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ONTOLOGY REPORT - ANNOTATIONS

Term:endosome lumen
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Accession:GO:0031904 term browser browse the term
Definition:The volume enclosed by the membrane of an endosome.
Synonyms:xref: NIF_Subcellular:sao1547508851


show annotations for term's descendants           Sort by:
endosome lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd63 Cd63 molecule located_in ISO
IEA 		(PMID:22660413)
GO_REF:0000107 		RGD
Ensembl		 PMID:22660413 GO_REF:0000107 NCBI chr 7:1,909,538...1,924,937
Ensembl chr 7:1,922,169...1,924,938 		JBrowse link
G Ctsd cathepsin D is_active_in ISO
IEA 		(PMID:27703010)
GO_REF:0000107 		RGD
Ensembl		 PMID:27703010 GO_REF:0000107 NCBI chr 1:206,956,945...206,968,821
Ensembl chr 1:206,956,944...206,968,821 		JBrowse link
G Ide insulin degrading enzyme is_active_in ISO (PMID:27703010) RGD PMID:27703010 NCBI chr 1:244,415,495...244,516,925
Ensembl chr 1:244,416,343...244,514,526 		JBrowse link
G Il12b interleukin 12B located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr10:29,390,300...29,405,194
Ensembl chr10:29,389,905...29,405,194 		JBrowse link
G Lrp2 LDL receptor related protein 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:74,597,148...74,754,535
Ensembl chr 3:74,597,148...74,754,535 		JBrowse link
G Lrpap1 LDL receptor related protein associated protein 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr14:79,876,002...79,888,011
Ensembl chr14:79,875,708...79,890,034 		JBrowse link
G Ngf nerve growth factor located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:192,589,580...192,642,971
Ensembl chr 2:192,589,582...192,643,834 		JBrowse link
G Prf1 perforin 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr20:29,789,040...29,794,550
Ensembl chr20:29,788,972...29,795,124 		JBrowse link
G Ptpn1 protein tyrosine phosphatase, non-receptor type 1 is_active_in ISO
IEA 		(PMID:23639442)
GO_REF:0000107 		RGD
Ensembl		 PMID:23639442 GO_REF:0000107 NCBI chr 3:177,056,588...177,106,424
Ensembl chr 3:177,057,659...177,106,416 		JBrowse link
G Ptpn2 protein tyrosine phosphatase, non-receptor type 2 is_active_in ISO
IEA 		(PMID:12612081)
GO_REF:0000107 		RGD
Ensembl		 PMID:12612081 GO_REF:0000107 NCBI chr18:63,498,890...63,564,571
Ensembl chr18:63,498,890...63,564,481 		JBrowse link
early endosome lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdlim4 PDZ and LIM domain 4 located_in IDA PMID:15456832 UniProt PMID:15456832 RGD:13432260 NCBI chr10:38,699,444...38,713,696
Ensembl chr10:38,699,444...38,713,659 		JBrowse link
G Rab32 RAB32, member RAS oncogene family NOT|located_in ISO (PMID:22511774) RGD PMID:22511774 NCBI chr 1:6,766,448...6,781,258
Ensembl chr 1:6,766,455...6,781,258 		JBrowse link
G Rab38 RAB38, member RAS oncogene family NOT|located_in ISO (PMID:22511774) RGD PMID:22511774 NCBI chr 1:151,595,153...151,675,492
Ensembl chr 1:151,595,078...151,675,493 		JBrowse link
recycling endosome lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdlim4 PDZ and LIM domain 4 located_in IDA PMID:15456832 UniProt PMID:15456832 RGD:13432260 NCBI chr10:38,699,444...38,713,696
Ensembl chr10:38,699,444...38,713,659 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21544
    cellular anatomical structure 21390
      endomembrane system 4593
        endosome 1001
          endosome lumen 13
            early endosome lumen 3
            endolysosome lumen 0
            late endosome lumen + 0
            recycling endosome lumen 1
Path 2
Term Annotations click to browse term
  cellular_component 21544
    cellular anatomical structure 21390
      intracellular anatomical structure 15814
        intracellular organelle 14062
          intracellular membrane-bounded organelle 12498
            intracellular vesicle 2193
              cytoplasmic vesicle 2185
                endosome 1001
                  endosome lumen 13
                    early endosome lumen 3
                    endolysosome lumen 0
                    late endosome lumen + 0
                    recycling endosome lumen 1
paths to the root