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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleosomal DNA binding
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Accession:GO:0031492 term browser browse the term
Definition:Binding to the DNA portion of a nucleosome.



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nucleosomal DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H1f0 H1.0 linker histone enables IBA GO_Central GO_REF:0000033 NCBI chr15:78,912,412...78,914,704
Ensembl chr15:78,912,650...78,914,704
JBrowse link
G H1f1 H1.1 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr13:23,947,651...23,948,395
Ensembl chr13:23,947,649...23,948,389
JBrowse link
G H1f10 H1.10 linker histone enables IBA GO_Central GO_REF:0000033 NCBI chr 6:87,957,403...87,958,464
Ensembl chr 6:87,957,403...87,958,619
JBrowse link
G H1f2 H1.2 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr13:23,922,790...23,923,514
Ensembl chr13:23,922,791...23,924,350
JBrowse link
G H1f3 H1.3 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr13:23,739,206...23,739,981
Ensembl chr13:23,737,436...23,744,860
JBrowse link
G H1f4 H1.4 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr13:23,805,760...23,806,541
Ensembl chr13:23,804,612...23,806,541
JBrowse link
G H1f5 H1.5 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr13:21,964,002...21,964,795
Ensembl chr13:21,964,053...21,964,795
JBrowse link
G H1f6 H1.6 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr13:23,879,794...23,880,528
Ensembl chr13:23,879,797...23,880,708
JBrowse link
G H1f8 H1.8 linker histone enables IDA
IBA
(PMID:22868987) UniProt
GO_Central
PMID:22868987 GO_REF:0000033 NCBI chr 6:115,921,892...115,927,203
Ensembl chr 6:115,921,899...115,927,197
JBrowse link
G H1f9 H1.9 linker histone enables IBA GO_Central GO_REF:0000033 NCBI chr11:94,858,419...94,859,282
Ensembl chr11:94,858,419...94,859,282
JBrowse link
G H2az1 H2A.Z variant histone 1 enables IEA
ISO
Ensembl
GO_Central
GO_REF:0000107 GO_REF:0000119 NCBI chr 3:137,570,248...137,572,683
Ensembl chr 3:137,570,248...137,572,683
JBrowse link
G H3f3a H3.3 histone A enables ISO GO_Central GO_REF:0000119 NCBI chr 1:180,630,125...180,641,127
Ensembl chr 1:180,628,397...180,641,508
JBrowse link
G H3f3b H3.3 histone B enables ISO GO_Central GO_REF:0000119 NCBI chr11:115,912,787...115,921,313
Ensembl chr11:115,912,738...115,918,788
JBrowse link
G H3f5 H3.5 histone enables ISO GO_Central GO_REF:0000119 NCBI chr 4:94,481,887...94,488,556
Ensembl chr 4:94,487,622...94,488,032
JBrowse link
G Hmga2 high mobility group AT-hook 2 enables ISO
ISS
GO_Central
UniProt
GO_REF:0000024 GO_REF:0000119 NCBI chr10:120,197,173...120,312,374
Ensembl chr10:120,197,180...120,312,374
JBrowse link
G Hmgn1 high mobility group nucleosomal binding domain 1 enables IEA InterPro GO_REF:0000002 NCBI chr16:95,922,788...95,928,925
Ensembl chr16:95,921,818...95,928,929
JBrowse link
G Hmgn2 high mobility group nucleosomal binding domain 2 enables IEA InterPro GO_REF:0000002 NCBI chr 4:133,692,050...133,695,302
Ensembl chr 4:133,692,049...133,695,961
JBrowse link
G Hmgn3 high mobility group nucleosomal binding domain 3 enables IEA InterPro GO_REF:0000002 NCBI chr 9:82,991,995...83,029,411
Ensembl chr 9:82,992,001...83,028,738
JBrowse link
G Hmgn5 high-mobility group nucleosome binding domain 5 enables IEA InterPro GO_REF:0000002 NCBI chr  X:108,048,143...108,056,986
Ensembl chr  X:108,048,140...108,057,010
JBrowse link
G Macroh2a1 macroH2A.1 histone enables IDA
ISO
(PMID:18936163) UniProt
GO_Central
PMID:18936163 GO_REF:0000119 NCBI chr13:56,221,435...56,283,439
Ensembl chr13:56,221,432...56,284,174
JBrowse link
G Rcc1 regulator of chromosome condensation 1 enables ISO
ISS
GO_Central
UniProt
GO_REF:0000024 GO_REF:0000119 NCBI chr 4:132,059,230...132,073,061
Ensembl chr 4:132,059,230...132,080,916
JBrowse link
G Vrk1 vaccinia related kinase 1 enables ISS
ISO
UniProt
GO_Central
GO_REF:0000024 GO_REF:0000119 NCBI chr12:105,976,398...106,044,578
Ensembl chr12:105,976,487...106,043,685
Ensembl chr12:105,976,487...106,043,685
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 28797
    binding 17596
      chromatin binding 678
        chromatin DNA binding 121
          nucleosomal DNA binding 22
Path 2
Term Annotations click to browse term
  molecular_function 28797
    binding 17596
      nucleic acid binding 3708
        DNA binding 2357
          chromatin DNA binding 121
            nucleosomal DNA binding 22
paths to the root