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ONTOLOGY REPORT - ANNOTATIONS

Term:nucleosome binding
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Accession:GO:0031491 term browser browse the term
Definition:Binding to a nucleosome, a complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.


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nucleosome binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTR6 actin related protein 6 enables IBA GO_Central GO_REF:0000033 NCBI chr 5:83,909,415...83,929,076
Ensembl chr 5:83,908,884...83,929,045 		JBrowse link
G ARID1A AT-rich interaction domain 1A contributes_to IBA GO_Central GO_REF:0000033 NCBI chr 6:84,049,729...84,124,302
Ensembl chr 6:84,049,087...84,123,349 		JBrowse link
G ARID1B AT-rich interaction domain 1B contributes_to IBA GO_Central GO_REF:0000033 NCBI chr 1:9,791,627...10,227,381
Ensembl chr 1:9,791,633...10,227,502 		JBrowse link
G CABIN1 calcineurin binding protein 1 contributes_to IBA GO_Central GO_REF:0000033 NCBI chr14:49,686,196...49,787,723
Ensembl chr14:49,686,196...49,787,688 		JBrowse link
G CGAS cyclic GMP-AMP synthase enables ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:92,483,253...92,500,376
Ensembl chr 1:92,483,327...92,504,307 		JBrowse link
G CHD1L chromodomain helicase DNA binding protein 1 like enables IEA Ensembl GO_REF:0000107 NCBI chr 4:100,264,963...100,425,728
Ensembl chr 4:100,264,968...100,425,692 		JBrowse link
G DNTTIP1 deoxynucleotidyltransferase terminal interacting protein 1 enables IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr17:47,994,658...48,017,568
Ensembl chr17:47,994,656...48,017,560 		JBrowse link
G EED embryonic ectoderm development contributes_to IBA GO_Central GO_REF:0000033 NCBI chr 9:20,123,077...20,158,747
Ensembl chr 9:20,123,857...20,158,816 		JBrowse link
G EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit enables IEA Ensembl GO_REF:0000107 NCBI chr12:20,107,744...20,139,764
Ensembl chr12:20,115,297...20,141,749 		JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit enables IEA Ensembl GO_REF:0000107 NCBI chr 9:109,384,976...109,450,943
Ensembl chr 9:109,385,015...109,450,941 		JBrowse link
G GLYR1 glyoxylate reductase 1 homolog enables IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:37,555,357...37,593,492
Ensembl chr 3:37,555,394...37,593,559 		JBrowse link
G H1-0 H1.0 linker histone enables IEA Ensembl GO_REF:0000107 NCBI chr 5:10,038,944...10,041,242
Ensembl chr 5:10,038,966...10,041,067 		JBrowse link
G HIRA histone cell cycle regulator contributes_to IBA GO_Central GO_REF:0000033 NCBI chr14:51,029,117...51,102,409
Ensembl chr14:51,029,126...51,102,409 		JBrowse link
G HP1BP3 heterochromatin protein 1 binding protein 3 enables IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:78,975,551...79,007,921
Ensembl chr 6:78,975,555...79,007,889 		JBrowse link
G L3MBTL1 L3MBTL histone methyl-lysine binding protein 1 enables ISO (PMID:17540172) UniProt PMID:17540172 NCBI chr17:46,135,567...46,176,967
Ensembl chr17:46,136,013...46,173,944 		JBrowse link
G MLLT10 MLLT10 histone lysine methyltransferase DOT1L cofactor enables IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr10:53,072,056...53,315,351
Ensembl chr10:53,072,056...53,314,862 		JBrowse link
G MLLT6 MLLT6, PHD finger containing enables IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr12:23,380,190...23,404,853
Ensembl chr12:23,380,209...23,404,837 		JBrowse link
G NAP1L4 nucleosome assembly protein 1 like 4 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:2,070,140...2,117,503
Ensembl chr 2:2,070,142...2,117,615 		JBrowse link
G NOC2L NOC2 like nucleolar associated transcriptional repressor enables IEA Ensembl GO_REF:0000107 NCBI chr 6:63,307,703...63,320,799
Ensembl chr 6:63,307,695...63,335,201 		JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 enables IEA Ensembl GO_REF:0000107 NCBI chr10:14,203,157...14,241,164
Ensembl chr10:14,203,160...14,241,196 		JBrowse link
G PARP2 poly(ADP-ribose) polymerase 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 7:78,535,072...78,551,393
Ensembl chr 7:78,535,076...78,551,375 		JBrowse link
G PWWP3A PWWP domain containing 3A, DNA repair factor enables IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:77,089,915...77,111,236
Ensembl chr 2:77,089,917...77,111,205 		JBrowse link
G RCC1 regulator of chromosome condensation 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:85,540,766...85,565,869
Ensembl chr 6:85,546,024...85,565,866 		JBrowse link
G RNF168 ring finger protein 168 enables IBA GO_Central GO_REF:0000033 NCBI chr13:133,625,534...133,659,253 JBrowse link
G RNF169 ring finger protein 169 enables IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:9,069,776...9,177,367
Ensembl chr 9:9,069,617...9,173,915 		JBrowse link
G RNF4 ring finger protein 4 enables ISO PMID:11319220 UniProt PMID:11319220 RGD:8554033 NCBI chr 8:1,353,532...1,380,637
Ensembl chr 8:1,353,658...1,380,634 		JBrowse link
G SAP30L SAP30 like enables IEA Ensembl GO_REF:0000107 NCBI chr16:68,695,892...68,709,952
Ensembl chr16:68,695,900...68,709,742 		JBrowse link
G SIRT6 sirtuin 6 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:74,568,539...74,577,774
Ensembl chr 2:74,568,493...74,577,772 		JBrowse link
G SMARCA1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 enables IEA InterPro GO_REF:0000002 NCBI chr  X:106,039,961...106,116,156
Ensembl chr  X:106,039,969...106,116,139 		JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 enables IEA InterPro GO_REF:0000002 NCBI chr 8:84,184,572...84,224,943
Ensembl chr 8:84,184,576...84,224,871 		JBrowse link
G SSRP1 structure specific recognition protein 1 enables IBA GO_Central GO_REF:0000033 NCBI chr 2:13,619,666...13,629,233
Ensembl chr 2:13,619,716...13,629,227 		JBrowse link
G SUPT16H SPT16 homolog, facilitates chromatin remodeling subunit enables IBA GO_Central GO_REF:0000033 NCBI chr 7:77,780,968...77,814,519
Ensembl chr 7:77,781,316...77,814,505 		JBrowse link
G SUPT6H SPT6 homolog, histone chaperone and transcription elongation factor enables IBA GO_Central GO_REF:0000033 NCBI chr12:44,916,716...44,940,732
Ensembl chr12:44,917,633...44,940,273 		JBrowse link
G ZNHIT1 zinc finger HIT-type containing 1 enables IBA GO_Central GO_REF:0000033 NCBI chr 3:8,918,873...8,926,595
Ensembl chr 3:8,918,872...8,926,589 		JBrowse link
nucleosomal DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H1-0 H1.0 linker histone enables IBA GO_Central GO_REF:0000033 NCBI chr 5:10,038,944...10,041,242
Ensembl chr 5:10,038,966...10,041,067 		JBrowse link
G H1-6 H1.6 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr 7:20,774,135...20,777,244
Ensembl chr 7:20,775,859...20,776,497 		JBrowse link
G H1-7 H1.7 linker histone enables IBA GO_Central GO_REF:0000033 NCBI chr 5:78,699,291...78,700,227
Ensembl chr 5:78,698,577...78,700,109 		JBrowse link
G H1-8 H1.8 linker histone enables ISS
IBA		 CAFA
GO_Central		 GO_REF:0000024 GO_REF:0000033 NCBI chr13:68,921,491...68,943,061
Ensembl chr13:68,938,024...68,942,744 		JBrowse link
G H2AZ1 H2A.Z variant histone 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 8:120,563,752...120,566,023
Ensembl chr 8:120,563,752...120,566,177 		JBrowse link
G H3-3A H3.3 histone A enables IEA Ensembl GO_REF:0000107 NCBI chr10:13,939,938...13,947,976
Ensembl chr10:13,923,077...13,948,484 		JBrowse link
G H3-3B H3.3 histone B enables IEA Ensembl GO_REF:0000107 NCBI chr12:5,632,326...5,634,977
Ensembl chr12:5,632,365...5,634,726 		JBrowse link
G HMGA2 high mobility group AT-hook 2 enables ISO (PMID:17078040) UniProt PMID:17078040 NCBI chr 5:30,188,521...30,329,635 JBrowse link
G HMGN1 high mobility group nucleosome binding domain 1 enables IEA InterPro GO_REF:0000002 NCBI chr13:202,936,313...202,943,496
Ensembl chr13:202,905,233...202,943,575 		JBrowse link
G HMGN2 high mobility group nucleosomal binding domain 2 enables IEA InterPro GO_REF:0000002 NCBI chr 6:83,857,114...83,861,907
Ensembl chr 6:83,858,177...83,861,905 		JBrowse link
G HMGN3 high mobility group nucleosomal binding domain 3 enables IEA InterPro GO_REF:0000002 NCBI chr 1:86,954,468...86,987,465
Ensembl chr 1:86,954,465...86,987,460 		JBrowse link
G HMGN4 high mobility group nucleosomal binding domain 4 enables IEA InterPro GO_REF:0000002 NCBI chr 7:20,998,913...21,003,138
Ensembl chr 7:20,998,957...21,003,134 		JBrowse link
G HMGN5 high mobility group nucleosome binding domain 5 enables IEA InterPro GO_REF:0000002 NCBI chr  X:64,541,310...64,617,345 JBrowse link
G LOC100359361 high mobility group AT-hook 2-like enables ISS UniProt GO_REF:0000024 NCBI chr 1:191,094,785...191,105,394 JBrowse link
G MACROH2A1 macroH2A.1 histone enables IEA Ensembl GO_REF:0000107 NCBI chr 2:137,535,128...137,623,886
Ensembl chr 2:137,534,138...137,623,886 		JBrowse link
G RCC1 regulator of chromosome condensation 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:85,540,766...85,565,869
Ensembl chr 6:85,546,024...85,565,866 		JBrowse link
G VRK1 VRK serine/threonine kinase 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 7:117,942,929...118,025,991
Ensembl chr 7:117,942,973...118,028,923 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 19432
    binding 16980
      protein-containing complex binding 1558
        nucleosome binding 49
          CENP-A containing nucleosome binding 0
          nucleosomal DNA binding 17
paths to the root