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ONTOLOGY REPORT - ANNOTATIONS

Term:nucleosomal DNA binding
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Accession:GO:0031492 term browser browse the term
Definition:Binding to the DNA portion of a nucleosome.


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nucleosomal DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H1-2 H1.2 linker histone, cluster member enables IEA TreeGrafter GO_REF:0000118 NCBI chr 6:25,891,079...25,891,859
Ensembl chr 6:26,549,016...26,549,657 		JBrowse link
G HMGA2 high mobility group AT-hook 2 enables ISO (PMID:17078040) UniProt PMID:17078040 NCBI chr12:22,954,946...23,096,623 JBrowse link
G HMGN1 high mobility group nucleosome binding domain 1 enables IEA InterPro GO_REF:0000002 NCBI chr21:25,695,582...25,702,689 JBrowse link
G HMGN2 high mobility group nucleosomal binding domain 2 enables IEA InterPro GO_REF:0000002 NCBI chr 1:25,736,429...25,739,987
Ensembl chr 1:26,801,607...26,804,333 		JBrowse link
G LOC100970414 histone H3.3A enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chr 1:201,523,670...201,533,005
Ensembl chr 1:206,520,109...206,529,447 		JBrowse link
G LOC100970460 histone H1.0 enables IEA TreeGrafter GO_REF:0000118 NCBI chr22:18,720,235...18,722,440
Ensembl chr22:36,551,693...36,552,277 		JBrowse link
G LOC100973117 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002 NCBI chr14:61,385,822...61,386,094 JBrowse link
G LOC100974858 core histone macro-H2A.1 enables IEA Ensembl GO_REF:0000107 NCBI chr 5:130,727,065...130,791,932
Ensembl chr 5:136,868,521...136,933,834 		JBrowse link
G LOC100974973 histone H2A.Z enables IEA Ensembl GO_REF:0000107 NCBI chr 4:92,371,150...92,373,454
Ensembl chr 4:103,030,469...103,033,397 		JBrowse link
G LOC100976209 histone H3.3A enables ISO (PMID:21274551) UniProt PMID:21274551 NCBI chr12:54,444,002...54,444,656 JBrowse link
G LOC100988671 histone H3.3A enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chr17:69,728,165...69,730,519
Ensembl chr17:75,277,614...75,281,106 		JBrowse link
G LOC100990894 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002 NCBI chr14:6,028,567...6,029,689 JBrowse link
G LOC100993446 histone H1.8 enables ISO (PMID:22868987) UniProt PMID:22868987 NCBI chr 3:126,600,616...126,609,319
Ensembl chr 3:133,952,981...133,961,243 		JBrowse link
G LOC106633835 non-histone chromosomal protein HMG-14-like enables IEA InterPro GO_REF:0000002 NCBI chr15:41,308,640...41,309,156 JBrowse link
G LOC106635490 non-histone chromosomal protein HMG-14-like enables IEA InterPro GO_REF:0000002 NCBI chr14:49,473,277...49,476,423 JBrowse link
G RCC1 regulator of chromosome condensation 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:27,784,488...27,806,728
Ensembl chr 1:28,820,815...28,841,773 		JBrowse link
G SMARCE1 SWI/SNF related BAF chromatin remodeling complex subunit E1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr17:16,633,982...16,660,502
Ensembl chr17:16,860,400...16,884,946 		JBrowse link
G VRK1 VRK serine/threonine kinase 1 enables IEA Ensembl GO_REF:0000107 NCBI chr14:77,429,970...77,514,217
Ensembl chr14:96,756,397...96,831,954 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 19165
    binding 17466
      chromatin binding 644
        chromatin DNA binding 110
          nucleosomal DNA binding 18
Path 2
Term Annotations click to browse term
  molecular_function 19165
    binding 17466
      nucleic acid binding 4515
        DNA binding 2196
          chromatin DNA binding 110
            nucleosomal DNA binding 18
paths to the root