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ONTOLOGY REPORT - ANNOTATIONS

Term:photoreceptor connecting cilium
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Accession:GO:0032391 term browser browse the term
Definition:The portion of the photoreceptor cell cilium linking the photoreceptor inner and outer segments. It's considered to be equivalent to the ciliary transition zone.
Synonyms:related_synonym: photoreceptor cilium


show annotations for term's descendants           Sort by:
photoreceptor connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC131360.2 located_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr18:29,185,443...29,187,845 JBrowse link
G Adgrv1 adhesion G protein-coupled receptor V1 located_in ISO (PMID:17906286) RGD PMID:17906286 NCBI chr 2:11,331,434...11,911,713
Ensembl chr 2:11,331,442...11,911,688 		JBrowse link
G Alpk1 alpha-kinase 1 located_in ISO (PMID:30967659) RGD PMID:30967659 NCBI chr 2:216,126,939...216,247,180
Ensembl chr 2:216,128,825...216,247,157 		JBrowse link
G Arl3 ARF like GTPase 3 located_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:12417528)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:12417528 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:245,400,659...245,446,673
Ensembl chr 1:245,400,550...245,446,820 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 located_in ISO (PMID:23943788) RGD PMID:23943788 NCBI chr 8:59,731,912...59,765,408
Ensembl chr 8:59,731,912...59,765,607 		JBrowse link
G Cep290 centrosomal protein 290 located_in ISO (PMID:16632484), (PMID:16682973), (PMID:23943788) RGD PMID:16632484 PMID:16682973 PMID:23943788 NCBI chr 7:35,310,071...35,399,388
Ensembl chr 7:35,310,199...35,399,392 		JBrowse link
G Cetn1 centrin 1 located_in ISO (PMID:15347651), (PMID:30120214) RGD PMID:15347651 PMID:30120214 NCBI chr18:651,591...652,293
Ensembl chr18:651,591...652,293 		JBrowse link
G Cetn2 centrin 2 located_in ISO (PMID:15347651) RGD PMID:15347651 NCBI chr  X:150,769,944...150,774,833
Ensembl chr  X:150,769,953...150,774,919 		JBrowse link
G Cetn3 centrin 3 located_in ISO (PMID:15347651), (PMID:22031837), (PMID:24833722) RGD PMID:15347651 PMID:22031837 PMID:24833722 NCBI chr 2:12,089,025...12,101,828
Ensembl chr 2:12,089,226...12,101,828 		JBrowse link
G Cfap410 cilia and flagella associated protein 410 located_in ISO (PMID:26974433) RGD PMID:26974433 NCBI chr20:10,687,863...10,694,736
Ensembl chr20:10,687,863...10,694,737 		JBrowse link
G Fam161a FAM161 centrosomal protein A located_in
is_active_in		 IDA
ISO
IBA
IEA		 PMID:22940612
(PMID:22791751), (PMID:22940612), (PMID:24833722)
GO_REF:0000033
GO_REF:0000107
(PMID:22940612)		 RGD
GO_Central
Ensembl		 PMID:22791751 PMID:22940612 PMID:24833722 PMID:22940612 GO_REF:0000033 GO_REF:0000107, RGD:8553427 NCBI chr14:97,009,449...97,027,865
Ensembl chr14:97,009,491...97,028,588 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 located_in ISO (PMID:17881533) RGD PMID:17881533 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Ift122 intraflagellar transport 122 located_in ISO (PMID:19208653) RGD PMID:19208653 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Ift140 intraflagellar transport 140 located_in ISO (PMID:20368623), (PMID:24619649) RGD PMID:20368623 PMID:24619649 NCBI chr10:14,032,665...14,121,682
Ensembl chr10:14,032,648...14,120,433 		JBrowse link
G Ift20 intraflagellar transport 20 located_in ISO (PMID:31637240)
(PMID:21307337)		 RGD PMID:21307337 PMID:31637240 NCBI chr10:63,432,597...63,438,125
Ensembl chr10:63,432,633...63,438,124 		JBrowse link
G Ift52 intraflagellar transport 52 located_in ISO (PMID:31637240)
(PMID:20368623)		 RGD PMID:20368623 PMID:31637240 NCBI chr 3:151,672,505...151,696,975
Ensembl chr 3:151,672,493...151,696,980 		JBrowse link
G Ift57 intraflagellar transport 57 located_in ISO (PMID:31637240)
(PMID:20368623)		 RGD PMID:20368623 PMID:31637240 NCBI chr11:51,051,520...51,124,909
Ensembl chr11:51,059,611...51,124,812 		JBrowse link
G Ift88 intraflagellar transport 88 located_in ISO (PMID:19208653), (PMID:20368623) RGD PMID:19208653 PMID:20368623 NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147 		JBrowse link
G Iqcb1 IQ motif containing B1 located_in ISO (PMID:15723066) RGD PMID:15723066 NCBI chr11:63,905,595...63,960,141
Ensembl chr11:63,905,590...63,960,093 		JBrowse link
G Kiaa1549 KIAA1549 homolog located_in ISO (PMID:30120214) RGD PMID:30120214 NCBI chr 4:66,840,674...66,968,407
Ensembl chr 4:66,760,162...66,968,436 		JBrowse link
G Kif17 kinesin family member 17 located_in ISO (PMID:19384852) RGD PMID:19384852 NCBI chr 5:150,482,288...150,521,471
Ensembl chr 5:150,481,578...150,519,638 		JBrowse link
G Kif3a kinesin family member 3a located_in ISO (PMID:19208653) RGD PMID:19208653 NCBI chr10:37,725,930...37,761,183
Ensembl chr10:37,725,970...37,759,191 		JBrowse link
G Kifap3 kinesin-associated protein 3 located_in ISO (PMID:19384852) RGD PMID:19384852 NCBI chr13:76,127,702...76,264,654
Ensembl chr13:76,127,696...76,264,650 		JBrowse link
G Lca5 lebercilin LCA5 located_in ISO
IDA		 (PMID:21606596)
PMID:17546029		 RGD PMID:21606596 PMID:17546029 RGD:14397561 NCBI chr 8:84,307,696...84,375,025
Ensembl chr 8:84,317,659...84,374,956 		JBrowse link
G Mak male germ cell-associated kinase located_in IEA
ISO		 GO_REF:0000107
(PMID:21148103)		 Ensembl
RGD		 PMID:21148103 GO_REF:0000107 NCBI chr17:23,683,753...23,731,125
Ensembl chr17:23,693,878...23,730,001 		JBrowse link
G Myo7a myosin VIIA located_in ISO (PMID:10414956) RGD PMID:10414956 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157 		JBrowse link
G Nphp1 nephrocystin 1 located_in ISO (PMID:16885411) RGD PMID:16885411 NCBI chr 3:114,960,650...115,016,234
Ensembl chr 3:114,960,650...115,016,234 		JBrowse link
G Nphp4 nephrocystin 4 located_in ISO (PMID:21078623) RGD PMID:21078623 NCBI chr 5:162,986,157...163,073,708
Ensembl chr 5:162,988,370...163,073,706 		JBrowse link
G Pcdhb22 protocadherin beta 22 located_in ISO (PMID:18279309) RGD PMID:18279309 NCBI chr18:29,223,028...29,229,132
Ensembl chr18:29,223,149...29,225,536 		JBrowse link
G Poc5 POC5 centriolar protein is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:27,719,745...27,748,805
Ensembl chr 2:27,719,762...27,748,805 		JBrowse link
G Rp1 RP1, axonemal microtubule associated located_in ISO (PMID:11767049)
(PMID:11773008), (PMID:14507858)		 RGD PMID:11767049 PMID:11773008 PMID:14507858 NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363 		JBrowse link
G Rp1l1 RP1 like 1 located_in ISO (PMID:19657028) RGD PMID:19657028 NCBI chr15:38,259,907...38,271,269
Ensembl chr15:38,259,928...38,270,316 		JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator located_in ISO (PMID:10725384) RGD PMID:10725384 NCBI chr  X:12,566,447...12,628,171
Ensembl chr  X:12,566,645...12,747,882 		JBrowse link
G Rpgrip1 RPGR interacting protein 1 located_in ISO (PMID:25398945) RGD PMID:25398945 NCBI chr15:24,814,576...24,867,522
Ensembl chr15:24,814,614...24,868,605 		JBrowse link
G Rpgrip1l Rpgrip1-like is_active_in IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:17558407 GO_REF:0000033, RGD:11537356 NCBI chr19:15,692,189...15,785,083
Ensembl chr19:15,692,150...15,785,083 		JBrowse link
G Septin2 septin 2 located_in ISO
IEA		 (PMID:23572511)
GO_REF:0000107		 RGD
Ensembl		 PMID:23572511 GO_REF:0000107 NCBI chr 9:94,018,141...94,051,386
Ensembl chr 9:94,018,208...94,051,386 		JBrowse link
G Spata7 spermatogenesis associated 7 located_in ISS
ISO		 GO_REF:0000024
(PMID:25398945)		 UniProt
RGD		 PMID:25398945 GO_REF:0000024 NCBI chr 6:117,879,828...117,925,284
Ensembl chr 6:117,879,823...117,925,284 		JBrowse link
G Sptbn5 spectrin, beta, non-erythrocytic 5 located_in ISO (PMID:23704327) RGD PMID:23704327 NCBI chr 3:107,013,783...107,054,878
Ensembl chr 3:107,013,265...107,054,324 		JBrowse link
G Tbcc tubulin folding cofactor C located_in ISO (PMID:12417528) RGD PMID:12417528 NCBI chr 9:14,098,855...14,100,043
Ensembl chr 9:14,098,868...14,100,042 		JBrowse link
G Tmem237 transmembrane protein 237 located_in ISO (PMID:20375344) RGD PMID:20375344 NCBI chr 9:60,533,348...60,569,253
Ensembl chr 9:60,535,233...60,572,567 		JBrowse link
G Topors TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase located_in
is_active_in		 ISO
IBA		 (PMID:21159800)
GO_REF:0000033		 RGD
GO_Central		 PMID:21159800 GO_REF:0000033 NCBI chr 5:55,388,033...55,399,937
Ensembl chr 5:55,387,632...55,399,937 		JBrowse link
G Tsga10ip testis specific 10 interacting protein is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:202,700,576...202,714,668
Ensembl chr 1:202,700,578...202,714,798 		JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 located_in ISO (PMID:14520415) RGD PMID:14520415 NCBI chr 6:118,198,186...118,252,422
Ensembl chr 6:118,198,201...118,252,418 		JBrowse link
G Ush1g USH1 protein network component sans located_in ISO (PMID:17906286) RGD PMID:17906286 NCBI chr10:100,559,721...100,563,590
Ensembl chr10:100,557,629...100,563,590 		JBrowse link
G Ush2a usherin located_in IDA
ISO
IEA		 (PMID:17906286), (PMID:21212183)
GO_REF:0000107		 RGD
Ensembl		 PMID:17906286 PMID:21212183 PMID:16434480 GO_REF:0000107, RGD:1600128 NCBI chr13:99,837,445...100,503,935
Ensembl chr13:99,837,445...100,503,922 		JBrowse link
G Wdr19 WD repeat domain 19 located_in ISO (PMID:19208653) RGD PMID:19208653 NCBI chr14:43,042,474...43,106,337
Ensembl chr14:43,042,478...43,106,288 		JBrowse link
G Whrn whirlin located_in IDA
ISO
IEA		 (PMID:17906286), (PMID:21212183)
GO_REF:0000107		 RGD
Ensembl		 PMID:17906286 PMID:21212183 PMID:16434480 GO_REF:0000107, RGD:1600128 NCBI chr 5:76,828,308...76,911,945
Ensembl chr 5:76,828,301...76,912,223 		JBrowse link
photoreceptor distal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 located_in ISO (PMID:29899041) RGD PMID:29899041 NCBI chr 1:15,762,485...15,891,213
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Cep290 centrosomal protein 290 located_in ISO (PMID:29899041) RGD PMID:29899041 NCBI chr 7:35,310,071...35,399,388
Ensembl chr 7:35,310,199...35,399,392 		JBrowse link
G Nphp1 nephrocystin 1 located_in ISO (PMID:29899041) RGD PMID:29899041 NCBI chr 3:114,960,650...115,016,234
Ensembl chr 3:114,960,650...115,016,234 		JBrowse link
G Nphp4 nephrocystin 4 located_in ISO (PMID:29899041) RGD PMID:29899041 NCBI chr 5:162,986,157...163,073,708
Ensembl chr 5:162,988,370...163,073,706 		JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator located_in ISO (PMID:29899041) RGD PMID:29899041 NCBI chr  X:12,566,447...12,628,171
Ensembl chr  X:12,566,645...12,747,882 		JBrowse link
G Rpgrip1 RPGR interacting protein 1 located_in ISO (PMID:29899041) RGD PMID:29899041 NCBI chr15:24,814,576...24,867,522
Ensembl chr15:24,814,614...24,868,605 		JBrowse link
G Spata7 spermatogenesis associated 7 located_in
is_active_in		 IEA
IBA
ISO		 GO_REF:0000107
GO_REF:0000033
MGI:5660490 (PMID:29899041)		 Ensembl
GO_Central
RGD		 PMID:29899041 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:117,879,828...117,925,284
Ensembl chr 6:117,879,823...117,925,284 		JBrowse link
photoreceptor proximal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cep290 centrosomal protein 290 located_in ISO (PMID:29899041) RGD PMID:29899041 NCBI chr 7:35,310,071...35,399,388
Ensembl chr 7:35,310,199...35,399,392 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20832
    cellular anatomical structure 20632
      ciliary transition zone 82
        photoreceptor connecting cilium 48
          photoreceptor distal connecting cilium 7
          photoreceptor proximal connecting cilium 1
Path 2
Term Annotations click to browse term
  cellular_component 20832
    cellular anatomical structure 20632
      cell projection 2659
        plasma membrane bounded cell projection 2567
          cilium 815
            non-motile cilium 181
              9+0 non-motile cilium 137
                photoreceptor cell cilium 123
                  photoreceptor connecting cilium 48
                    photoreceptor distal connecting cilium 7
                    photoreceptor proximal connecting cilium 1
paths to the root