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ONTOLOGY REPORT - ANNOTATIONS

Term:endosome lumen
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Accession:GO:0031904 term browser browse the term
Definition:The volume enclosed by the membrane of an endosome.
Synonyms:xref: NIF_Subcellular:sao1547508851


show annotations for term's descendants           Sort by:
endosome lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd63 Cd63 molecule located_in ISO
IEA		 (PMID:22660413)
GO_REF:0000107		 RGD
Ensembl		 PMID:22660413 GO_REF:0000107 NCBI chr 7:1,325,108...1,340,447
Ensembl chr 7:1,325,103...1,399,178 		JBrowse link
G Ctsd cathepsin D is_active_in
located_in		 ISO
IEA		 (PMID:27703010)
GO_REF:0000107		 RGD
Ensembl		 PMID:27703010 GO_REF:0000107 NCBI chr 1:197,527,467...197,539,343
Ensembl chr 1:197,527,467...197,539,488 		JBrowse link
G Ide insulin degrading enzyme is_active_in ISO (PMID:27703010) RGD PMID:27703010 NCBI chr 1:235,002,984...235,102,448
Ensembl chr 1:234,995,351...235,102,440 		JBrowse link
G Lrp2 LDL receptor related protein 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:54,189,305...54,346,769
Ensembl chr 3:54,189,308...54,346,708 		JBrowse link
G Lrpap1 LDL receptor related protein associated protein 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr14:75,651,371...75,663,380
Ensembl chr14:75,651,376...75,665,414 		JBrowse link
G Ngf nerve growth factor located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:189,901,058...189,954,452
Ensembl chr 2:189,901,058...189,954,452 		JBrowse link
G Prf1 perforin 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr20:29,246,202...29,251,712
Ensembl chr20:29,246,202...29,251,701 		JBrowse link
G Ptpn1 protein tyrosine phosphatase, non-receptor type 1 is_active_in ISO (PMID:23639442) RGD PMID:23639442 NCBI chr 3:156,638,811...156,687,503
Ensembl chr 3:156,638,769...156,687,504 		JBrowse link
G Ptpn2 protein tyrosine phosphatase, non-receptor type 2 located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:12612081)		 Ensembl
RGD		 PMID:12612081 GO_REF:0000107 NCBI chr18:61,229,012...61,294,662
Ensembl chr18:61,229,014...61,294,627 		JBrowse link
early endosome lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdlim4 PDZ and LIM domain 4 located_in IDA PMID:15456832 UniProt PMID:15456832 RGD:13432260 NCBI chr10:38,198,686...38,212,935
Ensembl chr10:38,198,689...38,212,938 		JBrowse link
G Rab32 RAB32, member RAS oncogene family NOT|located_in ISO (PMID:22511774) RGD PMID:22511774 NCBI chr 1:4,946,193...4,961,003
Ensembl chr 1:4,945,036...4,960,934 		JBrowse link
G Rab38 RAB38, member RAS oncogene family NOT|located_in ISO (PMID:22511774) RGD PMID:22511774 NCBI chr 1:142,182,566...142,262,923
Ensembl chr 1:142,182,556...142,262,924 		JBrowse link
recycling endosome lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdlim4 PDZ and LIM domain 4 located_in IDA PMID:15456832 UniProt PMID:15456832 RGD:13432260 NCBI chr10:38,198,686...38,212,935
Ensembl chr10:38,198,689...38,212,938 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20832
    cellular anatomical structure 20632
      endomembrane system 4342
        endosome 947
          endosome lumen 12
            early endosome lumen 3
            endolysosome lumen 0
            late endosome lumen + 0
            recycling endosome lumen 1
Path 2
Term Annotations click to browse term
  cellular_component 20832
    cellular anatomical structure 20632
      intracellular anatomical structure 15188
        intracellular organelle 13568
          intracellular membrane-bounded organelle 12009
            intracellular vesicle 2058
              cytoplasmic vesicle 2049
                endosome 947
                  endosome lumen 12
                    early endosome lumen 3
                    endolysosome lumen 0
                    late endosome lumen + 0
                    recycling endosome lumen 1
paths to the root