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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleosomal DNA binding
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Accession:GO:0031492 term browser browse the term
Definition:Binding to the DNA portion of a nucleosome.


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nucleosomal DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H1-1 H1.1 linker histone, cluster member enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624756:885,994...901,354
Ensembl chrNW_004624756:885,994...886,641
JBrowse link
G Hmga2 high mobility group AT-hook 2 enables ISO (PMID:17078040) UniProt PMID:17078040 NCBI chrNW_004624802:2,337,344...2,468,757
Ensembl chrNW_004624802:2,337,464...2,467,990
JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624745:24,659,391...24,665,874
Ensembl chrNW_004624745:24,659,334...24,665,221
JBrowse link
G Hmgn2 high mobility group nucleosomal binding domain 2 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624764:10,477,276...10,480,980 JBrowse link
G Hmgn3 high mobility group nucleosomal binding domain 3 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624819:5,831,031...5,860,249
Ensembl chrNW_004624819:5,830,311...5,860,141
JBrowse link
G LOC101698172 histone H3.3 enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chrNW_004624801:5,668,661...5,672,164 JBrowse link
G LOC101699418 histone H3.3 enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chrNW_004624807:194,372...203,205 JBrowse link
G LOC101700059 histone H1oo enables ISO (PMID:22868987) UniProt PMID:22868987 NCBI chrNW_004624872:533,877...539,770 JBrowse link
G LOC101701243 histone H2A.Z enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chrNW_004624830:7,238,897...7,240,566
Ensembl chrNW_004624830:7,238,929...7,240,563
JBrowse link
G LOC101704911 recombination repair protein 1-like enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624859:252,734...260,277 JBrowse link
G LOC101706296 core histone macro-H2A.1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:11,650,067...11,714,399
Ensembl chrNW_004624733:11,650,537...11,715,999
JBrowse link
G LOC101712045 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624880:2,510,753...2,512,039 JBrowse link
G LOC101712333 high mobility group nucleosome-binding domain-containing protein 3 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624814:9,437,476...9,437,829 JBrowse link
G LOC101712482 non-histone chromosomal protein HMG-14 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624836:2,459,602...2,459,930 JBrowse link
G LOC101717518 histone H1.0 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624752:10,103,866...10,105,983 JBrowse link
G LOC101719834 non-histone chromosomal protein HMG-17 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624759:2,335,123...2,335,529 JBrowse link
G LOC101726086 histone H1.0 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624737:3,363,234...3,366,140 JBrowse link
G LOC101726503 high mobility group nucleosome-binding domain-containing protein 4 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624756:332,782...340,670 JBrowse link
G LOC106007871 non-histone chromosomal protein HMG-14-like enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624832:4,392,102...4,393,632 JBrowse link
G Rcc1 regulator of chromosome condensation 1 enables ISO (PMID:17435751) UniProt PMID:17435751 NCBI chrNW_004624764:12,316,976...12,360,673
Ensembl chrNW_004624764:12,326,738...12,362,213
JBrowse link
G Smarce1 SWI/SNF related BAF chromatin remodeling complex subunit E1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624795:2,712,524...2,730,028
Ensembl chrNW_004624795:2,714,525...2,729,961
JBrowse link
G Vrk1 VRK serine/threonine kinase 1 enables ISO (PMID:35390161) UniProt PMID:35390161 NCBI chrNW_004624734:6,595,827...6,678,139
Ensembl chrNW_004624734:6,595,814...6,678,081
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 18442
    binding 16080
      chromatin binding 642
        chromatin DNA binding 117
          nucleosomal DNA binding 22
Path 2
Term Annotations click to browse term
  molecular_function 18442
    binding 16080
      nucleic acid binding 3804
        DNA binding 2157
          chromatin DNA binding 117
            nucleosomal DNA binding 22
paths to the root