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ONTOLOGY REPORT - ANNOTATIONS

Term:nucleosomal DNA binding
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Accession:GO:0031492 term browser browse the term
Definition:Binding to the DNA portion of a nucleosome.


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nucleosomal DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07053402.1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:99,990,743...99,991,003 JBrowse link
G AABR07053884.1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:126,570,653...126,570,904 JBrowse link
G ENSRNOG00000064141 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr15:7,467,152...7,470,303 JBrowse link
G ENSRNOG00000064384 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 8:6,857,829...6,858,796 JBrowse link
G ENSRNOG00000068549 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr15:74,620,797...74,621,228 JBrowse link
G H1f0 H1.0 linker histone enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:110,592,834...110,594,694
Ensembl chr 7:110,592,208...110,594,694 		JBrowse link
G H1f1 H1.1 linker histone, cluster member enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,366,268...41,367,011
Ensembl chr17:41,366,268...41,367,011 		JBrowse link
G H1f10 H1.10 linker histone enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:120,440,515...120,441,578
Ensembl chr 4:120,440,870...120,441,448 		JBrowse link
G H1f2 H1.2 linker histone, cluster member enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,391,106...41,392,597
Ensembl chr17:41,388,477...41,392,635 		JBrowse link
G H1f4 H1.4 linker histone, cluster member enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,486,574...41,487,355
Ensembl chr17:41,486,560...41,487,403 		JBrowse link
G H1f5 H1.5 linker histone, cluster member enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:42,726,132...42,727,162
Ensembl chr17:42,726,127...42,769,160 		JBrowse link
G H1f6 H1.6 linker histone, cluster member enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,427,365...41,428,109
Ensembl chr17:41,427,323...41,428,119 		JBrowse link
G H1f7 H1.7 linker histone enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:129,408,521...129,409,888
Ensembl chr 7:129,408,359...129,409,930 		JBrowse link
G H1f8 H1.8 linker histone enables ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:22868987)		 CAFA
GO_Central
RGD		 PMID:22868987 GO_REF:0000024 GO_REF:0000033 NCBI chr 4:148,993,133...148,998,254
Ensembl chr 4:148,993,133...148,998,254 		JBrowse link
G H2az1 H2A.Z variant histone 1 enables ISO (PMID:19633671) RGD PMID:19633671 NCBI chr 2:226,355,668...226,357,984
Ensembl chr 2:226,355,708...226,358,485 		JBrowse link
G H3cl H3 clustered histone like enables ISO (PMID:27016736) RGD PMID:27016736 NCBI chr17:41,372,194...41,378,877 JBrowse link
G H3f3a H3.3 histone A enables ISO (PMID:19633671) RGD PMID:19633671 NCBI chr13:92,533,289...92,544,902
Ensembl chr13:92,533,298...92,544,908 		JBrowse link
G H3f3b H3.3 histone B enables ISO (PMID:19633671) RGD PMID:19633671 NCBI chr10:101,256,484...101,258,716
Ensembl chr10:101,256,480...101,258,709
Ensembl chr13:101,256,480...101,258,709 		JBrowse link
G H4f3 H1.3 linker histone, cluster member enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,551,524...41,552,303
Ensembl chr17:41,529,667...41,552,334 		JBrowse link
G Hils1 histone linker H1 domain, spermatid-specific 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:79,913,525...79,914,321
Ensembl chr10:79,913,480...79,914,321 		JBrowse link
G Hmga2 high mobility group AT-hook 2 enables ISO
ISS		 (PMID:17078040)
GO_REF:0000024		 RGD
UniProt		 PMID:17078040 GO_REF:0000024 NCBI chr 7:55,877,145...55,998,813
Ensembl chr 7:55,880,112...55,994,784 		JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:35,422,328...35,428,247
Ensembl chr11:35,422,328...35,428,254 		JBrowse link
G Hmgn1-ps6 high mobility group nucleosome binding domain 1, pseudogene 6 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr14:60,030,310...60,030,603
Ensembl chr14:60,030,448...60,030,603
Ensembl chr14:60,030,448...60,030,603 		JBrowse link
G Hmgn1l1 high mobility group nucleosomal binding domain 1 like 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:38,604,856...38,606,026
Ensembl chr 4:38,605,721...38,606,011 		JBrowse link
G Hmgn2 high mobility group nucleosomal binding domain 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:146,192,126...146,195,580
Ensembl chr 5:146,192,126...146,195,521
Ensembl chr16:146,192,126...146,195,521 		JBrowse link
G Hmgn2-ps3 high mobility group nucleosomal binding domain 2, pseudogene 3 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:99,990,743...99,991,003
Ensembl chr 3:99,990,743...99,991,003 		JBrowse link
G Hmgn2-ps4 high mobility group nucleosomal binding domain 2, pseudogene 4 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:30,633,287...30,634,512
Ensembl chr16:30,622,845...30,634,512 		JBrowse link
G Hmgn2l2 high mobility group nucleosomal binding domain 2 like 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:57,618,690...57,618,983
Ensembl chr 2:57,618,690...57,618,953 		JBrowse link
G Hmgn2l3 high mobility group nucleosomal binding domain 2 like 3 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:83,520,046...83,520,312
Ensembl chr 7:83,520,046...83,520,312 		JBrowse link
G Hmgn3 high mobility group nucleosomal binding domain 3 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:84,022,493...84,059,329
Ensembl chr 8:84,022,495...84,062,976 		JBrowse link
G Hmgn5 high mobility group nucleosome binding domain 5 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:74,085,871...74,094,488
Ensembl chr  X:74,085,875...74,094,441
Ensembl chr 1:74,085,875...74,094,441 		JBrowse link
G Hmgn5b high mobility group nucleosome binding domain 5B enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:117,222,188...117,224,158
Ensembl chr 1:117,222,298...117,223,587
Ensembl chr  X:117,222,298...117,223,587 		JBrowse link
G LOC120093100 non-histone chromosomal protein HMG-14-like enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:44,016,858...44,017,148
Ensembl chr18:44,016,845...44,017,133 		JBrowse link
G LOC120093784 non-histone chromosomal protein HMG-14-like enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:15,148,859...15,151,046 JBrowse link
G Macroh2a1 macroH2A.1 histone enables ISO (PMID:20008927)
(PMID:18936163)		 RGD PMID:18936163 PMID:20008927 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072 		JBrowse link
G Rcc1 regulator of chromosome condensation 1 enables ISO (PMID:17435751) RGD PMID:17435751 NCBI chr 5:144,526,025...144,544,445
Ensembl chr 5:144,526,025...144,544,577 		JBrowse link
G Vrk1 VRK serine/threonine kinase 1 enables ISO (PMID:35390161) RGD PMID:35390161 NCBI chr 6:124,914,770...124,981,508
Ensembl chr 6:124,914,855...124,981,436 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 21086
    binding 18096
      chromatin binding 691
        chromatin DNA binding 133
          nucleosomal DNA binding 37
Path 2
Term Annotations click to browse term
  molecular_function 21086
    binding 18096
      nucleic acid binding 3967
        DNA binding 2329
          chromatin DNA binding 133
            nucleosomal DNA binding 37
paths to the root