Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:vesicle lumen
go back to main search page
Accession:GO:0031983 term browser browse the term
Definition:The volume enclosed by the membrane or protein that forms a vesicle.
Synonyms:xref: NIF_Subcellular:sao797538226


show annotations for term's descendants           Sort by:
vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apob apolipoprotein B located_in ISO RGD
GO_Central		 PMID:12091487 GO_REF:0000096 RGD:1626402 NCBI chr12:8,027,629...8,066,839
Ensembl chr12:8,027,648...8,066,835 		JBrowse link
acrosomal lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spaca7 sperm acrosome associated 7 located_in IEA UniProt GO_REF:0000044 NCBI chr 8:12,623,038...12,650,744
Ensembl chr 8:12,623,029...12,650,744 		JBrowse link
G Spata31 spermatogenesis associated 31 located_in IEA UniProt GO_REF:0000044 NCBI chr13:65,065,220...65,071,009
Ensembl chr13:65,065,220...65,071,008 		JBrowse link
G Zp3r zona pellucida 3 receptor located_in IEA UniProt GO_REF:0000044 NCBI chr 1:130,474,847...130,557,371
Ensembl chr 1:130,504,450...130,557,358 		JBrowse link
azurophil granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prss57 serine protease 57 located_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr10:79,617,308...79,630,523
Ensembl chr10:79,617,308...79,626,795 		JBrowse link
G Prtn3 proteinase 3 located_in ISO GO_Central GO_REF:0000119 NCBI chr10:79,715,499...79,719,008
Ensembl chr10:79,710,310...79,719,008 		JBrowse link
chromaffin granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbh dopamine beta hydroxylase located_in IEA UniProt GO_REF:0000044 NCBI chr 2:27,055,519...27,073,216
Ensembl chr 2:27,055,245...27,073,212 		JBrowse link
G Penk preproenkephalin located_in IEA UniProt GO_REF:0000044 NCBI chr 4:4,133,536...4,138,815
Ensembl chr 4:4,133,531...4,138,819 		JBrowse link
cytoplasmic vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase located_in IEA UniProt GO_REF:0000044 NCBI chr 2:163,565,703...163,592,154
Ensembl chr 2:163,568,504...163,592,159 		JBrowse link
G Fasl Fas ligand located_in IEA UniProt GO_REF:0000044 NCBI chr 1:161,608,260...161,616,064
Ensembl chr 1:161,608,258...161,616,064 		JBrowse link
G Lcn2 lipocalin 2 located_in IEA UniProt GO_REF:0000044 NCBI chr 2:32,274,649...32,277,751
Ensembl chr 2:32,274,645...32,278,264 		JBrowse link
G Serpini1 serine (or cysteine) peptidase inhibitor, clade I, member 1 located_in ISO GO_Central GO_REF:0000119 NCBI chr 3:75,464,800...75,549,830
Ensembl chr 3:75,464,854...75,550,802 		JBrowse link
multivesicular body, internal vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egfr epidermal growth factor receptor located_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr11:16,700,153...16,868,158
Ensembl chr11:16,702,203...16,868,158 		JBrowse link
neuronal dense core vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcyap1 adenylate cyclase activating polypeptide 1 is_active_in
located_in		 ISO
IEA		 PMID:9792613 SynGO
Ensembl		 PMID:9792613 GO_REF:0000107 RGD:2312463 NCBI chr17:93,506,448...93,513,967
Ensembl chr17:93,506,445...93,513,965 		JBrowse link
G Cck cholecystokinin is_active_in ISO PMID:6084830 SynGO PMID:6084830 RGD:405650225 NCBI chr 9:121,318,890...121,324,728
Ensembl chr 9:121,318,890...121,324,760 		JBrowse link
G Crh corticotropin releasing hormone is_active_in
located_in		 ISO
IEA		 PMID:19003957 SynGO
Ensembl		 PMID:19003957 GO_REF:0000107 RGD:405650366 NCBI chr 3:19,747,565...19,749,560
Ensembl chr 3:19,747,565...19,749,560 		JBrowse link
G Ghrl ghrelin is_active_in IDA (PMID:12597862) SynGO PMID:12597862 NCBI chr 6:113,693,080...113,696,872
Ensembl chr 6:113,693,080...113,696,841 		JBrowse link
G Hcrt hypocretin is_active_in
located_in		 ISO
IEA		 PMID:9419374 SynGO
Ensembl		 PMID:9419374 GO_REF:0000107 RGD:1298943 NCBI chr11:100,652,519...100,653,757
Ensembl chr11:100,651,895...100,653,757 		JBrowse link
G Igf1 insulin-like growth factor 1 is_active_in IDA
IMP		 (PMID:28683263) SynGO PMID:28683263 NCBI chr10:87,694,127...87,772,909
Ensembl chr10:87,694,127...87,772,904 		JBrowse link
G Pdyn prodynorphin is_active_in ISO GO_Central GO_REF:0000096 NCBI chr 2:129,528,469...129,541,858
Ensembl chr 2:129,528,485...129,541,764 		JBrowse link
G Penk preproenkephalin located_in
is_active_in		 IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000096 GO_REF:0000107 NCBI chr 4:4,133,536...4,138,815
Ensembl chr 4:4,133,531...4,138,819 		JBrowse link
G Vps13a vacuolar protein sorting 13A located_in IDA (PMID:22366033) UniProt PMID:22366033 NCBI chr19:16,592,730...16,758,433
Ensembl chr19:16,592,730...16,758,297 		JBrowse link
secretory granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbh dopamine beta hydroxylase located_in ISO
IDA		 (PMID:7961964) GO_Central
UniProt		 PMID:7961964 GO_REF:0000119 NCBI chr 2:27,055,519...27,073,216
Ensembl chr 2:27,055,245...27,073,212 		JBrowse link
G Gcg glucagon located_in TAS Reactome Reactome:R-MMU-508205 Reactome:R-MMU-508217 NCBI chr 2:62,304,874...62,313,997
Ensembl chr 2:62,304,874...62,313,994 		JBrowse link
G Gip gastric inhibitory polypeptide located_in TAS Reactome Reactome:R-MMU-508227 NCBI chr11:95,915,358...95,921,657
Ensembl chr11:95,915,371...95,921,657 		JBrowse link
G Grp gastrin releasing peptide located_in ISS UniProt GO_REF:0000024 NCBI chr18:66,005,826...66,019,670
Ensembl chr18:66,005,891...66,019,667 		JBrowse link
G Ins1 insulin I located_in TAS Reactome Reactome:R-MMU-216806 Reactome:R-MMU-216852 Reactome:R-MMU-216883 Reactome:R-MMU-9023194 Reactome:R-MMU-9023204 NCBI chr19:52,252,735...52,253,453
Ensembl chr19:52,252,735...52,253,914 		JBrowse link
G Ins2 insulin II located_in TAS Reactome Reactome:R-MMU-216806 Reactome:R-MMU-216852 Reactome:R-MMU-216883 Reactome:R-MMU-9023194 Reactome:R-MMU-9023204 NCBI chr 7:142,232,393...142,233,463
Ensembl chr 7:142,232,393...142,297,118 		JBrowse link
G Pcsk1 proprotein convertase subtilisin/kexin type 1 located_in TAS Reactome Reactome:R-MMU-216806 Reactome:R-MMU-508205 Reactome:R-MMU-508217 Reactome:R-MMU-508227 NCBI chr13:75,237,407...75,282,980
Ensembl chr13:75,237,945...75,282,980 		JBrowse link
G Pcsk2 proprotein convertase subtilisin/kexin type 2 located_in TAS Reactome Reactome:R-MMU-216806 NCBI chr 2:143,388,053...143,658,204
Ensembl chr 2:143,388,076...143,658,205 		JBrowse link
G Serpini1 serine (or cysteine) peptidase inhibitor, clade I, member 1 located_in IDA (PMID:17040209) UniProt PMID:17040209 NCBI chr 3:75,464,800...75,549,830
Ensembl chr 3:75,464,854...75,550,802 		JBrowse link
synaptic vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Penk preproenkephalin located_in
is_active_in		 IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000096 GO_REF:0000107 NCBI chr 4:4,133,536...4,138,815
Ensembl chr 4:4,133,531...4,138,819 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 28566
    cellular anatomical structure 19592
      membrane-enclosed lumen 5010
        organelle lumen 5010
          vesicle lumen 28
            cytoplasmic vesicle lumen + 26
            multivesicular body, internal vesicle lumen 1
Path 2
Term Annotations click to browse term
  cellular_component 28566
    cellular anatomical structure 19592
      organelle 13698
        membrane-bounded organelle 12699
          vesicle 2431
            vesicle lumen 28
              cytoplasmic vesicle lumen + 26
              multivesicular body, internal vesicle lumen 1
paths to the root