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ONTOLOGY REPORT - ANNOTATIONS

Term:nucleosome binding
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Accession:GO:0031491 term browser browse the term
Definition:Binding to a nucleosome, a complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.

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nucleosome binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A contributes_to
enables		 ISO
IEA		 (PMID:23129809) MGI
TreeGrafter		 PMID:23129809 GO_REF:0000118 NCBI chrNW_004936474:11,148,857...11,197,312 JBrowse link
G Arid1b AT-rich interaction domain 1B enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936489:8,811,094...9,202,423
Ensembl chrNW_004936489:9,087,697...9,205,203 		JBrowse link
G Cabin1 calcineurin binding protein 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936619:890,474...1,030,914
Ensembl chrNW_004936619:890,299...1,030,899 		JBrowse link
G Cgas cyclic GMP-AMP synthase enables ISO (PMID:32911480), (PMID:32911481), (PMID:32913000)
(PMID:32911482), (PMID:32912999), (PMID:33051594)		 UniProt PMID:32911480 PMID:32911481 PMID:32911482 PMID:32912999 PMID:32913000 More... NCBI chrNW_004936859:797,469...807,036 JBrowse link
G Chd1l chromodomain helicase DNA binding protein 1 like enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004937024:164,309...216,967
Ensembl chrNW_004937024:164,327...216,851 		JBrowse link
G Dnttip1 deoxynucleotidyltransferase terminal interacting protein 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936514:7,209,091...7,231,996
Ensembl chrNW_004936514:7,207,441...7,232,256 		JBrowse link
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:17,430,383...17,465,889
Ensembl chrNW_004936490:17,428,677...17,465,877 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936527:5,024,077...5,069,152
Ensembl chrNW_004936527:5,024,068...5,063,939 		JBrowse link
G Glyr1 glyoxylate reductase 1 homolog enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936530:4,761,838...4,794,191
Ensembl chrNW_004936530:4,761,823...4,794,729 		JBrowse link
G Hp1bp3 heterochromatin protein 1 binding protein 3 enables IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:6,665,989...6,699,722
Ensembl chrNW_004936474:6,665,507...6,700,152 		JBrowse link
G L3mbtl1 L3MBTL histone methyl-lysine binding protein 1 enables ISO (PMID:17540172) UniProt PMID:17540172 NCBI chrNW_004936530:3,038,873...3,069,724
Ensembl chrNW_004936530:3,038,847...3,069,494 		JBrowse link
G LOC101957075 protein HIRA enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936619:3,282,170...3,380,151
Ensembl chrNW_004936619:3,282,173...3,380,151 		JBrowse link
G LOC101970440 histone H1.0 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:3,314,991...3,315,974
Ensembl chrNW_004936492:3,315,048...3,315,632 		JBrowse link
G Mllt10 MLLT10 histone lysine methyltransferase DOT1L cofactor enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936520:6,176,784...6,366,436
Ensembl chrNW_004936520:6,176,599...6,366,428 		JBrowse link
G Mllt6 MLLT6, PHD finger containing enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936490:14,113,317...14,135,710
Ensembl chrNW_004936490:14,113,346...14,131,942 		JBrowse link
G Nap1l4 nucleosome assembly protein 1 like 4 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936794:1,074,126...1,106,613
Ensembl chrNW_004936794:1,074,128...1,106,519 		JBrowse link
G Noc2l NOC2 like nucleolar associated transcriptional repressor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936737:2,087,123...2,098,153
Ensembl chrNW_004936737:2,087,158...2,098,156 		JBrowse link
G Parp1 poly(ADP-ribose) polymerase 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:3,102,468...3,147,601
Ensembl chrNW_004936526:3,102,039...3,147,642 		JBrowse link
G Parp2 poly(ADP-ribose) polymerase 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936877:554,969...564,905
Ensembl chrNW_004936877:554,473...564,903 		JBrowse link
G Pwwp3a PWWP domain containing 3A, DNA repair factor enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936588:692,436...709,899
Ensembl chrNW_004936588:692,436...709,945 		JBrowse link
G Rcc1 regulator of chromosome condensation 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:12,635,175...12,646,907
Ensembl chrNW_004936474:12,635,175...12,647,231 		JBrowse link
G Rnf168 ring finger protein 168 enables ISO (PMID:22742833) UniProt PMID:22742833 NCBI chrNW_004936784:1,073,236...1,094,575 JBrowse link
G Rnf169 ring finger protein 169 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936498:3,675,075...3,783,514
Ensembl chrNW_004936498:3,685,572...3,776,466 		JBrowse link
G Rnf4 ring finger protein 4 enables ISO PMID:11319220 UniProt PMID:11319220 RGD:8554033 NCBI chrNW_004936477:21,025,040...21,055,821 JBrowse link
G Sap30l SAP30 like enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936515:8,305,809...8,319,685
Ensembl chrNW_004936515:8,305,799...8,319,685 		JBrowse link
G Sirt6 sirtuin 6 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,387,162...2,394,066
Ensembl chrNW_004936588:2,386,977...2,394,096 		JBrowse link
G Smarca1 SNF2 related chromatin remodeling ATPase 1 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936479:2,030,788...2,110,501
Ensembl chrNW_004936479:2,030,716...2,110,661 		JBrowse link
G Smarca5 SNF2 related chromatin remodeling ATPase 5 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936535:4,857,816...4,890,266
Ensembl chrNW_004936535:4,856,672...4,890,225 		JBrowse link
G Ssrp1 structure specific recognition protein 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936581:5,148,108...5,157,630
Ensembl chrNW_004936581:5,148,050...5,157,667 		JBrowse link
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936880:511,699...545,364
Ensembl chrNW_004936880:508,244...545,369 		JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936538:4,878,645...4,910,613
Ensembl chrNW_004936538:4,878,662...4,910,597 		JBrowse link
nucleosomal DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmga2 high mobility group AT-hook 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:3,944,419...3,958,289
Ensembl chrNW_004936545:3,944,419...4,064,193 		JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936500:3,845,320...3,852,000
Ensembl chrNW_004936500:3,847,517...3,852,039 		JBrowse link
G Hmgn3 high mobility group nucleosomal binding domain 3 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936510:10,923,014...10,954,354
Ensembl chrNW_004936510:10,923,009...10,954,354 		JBrowse link
G Hmgn5 high mobility group nucleosome binding domain 5 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936547:2,607,491...2,614,037 JBrowse link
G LOC101955795 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936566:2,434,081...2,434,350 JBrowse link
G LOC101956023 uncharacterized LOC101956023 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936474:10,951,065...10,952,654
Ensembl chrNW_004936474:10,951,040...10,952,622 		JBrowse link
G LOC101956464 non-histone chromosomal protein HMG-17 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936542:8,395,521...8,395,897 JBrowse link
G LOC101956825 non-histone chromosomal protein HMG-17 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936487:9,155,533...9,156,763 JBrowse link
G LOC101958619 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936471:36,589,205...36,589,581 JBrowse link
G LOC101963041 histone H3.3A enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chrNW_004936526:2,835,002...2,842,328 JBrowse link
G LOC101963257 histone H3.3A enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chrNW_004936594:959,493...961,703
Ensembl chrNW_004936594:958,049...961,708 		JBrowse link
G LOC101965662 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936626:2,238,897...2,240,015 JBrowse link
G LOC101966029 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936523:2,611,759...2,612,147 JBrowse link
G LOC101966642 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936622:837,413...838,563 JBrowse link
G LOC101970440 histone H1.0 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936492:3,314,991...3,315,974
Ensembl chrNW_004936492:3,315,048...3,315,632 		JBrowse link
G LOC101971055 histone H1.8 enables ISO (PMID:22868987) UniProt PMID:22868987 NCBI chrNW_004936602:885,478...890,014 JBrowse link
G LOC101971629 core histone macro-H2A.1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936597:2,496,489...2,556,352
Ensembl chrNW_004936597:2,495,862...2,556,603 		JBrowse link
G LOC101974663 histone H2A.Z enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chrNW_004936520:3,059,623...3,061,941 JBrowse link
G Rcc1 regulator of chromosome condensation 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:12,635,175...12,646,907
Ensembl chrNW_004936474:12,635,175...12,647,231 		JBrowse link
G Smarce1 SWI/SNF related BAF chromatin remodeling complex subunit E1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936490:15,638,546...15,659,372
Ensembl chrNW_004936490:15,638,526...15,659,706 		JBrowse link
G Vrk1 VRK serine/threonine kinase 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936604:1,011,048...1,097,388
Ensembl chrNW_004936604:1,011,052...1,097,403 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 18190
    binding 16301
      protein-containing complex binding 1478
        nucleosome binding 50
          CENP-A containing nucleosome binding 0
          nucleosomal DNA binding 21
paths to the root