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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleosomal DNA binding
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Accession:GO:0031492 term browser browse the term
Definition:Binding to the DNA portion of a nucleosome.



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nucleosomal DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTB actin beta contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr 7:5,527,148...5,530,601
Ensembl chr 7:5,526,409...5,563,902
JBrowse link
G ACTL6A actin like 6A contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr 3:179,562,926...179,588,407
Ensembl chr 3:179,562,886...179,588,407
JBrowse link
G CHD4 chromodomain helicase DNA binding protein 4 contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr12:6,570,082...6,607,379
Ensembl chr12:6,570,082...6,614,524
JBrowse link
G GATAD2B GATA zinc finger domain containing 2B contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr 1:153,804,725...153,922,972
Ensembl chr 1:153,789,030...153,923,360
JBrowse link
G H1-0 H1.0 linker histone enables IBA GO_Central GO_REF:0000033 NCBI chr22:37,805,229...37,807,432
Ensembl chr22:37,805,229...37,807,432
JBrowse link
G H1-1 H1.1 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr 6:26,017,032...26,017,787
Ensembl chr 6:26,017,032...26,017,787
JBrowse link
G H1-10 H1.10 linker histone enables IBA GO_Central GO_REF:0000033 NCBI chr 3:129,314,771...129,316,286
Ensembl chr 3:129,314,771...129,316,286
JBrowse link
G H1-2 H1.2 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr 6:26,055,740...26,056,470
Ensembl chr 6:26,054,760...26,056,470
JBrowse link
G H1-3 H1.3 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr 6:26,234,212...26,234,987
Ensembl chr 6:26,234,212...26,234,987
JBrowse link
G H1-4 H1.4 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr 6:26,156,329...26,157,115
Ensembl chr 6:26,156,329...26,157,115
JBrowse link
G H1-5 H1.5 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr 6:27,866,792...27,867,588
Ensembl chr 6:27,866,792...27,867,588
JBrowse link
G H1-6 H1.6 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr 6:26,107,412...26,108,135
Ensembl chr 6:26,107,412...26,108,135
JBrowse link
G H1-7 H1.7 linker histone enables IBA GO_Central GO_REF:0000033 NCBI chr12:48,328,980...48,330,279
Ensembl chr12:48,328,980...48,330,279
JBrowse link
G H1-8 H1.8 linker histone enables ISS
IBA
CAFA
GO_Central
GO_REF:0000024 GO_REF:0000033 NCBI chr 3:129,543,175...129,551,467
Ensembl chr 3:129,543,175...129,551,467
JBrowse link
G H1-9P H1.9 linker histone, pseudogene enables IBA GO_Central GO_REF:0000033 NCBI chr17:50,171,428...50,172,476
Ensembl chr17:50,171,514...50,171,936
JBrowse link
G H2AZ1 H2A.Z variant histone 1 enables IDA (PMID:19633671) UniProt PMID:19633671 NCBI chr 4:99,948,088...99,950,275
Ensembl chr 4:99,948,086...99,950,355
JBrowse link
G H3-3A H3.3 histone A enables IDA (PMID:19633671) UniProt PMID:19633671 NCBI chr 1:226,061,831...226,072,019
Ensembl chr 1:226,061,851...226,072,019
JBrowse link
G H3-3B H3.3 histone B enables IDA (PMID:19633671) UniProt PMID:19633671 NCBI chr17:75,776,434...75,779,779
Ensembl chr17:75,776,434...75,785,893
JBrowse link
G H3-5 H3.5 histone enables IDA (PMID:21274551) UniProt PMID:21274551 NCBI chr12:31,791,185...31,792,298
Ensembl chr12:31,791,185...31,792,298
JBrowse link
G H3Y1 H3.Y histone 1 enables IDA (PMID:27016736) UniProt PMID:27016736 NCBI chr 5:17,654,868...17,655,849
Ensembl chr 5:17,654,868...17,655,849
JBrowse link
G HDAC1 histone deacetylase 1 contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr 1:32,292,083...32,333,626
Ensembl chr 1:32,292,083...32,333,635
JBrowse link
G HDAC2 histone deacetylase 2 contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr 6:113,933,028...113,971,148
Ensembl chr 6:113,933,028...114,011,308
JBrowse link
G HMGA2 high mobility group AT-hook 2 enables IDA (PMID:17078040) UniProt PMID:17078040 NCBI chr12:65,824,460...65,966,291
Ensembl chr12:65,824,460...65,966,291
JBrowse link
G HMGN1 high mobility group nucleosome binding domain 1 enables IEA InterPro GO_REF:0000002 NCBI chr21:39,342,315...39,349,088
Ensembl chr21:39,342,315...39,349,647
JBrowse link
G HMGN2 high mobility group nucleosomal binding domain 2 enables IEA InterPro GO_REF:0000002 NCBI chr 1:26,472,440...26,476,642
Ensembl chr 1:26,472,440...26,478,209
JBrowse link
G HMGN3 high mobility group nucleosomal binding domain 3 enables IEA InterPro GO_REF:0000002 NCBI chr 6:79,201,245...79,234,682
Ensembl chr 6:79,201,245...79,234,689
JBrowse link
G HMGN4 high mobility group nucleosomal binding domain 4 enables IEA InterPro GO_REF:0000002 NCBI chr 6:26,538,366...26,546,933
Ensembl chr 6:26,538,366...26,546,933
JBrowse link
G HMGN5 high mobility group nucleosome binding domain 5 enables IEA InterPro GO_REF:0000002 NCBI chr  X:81,113,699...81,201,913
Ensembl chr  X:81,113,699...81,201,913
JBrowse link
G HNRNPC heterogeneous nuclear ribonucleoprotein C enables HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr14:21,209,147...21,269,442
Ensembl chr14:21,209,136...21,269,494
JBrowse link
G MACROH2A1 macroH2A.1 histone enables ISS
IDA
IEA
(PMID:20008927) UniProt
Ensembl
PMID:20008927 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:135,334,381...135,399,887
Ensembl chr 5:135,334,381...135,399,914
JBrowse link
G MBD2 methyl-CpG binding domain protein 2 contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr18:54,151,606...54,224,669
Ensembl chr18:54,151,606...54,224,669
JBrowse link
G MBD3 methyl-CpG binding domain protein 3 contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr19:1,573,596...1,592,865
Ensembl chr19:1,573,596...1,592,865
JBrowse link
G MTA2 metastasis associated 1 family member 2 contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr11:62,593,214...62,601,865
Ensembl chr11:62,593,214...62,601,865
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr 1:32,651,208...32,686,211
Ensembl chr 1:32,651,142...32,686,211
JBrowse link
G RCC1 regulator of chromosome condensation 1 enables IDA (PMID:17435751) UniProt PMID:17435751 NCBI chr 1:28,506,043...28,538,989
Ensembl chr 1:28,505,943...28,539,300
JBrowse link
G SMARCA4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr19:10,961,030...11,062,273
Ensembl chr19:10,960,932...11,079,426
JBrowse link
G SMARCB1 SWI/SNF related BAF chromatin remodeling complex subunit B1 contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr22:23,786,966...23,838,009
Ensembl chr22:23,786,931...23,838,009
JBrowse link
G SMARCC1 SWI/SNF related BAF chromatin remodeling complex subunit C1 contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr 3:47,585,269...47,781,893
Ensembl chr 3:47,585,269...47,782,106
JBrowse link
G SMARCC2 SWI/SNF related BAF chromatin remodeling complex subunit C2 contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr12:56,162,359...56,189,483
Ensembl chr12:56,162,359...56,189,567
JBrowse link
G SMARCD2 SWI/SNF related BAF chromatin remodeling complex subunit D2 contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr17:63,832,081...63,842,685
Ensembl chr17:63,832,081...63,843,065
JBrowse link
G SMARCE1 SWI/SNF related BAF chromatin remodeling complex subunit E1 contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr17:40,624,962...40,647,818
Ensembl chr17:40,624,962...40,648,654
JBrowse link
G VRK1 VRK serine/threonine kinase 1 enables IDA (PMID:35390161) UniProt PMID:35390161 NCBI chr14:96,797,382...96,881,609
Ensembl chr14:96,797,304...96,954,846
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 19683
    binding 18137
      chromatin binding 726
        chromatin DNA binding 137
          nucleosomal DNA binding 42
Path 2
Term Annotations click to browse term
  molecular_function 19683
    binding 18137
      nucleic acid binding 4719
        DNA binding 2656
          chromatin DNA binding 137
            nucleosomal DNA binding 42
paths to the root