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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleosomal DNA binding
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Accession:GO:0031492 term browser browse the term
Definition:Binding to the DNA portion of a nucleosome.



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nucleosomal DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07053402.1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002
G AABR07053884.1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002
G ENSRNOG00000064141 enables IEA GO_REF:0000002 InterPro GO_REF:0000002
G ENSRNOG00000064384 enables IEA GO_REF:0000002 InterPro GO_REF:0000002
G ENSRNOG00000068549 enables IEA GO_REF:0000002 InterPro GO_REF:0000002
G H1f0 H1.0 linker histone enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:112,473,280...112,475,140 JBrowse link
G H1f1 H1.1 linker histone, cluster member enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,762,278...41,794,876 JBrowse link
G H1f10 H1.10 linker histone enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:121,997,834...121,998,897 JBrowse link
G H1f2 H1.2 linker histone, cluster member enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,391,106...41,392,597 JBrowse link
G H1f4 H1.4 linker histone, cluster member enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,486,574...41,487,355 JBrowse link
G H1f5 H1.5 linker histone, cluster member enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:42,726,132...42,727,162 JBrowse link
G H1f6 H1.6 linker histone, cluster member enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,427,365...41,428,109 JBrowse link
G H1f7 H1.7 linker histone enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:129,408,521...129,409,888 JBrowse link
G H1f8 H1.8 linker histone enables ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:22868987)
CAFA
GO_Central
RGD
PMID:22868987 GO_REF:0000024 GO_REF:0000033 NCBI chr 4:148,993,133...148,998,254 JBrowse link
G H2az1 H2A.Z variant histone 1 enables ISO (PMID:19633671) RGD PMID:19633671 NCBI chr 2:226,355,668...226,357,984 JBrowse link
G H3cl H3 clustered histone like enables ISO (PMID:27016736) RGD PMID:27016736 NCBI chr17:41,372,194...41,378,877 JBrowse link
G H3f3a H3.3 histone A enables ISO (PMID:19633671) RGD PMID:19633671 NCBI chr13:92,533,289...92,544,902 JBrowse link
G H3f3b H3.3 histone B enables ISO (PMID:19633671) RGD PMID:19633671 NCBI chr10:101,256,484...101,258,716 JBrowse link
G H4f3 H1.3 linker histone, cluster member enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,551,524...41,552,303 JBrowse link
G Hils1 histone linker H1 domain, spermatid-specific 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:79,913,525...79,914,321 JBrowse link
G Hmga2 high mobility group AT-hook 2 enables ISO
ISS
(PMID:17078040)
GO_REF:0000024
RGD
UniProt
PMID:17078040 GO_REF:0000024 NCBI chr 7:57,762,710...57,884,555 JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:35,422,328...35,428,247 JBrowse link
G Hmgn1-ps6 high mobility group nucleosome binding domain 1, pseudogene 6 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr14:60,030,310...60,030,603 JBrowse link
G Hmgn1l1 high mobility group nucleosomal binding domain 1 like 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:38,604,856...38,606,026 JBrowse link
G Hmgn2 high mobility group nucleosomal binding domain 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:146,192,126...146,195,580 JBrowse link
G Hmgn2-ps3 high mobility group nucleosomal binding domain 2, pseudogene 3 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:99,990,743...99,991,003 JBrowse link
G Hmgn2-ps4 high mobility group nucleosomal binding domain 2, pseudogene 4 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:30,633,287...30,634,512 JBrowse link
G Hmgn2l2 high mobility group nucleosomal binding domain 2 like 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:57,618,690...57,618,983 JBrowse link
G Hmgn2l3 high mobility group nucleosomal binding domain 2 like 3 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:83,520,046...83,520,312 JBrowse link
G Hmgn3 high mobility group nucleosomal binding domain 3 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:84,022,493...84,059,329 JBrowse link
G Hmgn5 high mobility group nucleosome binding domain 5 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:74,085,871...74,094,488 JBrowse link
G Hmgn5b high mobility group nucleosome binding domain 5B enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:117,222,188...117,224,158 JBrowse link
G LOC120093100 non-histone chromosomal protein HMG-14-like enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:44,016,858...44,017,148 JBrowse link
G LOC120093784 non-histone chromosomal protein HMG-14-like enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:15,148,859...15,151,046 JBrowse link
G Macroh2a1 macroH2A.1 histone enables ISO (PMID:20008927)
(PMID:18936163)
RGD PMID:18936163 PMID:20008927 NCBI chr17:8,479,331...8,542,071 JBrowse link
G Rcc1 regulator of chromosome condensation 1 enables ISO (PMID:17435751) RGD PMID:17435751 NCBI chr 5:144,526,025...144,544,445 JBrowse link
G Vrk1 VRK serine/threonine kinase 1 enables ISO (PMID:35390161) RGD PMID:35390161 NCBI chr 6:124,914,770...124,981,508 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 21086
    binding 18085
      chromatin binding 691
        chromatin DNA binding 133
          nucleosomal DNA binding 37
Path 2
Term Annotations click to browse term
  molecular_function 21086
    binding 18085
      nucleic acid binding 3917
        DNA binding 2329
          chromatin DNA binding 133
            nucleosomal DNA binding 37
paths to the root