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ONTOLOGY REPORT - ANNOTATIONS

Term:microbody lumen
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Accession:GO:0031907 term browser browse the term
Definition:The volume enclosed by the membranes of a microbody.


show annotations for term's descendants           Sort by:
peroxisomal matrix term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcd3 ATP binding cassette subfamily D member 3 located_in ISO (PMID:9765053) RGD PMID:9765053 NCBI chr 2:209,852,087...209,905,763
Ensembl chr 2:209,852,087...209,906,020 		JBrowse link
G Acot8 acyl-CoA thioesterase 8 located_in
is_active_in		 ISO
IBA
IEA		 (PMID:10092594), (PMID:14709540)
GO_REF:0000033
GO_REF:0000044		 RGD
GO_Central
UniProt		 PMID:10092594 PMID:14709540 GO_REF:0000033 GO_REF:0000044 NCBI chr 3:153,531,192...153,542,851
Ensembl chr 3:153,531,193...153,542,851 		JBrowse link
G Acox1 acyl-CoA oxidase 1 located_in TAS Reactome:R-NUL-9034341 Reactome Reactome:R-NUL-9034341 NCBI chr10:101,406,197...101,431,252
Ensembl chr10:101,406,197...101,431,232 		JBrowse link
G Agxt alanine--glyoxylate aminotransferase located_in ISO (PMID:22198249), (PMID:3418107) RGD PMID:3418107 PMID:22198249 NCBI chr 9:93,675,384...93,685,337
Ensembl chr 9:93,675,384...93,685,336 		JBrowse link
G Atm ATM serine/threonine kinase is_active_in ISO (PMID:26344566) RGD PMID:26344566 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437 		JBrowse link
G Cat catalase located_in IDA PMID:26961980 UniProt PMID:26961980 RGD:405650387 NCBI chr 3:89,842,393...89,874,577
Ensembl chr 3:89,842,399...89,874,478 		JBrowse link
G Dao D-amino-acid oxidase located_in IDA
ISO		 PMID:2896644
(PMID:17684499), (PMID:18544534), (PMID:21679769), (PMID:23219954), (PMID:31799256)
(PMID:33725110)
PMID:26961980
(PMID:1686595)		 RGD PMID:1686595 PMID:17684499 PMID:18544534 PMID:21679769 PMID:23219954 More... RGD:401901227, RGD:405650387 NCBI chr12:42,592,342...42,613,046
Ensembl chr12:42,592,343...42,612,741 		JBrowse link
G Ddo D-aspartate oxidase located_in ISS
IEA		 GO_REF:0000024
GO_REF:0000044		 UniProt GO_REF:0000024 GO_REF:0000044 NCBI chr20:44,090,823...44,109,962
Ensembl chr20:44,090,914...44,133,095 		JBrowse link
G Eci2 enoyl-CoA delta isomerase 2 located_in ISO
IEA		 (PMID:10419495)
GO_REF:0000044		 RGD
UniProt		 PMID:10419495 GO_REF:0000044 NCBI chr17:29,850,884...29,886,781
Ensembl chr17:29,870,391...29,886,781 		JBrowse link
G Fabp1 fatty acid binding protein 1 IDA low level constitutive localization increased by clofibrate RGD PMID:16262600 RGD:1626442 NCBI chr 4:103,191,015...103,194,791
Ensembl chr 4:103,191,006...103,194,788 		JBrowse link
G Hao1 hydroxyacid oxidase 1 located_in
is_active_in		 ISO
IBA		 (PMID:10777549)
GO_REF:0000033		 RGD
GO_Central		 PMID:10777549 GO_REF:0000033 NCBI chr 3:121,757,400...121,828,721
Ensembl chr 3:121,771,836...121,828,721 		JBrowse link
G Hao2 hydroxyacid oxidase 2 located_in
is_active_in		 ISO
IEA
IBA		 (PMID:10777549)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:10777549 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:186,200,137...186,232,997
Ensembl chr 2:186,200,504...186,224,425 		JBrowse link
G Hspd1 heat shock protein family D (Hsp60) member 1 IDA RGD PMID:8882520 RGD:10403038 NCBI chr 9:56,579,195...56,590,011
Ensembl chr 9:56,579,201...56,589,662 		JBrowse link
G Hspe1 heat shock protein family E (Hsp10) member 1 ISO RGD PMID:8882520 RGD:10403038 NCBI chr 9:56,589,912...56,593,000
Ensembl chr 9:56,589,789...56,593,089 		JBrowse link
G Ide insulin degrading enzyme is_active_in IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:11235899 GO_REF:0000033, RGD:1627575 NCBI chr 1:235,002,984...235,102,448
Ensembl chr 1:234,995,351...235,102,440 		JBrowse link
G Lonp2 lon peptidase 2, peroxisomal located_in
is_active_in		 IDA
IEA
IBA		 PMID:14561759
GO_REF:0000044
GO_REF:0000033		 UniProt
GO_Central
RGD		 PMID:14561759 PMID:14561759 GO_REF:0000033 GO_REF:0000044, RGD:1580664, RGD:1580664 NCBI chr19:20,407,475...20,498,985
Ensembl chr19:20,407,477...20,499,014 		JBrowse link
G Mlycd malonyl-CoA decarboxylase located_in
is_active_in		 IDA
IBA		 PMID:16298369
GO_REF:0000033		 GO_Central PMID:16298369 GO_REF:0000033, RGD:1600793 NCBI chr19:47,447,931...47,463,794
Ensembl chr19:47,447,970...47,463,793 		JBrowse link
G Mvd mevalonate diphosphate decarboxylase IDA RGD PMID:11767099 RGD:729305 NCBI chr19:50,496,366...50,506,429
Ensembl chr19:50,496,367...50,507,971 		JBrowse link
G Paox polyamine oxidase IDA RGD PMID:7560898 RGD:7244191 NCBI chr 1:194,919,655...194,928,498
Ensembl chr 1:194,903,273...194,928,504 		JBrowse link
G Pex5 peroxisomal biogenesis factor 5 located_in
is_active_in		 ISO
ISS
IEA		 (PMID:11336669)
GO_REF:0000024
(PMID:11546814)
(PMID:16314507), (PMID:24662292), (PMID:33389129)
GO_REF:0000044		 RGD
UniProt		 PMID:11336669 PMID:11546814 PMID:16314507 PMID:24662292 PMID:33389129 GO_REF:0000024 GO_REF:0000044 NCBI chr 4:157,270,671...157,296,432
Ensembl chr 4:157,270,672...157,296,431 		JBrowse link
G Pex7 peroxisomal biogenesis factor 7 located_in
is_active_in		 ISO
IBA		 (PMID:11931631)
(PMID:11546814), (PMID:25538232)
GO_REF:0000033		 RGD
GO_Central		 PMID:11546814 PMID:11931631 PMID:25538232 GO_REF:0000033 NCBI chr 1:14,582,698...14,646,686
Ensembl chr 1:14,582,699...14,646,748 		JBrowse link
G Pomc proopiomelanocortin located_in ISO (PMID:20810565) RGD PMID:20810565 NCBI chr 6:26,939,844...26,945,666
Ensembl chr 6:26,939,837...26,945,664 		JBrowse link
G Prdx1 peroxiredoxin 1 IDA RGD PMID:14623930 RGD:2291802 NCBI chr 5:130,147,258...130,162,856
Ensembl chr 5:130,147,204...130,162,856 		JBrowse link
G Prdx5 peroxiredoxin 5 located_in IEA
ISO		 GO_REF:0000044
(PMID:10514471)		 UniProt
RGD		 PMID:10514471 GO_REF:0000044 NCBI chr 1:204,099,826...204,103,589
Ensembl chr 1:204,099,826...204,114,268 		JBrowse link
G Scp2 sterol carrier protein 2 located_in IDA PMID:8063752 RGD
UniProt		 PMID:8063752 PMID:8063752 RGD:9850162, RGD:9850162 NCBI chr 5:122,806,949...122,881,259
Ensembl chr 5:122,776,549...122,881,287 		JBrowse link
G Uox urate oxidase TAS RGD PMID:3182808 RGD:730101 NCBI chr 2:235,486,867...235,523,053
Ensembl chr 2:235,440,619...235,523,029 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20833
    cellular anatomical structure 20633
      cytoplasm 11893
        microbody 164
          microbody lumen 26
            peroxisomal matrix + 26
Path 2
Term Annotations click to browse term
  cellular_component 20833
    cellular anatomical structure 20633
      organelle 13975
        intracellular organelle 13569
          intracellular membrane-bounded organelle 12009
            microbody 164
              microbody lumen 26
                peroxisomal matrix + 26
paths to the root