ONTOLOGY REPORT - ANNOTATIONS |
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Term: | nucleosomal DNA binding |
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Accession: | GO:0031492
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browse the term
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Definition: | Binding to the DNA portion of a nucleosome. |
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ACTB |
actin beta |
contributes_to |
HDA |
(PMID:16217013) |
UniProt |
PMID:16217013 |
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NCBI chr 7:5,527,148...5,530,601
Ensembl chr 7:5,526,409...5,563,902
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ACTL6A |
actin like 6A |
contributes_to |
HDA |
(PMID:16217013) |
UniProt |
PMID:16217013 |
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NCBI chr 3:179,562,926...179,588,407
Ensembl chr 3:179,562,886...179,588,407
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CHD4 |
chromodomain helicase DNA binding protein 4 |
contributes_to |
HDA |
(PMID:16217013) |
UniProt |
PMID:16217013 |
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NCBI chr12:6,570,082...6,607,379
Ensembl chr12:6,570,082...6,614,524
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GATAD2B |
GATA zinc finger domain containing 2B |
contributes_to |
HDA |
(PMID:16217013) |
UniProt |
PMID:16217013 |
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NCBI chr 1:153,804,725...153,922,972
Ensembl chr 1:153,789,030...153,923,360
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H1-0 |
H1.0 linker histone |
enables |
IBA |
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GO_Central |
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GO_REF:0000033 |
NCBI chr22:37,805,229...37,807,432
Ensembl chr22:37,805,229...37,807,432
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H1-1 |
H1.1 linker histone, cluster member |
enables |
IBA |
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GO_Central |
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GO_REF:0000033 |
NCBI chr 6:26,017,032...26,017,787
Ensembl chr 6:26,017,032...26,017,787
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H1-10 |
H1.10 linker histone |
enables |
IBA |
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GO_Central |
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GO_REF:0000033 |
NCBI chr 3:129,314,771...129,316,286
Ensembl chr 3:129,314,771...129,316,286
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H1-2 |
H1.2 linker histone, cluster member |
enables |
IBA |
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GO_Central |
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GO_REF:0000033 |
NCBI chr 6:26,055,740...26,056,470
Ensembl chr 6:26,054,760...26,056,470
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H1-3 |
H1.3 linker histone, cluster member |
enables |
IBA |
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GO_Central |
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GO_REF:0000033 |
NCBI chr 6:26,234,212...26,234,987
Ensembl chr 6:26,234,212...26,234,987
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H1-4 |
H1.4 linker histone, cluster member |
enables |
IBA |
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GO_Central |
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GO_REF:0000033 |
NCBI chr 6:26,156,329...26,157,115
Ensembl chr 6:26,156,329...26,157,115
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H1-5 |
H1.5 linker histone, cluster member |
enables |
IBA |
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GO_Central |
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GO_REF:0000033 |
NCBI chr 6:27,866,792...27,867,588
Ensembl chr 6:27,866,792...27,867,588
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H1-6 |
H1.6 linker histone, cluster member |
enables |
IBA |
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GO_Central |
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GO_REF:0000033 |
NCBI chr 6:26,107,412...26,108,135
Ensembl chr 6:26,107,412...26,108,135
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H1-7 |
H1.7 linker histone |
enables |
IBA |
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GO_Central |
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GO_REF:0000033 |
NCBI chr12:48,328,980...48,330,279
Ensembl chr12:48,328,980...48,330,279
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H1-8 |
H1.8 linker histone |
enables |
ISS IBA |
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CAFA GO_Central |
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GO_REF:0000024 GO_REF:0000033 |
NCBI chr 3:129,543,175...129,551,467
Ensembl chr 3:129,543,175...129,551,467
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H1-9P |
H1.9 linker histone, pseudogene |
enables |
IBA |
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GO_Central |
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GO_REF:0000033 |
NCBI chr17:50,171,428...50,172,476
Ensembl chr17:50,171,514...50,171,936
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H2AZ1 |
H2A.Z variant histone 1 |
enables |
IDA |
(PMID:19633671) |
UniProt |
PMID:19633671 |
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NCBI chr 4:99,948,088...99,950,275
Ensembl chr 4:99,948,086...99,950,355
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H3-3A |
H3.3 histone A |
enables |
IDA |
(PMID:19633671) |
UniProt |
PMID:19633671 |
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NCBI chr 1:226,061,831...226,072,019
Ensembl chr 1:226,061,851...226,072,019
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H3-3B |
H3.3 histone B |
enables |
IDA |
(PMID:19633671) |
UniProt |
PMID:19633671 |
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NCBI chr17:75,776,434...75,779,779
Ensembl chr17:75,776,434...75,785,893
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H3-5 |
H3.5 histone |
enables |
IDA |
(PMID:21274551) |
UniProt |
PMID:21274551 |
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NCBI chr12:31,791,185...31,792,298
Ensembl chr12:31,791,185...31,792,298
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H3Y1 |
H3.Y histone 1 |
enables |
IDA |
(PMID:27016736) |
UniProt |
PMID:27016736 |
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NCBI chr 5:17,654,868...17,655,849
Ensembl chr 5:17,654,868...17,655,849
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HDAC1 |
histone deacetylase 1 |
contributes_to |
HDA |
(PMID:16217013) |
UniProt |
PMID:16217013 |
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NCBI chr 1:32,292,083...32,333,626
Ensembl chr 1:32,292,083...32,333,635
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HDAC2 |
histone deacetylase 2 |
contributes_to |
HDA |
(PMID:16217013) |
UniProt |
PMID:16217013 |
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NCBI chr 6:113,933,028...113,971,148
Ensembl chr 6:113,933,028...114,011,308
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HMGA2 |
high mobility group AT-hook 2 |
enables |
IDA |
(PMID:17078040) |
UniProt |
PMID:17078040 |
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NCBI chr12:65,824,460...65,966,291
Ensembl chr12:65,824,460...65,966,291
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HMGN1 |
high mobility group nucleosome binding domain 1 |
enables |
IEA |
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InterPro |
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GO_REF:0000002 |
NCBI chr21:39,342,315...39,349,088
Ensembl chr21:39,342,315...39,349,647
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HMGN2 |
high mobility group nucleosomal binding domain 2 |
enables |
IEA |
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InterPro |
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GO_REF:0000002 |
NCBI chr 1:26,472,440...26,476,642
Ensembl chr 1:26,472,440...26,478,209
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HMGN3 |
high mobility group nucleosomal binding domain 3 |
enables |
IEA |
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InterPro |
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GO_REF:0000002 |
NCBI chr 6:79,201,245...79,234,682
Ensembl chr 6:79,201,245...79,234,689
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HMGN4 |
high mobility group nucleosomal binding domain 4 |
enables |
IEA |
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InterPro |
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GO_REF:0000002 |
NCBI chr 6:26,538,366...26,546,933
Ensembl chr 6:26,538,366...26,546,933
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HMGN5 |
high mobility group nucleosome binding domain 5 |
enables |
IEA |
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InterPro |
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GO_REF:0000002 |
NCBI chr X:81,113,699...81,201,913
Ensembl chr X:81,113,699...81,201,913
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HNRNPC |
heterogeneous nuclear ribonucleoprotein C |
enables |
HDA |
(PMID:16217013) |
UniProt |
PMID:16217013 |
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NCBI chr14:21,209,147...21,269,442
Ensembl chr14:21,209,136...21,269,494
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MACROH2A1 |
macroH2A.1 histone |
enables |
ISS IDA IEA |
(PMID:20008927) |
UniProt Ensembl |
PMID:20008927 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr 5:135,334,381...135,399,887
Ensembl chr 5:135,334,381...135,399,914
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MBD2 |
methyl-CpG binding domain protein 2 |
contributes_to |
HDA |
(PMID:16217013) |
UniProt |
PMID:16217013 |
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NCBI chr18:54,151,606...54,224,669
Ensembl chr18:54,151,606...54,224,669
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MBD3 |
methyl-CpG binding domain protein 3 |
contributes_to |
HDA |
(PMID:16217013) |
UniProt |
PMID:16217013 |
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NCBI chr19:1,573,596...1,592,865
Ensembl chr19:1,573,596...1,592,865
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MTA2 |
metastasis associated 1 family member 2 |
contributes_to |
HDA |
(PMID:16217013) |
UniProt |
PMID:16217013 |
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NCBI chr11:62,593,214...62,601,865
Ensembl chr11:62,593,214...62,601,865
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RBBP4 |
RB binding protein 4, chromatin remodeling factor |
contributes_to |
HDA |
(PMID:16217013) |
UniProt |
PMID:16217013 |
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NCBI chr 1:32,651,208...32,686,211
Ensembl chr 1:32,651,142...32,686,211
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RCC1 |
regulator of chromosome condensation 1 |
enables |
IDA |
(PMID:17435751) |
UniProt |
PMID:17435751 |
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NCBI chr 1:28,506,043...28,538,989
Ensembl chr 1:28,505,943...28,539,300
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SMARCA4 |
SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 |
contributes_to |
HDA |
(PMID:16217013) |
UniProt |
PMID:16217013 |
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NCBI chr19:10,961,030...11,062,273
Ensembl chr19:10,960,932...11,079,426
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SMARCB1 |
SWI/SNF related BAF chromatin remodeling complex subunit B1 |
contributes_to |
HDA |
(PMID:16217013) |
UniProt |
PMID:16217013 |
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NCBI chr22:23,786,966...23,838,009
Ensembl chr22:23,786,931...23,838,009
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SMARCC1 |
SWI/SNF related BAF chromatin remodeling complex subunit C1 |
contributes_to |
HDA |
(PMID:16217013) |
UniProt |
PMID:16217013 |
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NCBI chr 3:47,585,269...47,781,893
Ensembl chr 3:47,585,269...47,782,106
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SMARCC2 |
SWI/SNF related BAF chromatin remodeling complex subunit C2 |
contributes_to |
HDA |
(PMID:16217013) |
UniProt |
PMID:16217013 |
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NCBI chr12:56,162,359...56,189,483
Ensembl chr12:56,162,359...56,189,567
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SMARCD2 |
SWI/SNF related BAF chromatin remodeling complex subunit D2 |
contributes_to |
HDA |
(PMID:16217013) |
UniProt |
PMID:16217013 |
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NCBI chr17:63,832,081...63,842,685
Ensembl chr17:63,832,081...63,843,065
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SMARCE1 |
SWI/SNF related BAF chromatin remodeling complex subunit E1 |
contributes_to |
HDA |
(PMID:16217013) |
UniProt |
PMID:16217013 |
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NCBI chr17:40,624,962...40,647,818
Ensembl chr17:40,624,962...40,648,654
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VRK1 |
VRK serine/threonine kinase 1 |
enables |
IDA |
(PMID:35390161) |
UniProt |
PMID:35390161 |
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NCBI chr14:96,797,382...96,881,609
Ensembl chr14:96,797,304...96,954,846
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Term paths to the root
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