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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleosomal DNA binding
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Accession:GO:0031492 term browser browse the term
Definition:Binding to the DNA portion of a nucleosome.



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nucleosomal DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHDDS dehydrodolichyl diphosphate synthase subunit enables IEA InterPro GO_REF:0000002 NCBI chr 2:73,583,927...73,611,321
Ensembl chr 2:73,579,042...73,610,696
JBrowse link
G H1-0 H1.0 linker histone enables IBA GO_Central GO_REF:0000033 NCBI chr10:26,827,748...26,829,909
Ensembl chr10:26,829,089...26,829,673
JBrowse link
G H1-3 H1.3 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr35:24,155,864...24,156,647 JBrowse link
G H1-4 H1.4 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr35:24,091,950...24,092,694 JBrowse link
G H1-5 H1.5 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr35:25,045,883...25,046,775
Ensembl chr35:25,046,023...25,046,703
JBrowse link
G H1-7 enables IBA GO_Central GO_REF:0000033
G H1-8 H1.8 linker histone enables ISO (PMID:22868987) UniProt PMID:22868987 NCBI chr20:5,614,822...5,619,136
Ensembl chr20:5,617,001...5,624,352
JBrowse link
G H1-9 enables IBA GO_Central GO_REF:0000033
G H2AZ1 H2A.Z variant histone 1 enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chr32:21,889,890...21,892,165
Ensembl chr32:21,889,877...21,892,102
JBrowse link
G H2BC25 H2B clustered histone 25 enables IBA GO_Central GO_REF:0000033 NCBI chr35:24,144,778...24,155,922 JBrowse link
G H3-3A H3.3 histone A enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chr 7:38,797,168...38,805,417
Ensembl chr 7:38,797,448...38,805,416
JBrowse link
G HMGA2 high mobility group AT-hook 2 enables IEA Ensembl GO_REF:0000107 NCBI chr10:8,348,101...8,491,435 JBrowse link
G HMGN1 high mobility group nucleosome binding domain 1 enables IEA InterPro GO_REF:0000002 NCBI chr31:34,275,400...34,283,373
Ensembl chr31:34,275,839...34,282,340
JBrowse link
G HMGN2 high mobility group nucleosomal binding domain 2 enables IEA InterPro GO_REF:0000002 NCBI chr 2:73,579,042...73,582,786
Ensembl chr 2:73,579,042...73,610,696
JBrowse link
G HMGN3 high mobility group nucleosomal binding domain 3 enables IEA InterPro GO_REF:0000002 NCBI chr12:40,135,984...40,168,281
Ensembl chr12:40,135,988...40,168,266
JBrowse link
G HMGN4 high mobility group nucleosomal binding domain 4 enables IEA InterPro GO_REF:0000002 NCBI chr35:24,302,520...24,310,674
Ensembl chr35:24,304,716...24,309,841
JBrowse link
G LOC100685245 non-histone chromosomal protein HMG-14-like enables IEA InterPro GO_REF:0000002 NCBI chr11:1,364,693...1,366,497 JBrowse link
G LOC100688605 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002 NCBI chr 7:9,991,689...9,992,445 JBrowse link
G LOC100688901 high mobility group nucleosomal binding domain 2 pseudogene enables IEA InterPro GO_REF:0000002 NCBI chr36:3,185,192...3,185,482 JBrowse link
G LOC100856135 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002 NCBI chr37:10,830,795...10,831,276 JBrowse link
G LOC100856313 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002 NCBI chr 6:14,963,265...14,963,732 JBrowse link
G LOC119870795 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002
G LOC119871538 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002
G LOC119876617 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002
G LOC610839 high mobility group nucleosomal binding domain 2 pseudogene enables IEA InterPro GO_REF:0000002 NCBI chr12:30,973,316...30,973,712 JBrowse link
G LOC612779 histone H3.3A-like enables ISO (PMID:21274551) UniProt PMID:21274551 NCBI chr 1:19,127,678...19,128,230 JBrowse link
G MACROH2A1 macroH2A.1 histone enables IEA Ensembl GO_REF:0000107 NCBI chr11:23,369,957...23,448,235
Ensembl chr11:23,370,300...23,438,219
JBrowse link
G RCC1 regulator of chromosome condensation 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:71,948,159...71,972,902
Ensembl chr 2:71,948,165...71,964,353
JBrowse link
G VRK1 VRK serine/threonine kinase 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 8:65,444,404...65,551,348
Ensembl chr 8:65,443,949...65,551,151
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 21950
    binding 19826
      chromatin binding 691
        chromatin DNA binding 137
          nucleosomal DNA binding 29
Path 2
Term Annotations click to browse term
  molecular_function 21950
    binding 19826
      nucleic acid binding 6710
        DNA binding 2233
          chromatin DNA binding 137
            nucleosomal DNA binding 29
paths to the root