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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleosomal DNA binding
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Accession:GO:0031492 term browser browse the term
Definition:Binding to the DNA portion of a nucleosome.


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nucleosomal DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmga2 high mobility group AT-hook 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:3,944,419...3,958,289
Ensembl chrNW_004936545:3,944,419...4,064,193
JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936500:3,845,320...3,852,000
Ensembl chrNW_004936500:3,847,517...3,852,039
JBrowse link
G Hmgn3 high mobility group nucleosomal binding domain 3 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936510:10,923,014...10,954,354
Ensembl chrNW_004936510:10,923,009...10,954,354
JBrowse link
G Hmgn5 high mobility group nucleosome binding domain 5 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936547:2,607,491...2,614,037 JBrowse link
G LOC101955795 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936566:2,434,081...2,434,350 JBrowse link
G LOC101956023 uncharacterized LOC101956023 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936474:10,951,065...10,952,654
Ensembl chrNW_004936474:10,951,040...10,952,622
JBrowse link
G LOC101956464 non-histone chromosomal protein HMG-17 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936542:8,395,521...8,395,897 JBrowse link
G LOC101956825 non-histone chromosomal protein HMG-17 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936487:9,155,533...9,156,763 JBrowse link
G LOC101958619 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936471:36,589,205...36,589,581 JBrowse link
G LOC101963041 histone H3.3A enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chrNW_004936526:2,835,002...2,842,328 JBrowse link
G LOC101963257 histone H3.3A enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chrNW_004936594:959,493...961,703
Ensembl chrNW_004936594:958,049...961,708
JBrowse link
G LOC101965662 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936626:2,238,897...2,240,015 JBrowse link
G LOC101966029 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936523:2,611,759...2,612,147 JBrowse link
G LOC101966642 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936622:837,413...838,563 JBrowse link
G LOC101970440 histone H1.0 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936492:3,314,991...3,315,974
Ensembl chrNW_004936492:3,315,048...3,315,632
JBrowse link
G LOC101971055 histone H1.8 enables ISO (PMID:22868987) UniProt PMID:22868987 NCBI chrNW_004936602:885,478...890,014 JBrowse link
G LOC101971629 core histone macro-H2A.1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936597:2,496,489...2,556,352
Ensembl chrNW_004936597:2,495,862...2,556,603
JBrowse link
G LOC101974663 histone H2A.Z enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chrNW_004936520:3,059,623...3,061,941 JBrowse link
G Rcc1 regulator of chromosome condensation 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:12,635,175...12,646,907
Ensembl chrNW_004936474:12,635,175...12,647,231
JBrowse link
G Smarce1 SWI/SNF related BAF chromatin remodeling complex subunit E1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936490:15,638,546...15,659,372
Ensembl chrNW_004936490:15,638,526...15,659,706
JBrowse link
G Vrk1 VRK serine/threonine kinase 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936604:1,011,048...1,097,388
Ensembl chrNW_004936604:1,011,052...1,097,403
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 18185
    binding 16296
      chromatin binding 641
        chromatin DNA binding 113
          nucleosomal DNA binding 21
Path 2
Term Annotations click to browse term
  molecular_function 18185
    binding 16296
      nucleic acid binding 4003
        DNA binding 1942
          chromatin DNA binding 113
            nucleosomal DNA binding 21
paths to the root