77,178,158...77,205,663
Ensembl chr 5:77,177,951...77,205,671 		JBrowse link
G CDH23 cadherin related 23 located_in ISO (PMID:12485990), (PMID:15882574), (PMID:16481439), (PMID:17050716) HGNC-UCL PMID:12485990 PMID:15882574 PMID:16481439 PMID:17050716 NCBI chr 4:22,206,972...22,570,875
Ensembl chr 4:22,207,001...22,571,131 		JBrowse link
G CIB2 calcium and integrin binding family member 2 located_in IEA UniProt GO_REF:0000044
G CLIC5 chloride intracellular channel 5 located_in ISO (PMID:17021174) MGI PMID:17021174 NCBI chr12:14,160,524...14,318,174
Ensembl chr12:14,144,390...14,318,582 		JBrowse link
G CLRN1 clarin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr23:45,512,639...45,551,010
Ensembl chr23:45,513,416...45,551,178 		JBrowse link
G DOCK4 dedicator of cytokinesis 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr14:51,448,910...51,859,366
Ensembl chr14:51,451,059...51,859,040 		JBrowse link
G EPS8 EGFR pathway substrate 8, signaling adaptor located_in IEA Ensembl GO_REF:0000107 NCBI chr27:30,893,884...31,070,401
Ensembl chr27:30,893,713...31,069,770 		JBrowse link
G ESPN espin located_in IEA UniProt GO_REF:0000044 NCBI chr 5:60,285,185...60,316,261
Ensembl chr 5:60,285,312...60,315,676 		JBrowse link
G ESPNL espin like located_in IEA UniProt GO_REF:0000044 NCBI chr25:48,609,340...48,634,397 JBrowse link
G FSCN2 fascin actin-bundling protein 2, retinal located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:616,088...622,152
Ensembl chr 9:617,609...621,882 		JBrowse link
G GRXCR1 glutaredoxin and cysteine rich domain containing 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:39,766,910...39,882,076
Ensembl chr13:39,766,919...39,882,086 		JBrowse link
G IFT20 intraflagellar transport 20 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:42,581,117...42,587,830
Ensembl chr 9:42,581,433...42,587,804 		JBrowse link
G LOXHD1 lipoxygenase homology PLAT domains 1 located_in ISO (PMID:19732867) UniProt PMID:19732867 NCBI chr 7:44,662,800...44,828,405
Ensembl chr 7:44,663,182...44,826,858 		JBrowse link
G MINAR2 membrane integral NOTCH2 associated receptor 2 is_active_in
located_in		 ISO
IEA		 (PMID:35727972) MGI
Ensembl		 PMID:35727972 GO_REF:0000107 NCBI chr11:18,506,042...18,531,187
Ensembl chr11:18,507,059...18,524,589 		JBrowse link
G MORN4 MORN repeat containing 4 located_in IEA UniProt GO_REF:0000044 NCBI chr28:10,873,435...10,885,350
Ensembl chr28:10,874,318...10,884,047 		JBrowse link
G MPP1 MAGUK p55 scaffold protein 1 located_in IEA UniProt GO_REF:0000044 NCBI chr  X:122,851,667...122,878,865
Ensembl chr  X:122,851,667...122,879,394 		JBrowse link
G MYO15A myosin XVA located_in ISO (PMID:20016102) MGI PMID:20016102 NCBI chr 5:41,369,484...41,421,303
Ensembl chr 5:41,370,509...41,392,881 		JBrowse link
G MYO1C myosin IC located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:45,635,295...45,658,226
Ensembl chr 9:45,636,208...45,658,035 		JBrowse link
G MYO7A myosin VIIA located_in
is_active_in		 IEA
ISO		 (PMID:26754646) Ensembl
MGI		 PMID:26754646 GO_REF:0000107 NCBI chr21:21,539,735...21,624,063
Ensembl chr21:21,539,785...21,624,279 		JBrowse link
G NHERF1 NHERF family PDZ scaffold protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:5,661,792...5,679,783
Ensembl chr 9:5,662,464...5,679,570 		JBrowse link
G NHERF2 NHERF family PDZ scaffold protein 2 located_in ISO (PMID:24920589) MGI PMID:24920589 NCBI chr 6:38,905,070...38,915,028
Ensembl chr 6:38,905,635...38,942,774 		JBrowse link
G PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:46,648,057...46,731,259
Ensembl chr 9:46,648,052...46,771,400 		JBrowse link
G PCDH15 protocadherin related 15 located_in
is_active_in		 IEA
ISO		 (PMID:26754646) InterPro
MGI		 PMID:26754646 GO_REF:0000002 NCBI chr26:33,426,728...34,589,208
Ensembl chr26:33,719,839...34,588,017 		JBrowse link
G PDZD7 PDZ domain containing 7 located_in IEA Ensembl GO_REF:0000107 NCBI chr28:13,693,032...13,711,654
Ensembl chr28:13,693,023...13,711,784 		JBrowse link
G PIEZO1 piezo type mechanosensitive ion channel component 1 located_in ISO (PMID:38228630) UniProt PMID:38228630 NCBI chr 5:64,584,153...64,640,423
Ensembl chr 5:64,570,035...64,640,375 		JBrowse link
G PIEZO2 piezo type mechanosensitive ion channel component 2 located_in ISO (PMID:38228630) UniProt PMID:38228630 NCBI chr 7:76,477,628...76,918,660
Ensembl chr 7:76,478,928...76,919,723 		JBrowse link
G PLS1 plastin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr23:38,243,631...38,347,195
Ensembl chr23:38,243,024...38,347,202 		JBrowse link
G PLS3 plastin 3 ISO RGD PMID:12378542 RGD:731234 NCBI chr  X:88,308,817...88,399,682
Ensembl chr  X:88,308,888...88,398,810 		JBrowse link
G PROM1 prominin 1 located_in ISO (PMID:15316084) MGI PMID:15316084 NCBI chr 3:64,229,487...64,362,346
Ensembl chr 3:64,260,685...64,382,009 		JBrowse link
G PVALB parvalbumin ISO RGD PMID:16120789 RGD:7175527 NCBI chr10:27,655,896...27,674,309
Ensembl chr10:27,655,905...27,707,332 		JBrowse link
G RDX radixin located_in ISO (PMID:17021174) MGI PMID:17021174 NCBI chr 5:22,555,913...22,642,822
Ensembl chr 5:22,571,286...22,642,811 		JBrowse link
G RHOC ras homolog family member C located_in IEA Ensembl GO_REF:0000107 NCBI chr17:62,868,373...62,872,322 JBrowse link
G RIPOR2 RHO family interacting cell polarization regulator 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr35:22,823,053...23,041,765
Ensembl chr35:22,824,106...23,041,743 		JBrowse link
G SLC4A7 solute carrier family 4 member 7 ISO RGD PMID:16301216 RGD:8548636 NCBI chr23:16,710,649...16,788,277
Ensembl chr23:16,710,701...16,785,541 		JBrowse link
G STX4 syntaxin 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:17,184,044...17,189,481
Ensembl chr 6:17,184,399...17,189,370 		JBrowse link
G TLR9 toll like receptor 9 located_in IEA Ensembl GO_REF:0000107 NCBI chr20:37,529,322...37,547,117
Ensembl chr20:37,542,340...37,547,114
Ensembl chr20:37,542,340...37,547,114 		JBrowse link
G TMC1 transmembrane channel like 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:85,041,039...85,159,607
Ensembl chr 1:85,041,574...85,187,369 		JBrowse link
G TMC2 transmembrane channel like 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr24:18,576,966...18,642,204
Ensembl chr24:18,578,138...18,642,198 		JBrowse link
G TPRN taperin located_in IEA Ensembl GO_REF:0000107
G TSPEAR thrombospondin type laminin G domain and EAR repeats located_in IEA UniProt GO_REF:0000044 NCBI chr31:38,273,306...38,340,525
Ensembl chr31:38,272,592...38,337,373 		JBrowse link
G TWF2 twinfilin actin binding protein 2 located_in ISO (PMID:19955359) BHF-UCL PMID:19955359 NCBI chr20:37,529,322...37,539,955
Ensembl chr20:37,529,401...37,539,957 		JBrowse link
G USH1C USH1 protein network component harmonin is_active_in
located_in		 ISO (PMID:26754646)
(PMID:12485990), (PMID:20016102)		 RGD
MGI		 PMID:12485990 PMID:16301216 PMID:20016102 PMID:26754646 RGD:8548636 NCBI chr21:40,055,786...40,100,685
Ensembl chr21:40,055,730...40,101,430 		JBrowse link
G USH2A usherin ISO hair cell RGD PMID:16301216 RGD:8548636 NCBI chr38:11,063,221...11,750,444
Ensembl chr38:11,063,817...11,750,444 		JBrowse link
G WHRN whirlin located_in ISO
IEA		 RGD
Ensembl		 PMID:16434480 GO_REF:0000107 RGD:1600128 NCBI chr11:68,617,383...68,699,824
Ensembl chr11:68,617,377...68,699,977 		JBrowse link
G ZSWIM6 zinc finger SWIM-type containing 6 located_in ISO (PMID:25105228) MGI PMID:25105228 NCBI chr 2:47,954,786...48,064,489
Ensembl chr 2:47,991,716...48,063,680 		JBrowse link
stereocilium base term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLIC5 chloride intracellular channel 5 located_in ISO PMID:24285636
(PMID:37952086)		 UniProt PMID:24285636 PMID:37952086 RGD:401966878 NCBI chr12:14,160,524...14,318,174
Ensembl chr12:14,144,390...14,318,582 		JBrowse link
G GRXCR2 glutaredoxin and cysteine rich domain containing 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:40,310,285...40,330,200
Ensembl chr 2:40,315,807...40,328,240 		JBrowse link
G MYO7A myosin VIIA located_in IEA Ensembl GO_REF:0000107 NCBI chr21:21,539,735...21,624,063
Ensembl chr21:21,539,785...21,624,279 		JBrowse link
G PJVK pejvakin located_in IEA Ensembl GO_REF:0000107 NCBI chr36:22,080,574...22,087,537
Ensembl chr36:22,040,303...22,092,249 		JBrowse link
G PTPRQ protein tyrosine phosphatase receptor type Q located_in IEA Ensembl GO_REF:0000107 NCBI chr15:22,771,653...23,017,694
Ensembl chr15:22,825,348...23,013,762 		JBrowse link
G RDX radixin located_in ISO (PMID:24285636), (PMID:30159668) UniProt PMID:24285636 PMID:30159668 NCBI chr 5:22,555,913...22,642,822
Ensembl chr 5:22,571,286...22,642,811 		JBrowse link
G TPRN taperin located_in IEA Ensembl GO_REF:0000107
G TRIOBP TRIO and F-actin binding protein located_in ISO (PMID:28209736) MGI PMID:28209736 NCBI chr10:26,856,981...26,913,330
Ensembl chr10:26,857,678...26,911,083 		JBrowse link
stereocilium coat term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PKHD1L1 PKHD1 like 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:9,925,047...10,073,054
Ensembl chr13:9,926,156...10,070,253 		JBrowse link
stereocilium membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CACNA1B calcium voltage-gated channel subunit alpha1 B ISO RGD PMID:10408625 RGD:11556226 (All species) (All species) NCBI chr 9:47,813,625...48,009,532
Ensembl chr 9:47,816,393...48,009,406 		JBrowse link
G MYO1C myosin IC located_in IEA UniProt GO_REF:0000044 NCBI chr 9:45,635,295...45,658,226
Ensembl chr 9:45,636,208...45,658,035 		JBrowse link
G RIPOR2 RHO family interacting cell polarization regulator 2 located_in IEA UniProt GO_REF:0000044 NCBI chr35:22,823,053...23,041,765
Ensembl chr35:22,824,106...23,041,743 		JBrowse link
G USH2A usherin located_in IEA Ensembl GO_REF:0000107 NCBI chr38:11,063,221...11,750,444
Ensembl chr38:11,063,817...11,750,444 		JBrowse link
stereocilium shaft term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FCHSD2 FCH and double SH3 domains 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr21:25,082,864...25,399,754
Ensembl chr21:25,072,161...25,397,717 		JBrowse link
G GRXCR2 glutaredoxin and cysteine rich domain containing 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:40,310,285...40,330,200
Ensembl chr 2:40,315,807...40,328,240 		JBrowse link
stereocilium tip term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C3H15orf40 chromosome 3 C15orf40 homolog located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:54,788,092...54,793,197
Ensembl chr 3:54,657,075...54,794,206 		JBrowse link
G CDC14A cell division cycle 14A located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:49,429,675...49,678,376
Ensembl chr 6:49,497,939...49,693,665 		JBrowse link
G CDH23 cadherin related 23 located_in ISO (PMID:12485990), (PMID:17050716), (PMID:24920589) MGI PMID:12485990 PMID:17050716 PMID:24920589 NCBI chr 4:22,206,972...22,570,875
Ensembl chr 4:22,207,001...22,571,131 		JBrowse link
G CEACAM16 CEA cell adhesion molecule 16, tectorial membrane component located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:110,652,362...110,661,173
Ensembl chr 1:110,652,584...110,660,334 		JBrowse link
G CORO1A coronin 1A is_active_in ISO (PMID:26754646) MGI PMID:26754646 NCBI chr 6:18,161,850...18,167,915
Ensembl chr 6:18,160,601...18,167,818 		JBrowse link
G EPS8 EGFR pathway substrate 8, signaling adaptor located_in IEA Ensembl GO_REF:0000107 NCBI chr27:30,893,884...31,070,401
Ensembl chr27:30,893,713...31,069,770 		JBrowse link
G EPS8L2 EPS8 signaling adaptor L2 located_in IEA Ensembl GO_REF:0000107 NCBI chr18:25,741,166...25,755,310
Ensembl chr18:25,733,090...25,755,658 		JBrowse link
G ESPN espin is_active_in
located_in		 ISO (PMID:26754646)
(PMID:22264607), (PMID:26754646)		 MGI PMID:22264607 PMID:26754646 NCBI chr 5:60,285,185...60,316,261
Ensembl chr 5:60,285,312...60,315,676 		JBrowse link
G ESPNL espin like located_in
is_active_in		 IEA
ISO		 (PMID:26754646) Ensembl
MGI		 PMID:26754646 GO_REF:0000107 NCBI chr25:48,609,340...48,634,397 JBrowse link
G HOMER2 homer scaffold protein 2 located_in IEA Ensembl GO_REF:0000107
G LHFPL5 LHFPL tetraspan subfamily member 5 located_in IEA Ensembl GO_REF:0000107 NCBI chr12:4,919,732...4,936,823
Ensembl chr12:4,902,832...4,936,413 		JBrowse link
G MORN4 MORN repeat containing 4 located_in
is_active_in		 IEA
ISO		 (PMID:26754646) Ensembl
MGI		 PMID:26754646 GO_REF:0000107 NCBI chr28:10,873,435...10,885,350
Ensembl chr28:10,874,318...10,884,047 		JBrowse link
G MYO3A myosin IIIA is_active_in
located_in		 ISO (PMID:26754646)
(PMID:21165622), (PMID:22264607), (PMID:26754646)		 MGI
UniProt		 PMID:21165622 PMID:22264607 PMID:26754646 NCBI chr 2:7,455,125...7,695,483
Ensembl chr 2:7,455,625...7,696,043 		JBrowse link
G MYO3B myosin IIIB is_active_in
located_in		 ISO (PMID:26754646)
(PMID:22264607), (PMID:26754646)		 MGI
UniProt		 PMID:22264607 PMID:26754646 NCBI chr36:14,804,662...15,229,597
Ensembl chr36:14,803,514...15,209,820 		JBrowse link
G NHERF1 NHERF family PDZ scaffold protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:5,661,792...5,679,783
Ensembl chr 9:5,662,464...5,679,570 		JBrowse link
G PKHD1L1 PKHD1 like 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:9,925,047...10,073,054
Ensembl chr13:9,926,156...10,070,253 		JBrowse link
G STRC stereocilin located_in IEA Ensembl GO_REF:0000107 NCBI chr30:10,444,726...10,459,058
Ensembl chr30:10,444,793...10,460,785 		JBrowse link
G TMC1 transmembrane channel like 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:85,041,039...85,159,607
Ensembl chr 1:85,041,574...85,187,369 		JBrowse link
G TMC2 transmembrane channel like 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr24:18,576,966...18,642,204
Ensembl chr24:18,578,138...18,642,198 		JBrowse link
G WHRN whirlin located_in IEA Ensembl GO_REF:0000107 NCBI chr11:68,617,383...68,699,824
Ensembl chr11:68,617,377...68,699,977 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18217
    cellular anatomical structure 17949
      organelle 12614
        stereocilium 68
          actin filament bundle of stereocilium 0
          stereocilium base 8
          stereocilium coat 1
          stereocilium membrane 4
          stereocilium shaft 2
          stereocilium tip 20
Path 2
Term Annotations click to browse term
  cellular_component 18217
    cellular anatomical structure 17949
      cell projection 2394
        plasma membrane bounded cell projection 2321
          neuron projection 1431
            stereocilium 68
              actin filament bundle of stereocilium 0
              stereocilium base 8
              stereocilium coat 1
              stereocilium membrane 4
              stereocilium shaft 2
              stereocilium tip 20
paths to the root