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ONTOLOGY REPORT - ANNOTATIONS

Term:nucleosome binding
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Accession:GO:0031491 term browser browse the term
Definition:Binding to a nucleosome, a complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.

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nucleosome binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A contributes_to
enables		 ISO
IEA		 (PMID:23129809) MGI
TreeGrafter		 PMID:23129809 GO_REF:0000118 NCBI chrNW_004624764:10,672,673...10,759,634
Ensembl chrNW_004624764:10,672,735...10,759,634 		JBrowse link
G Arid1b AT-rich interaction domain 1B enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624785:970,169...1,417,847
Ensembl chrNW_004624785:973,003...1,417,853 		JBrowse link
G Cabin1 calcineurin binding protein 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:10,110,476...10,257,165
Ensembl chrNW_004624747:10,110,370...10,257,276 		JBrowse link
G Cgas cyclic GMP-AMP synthase enables ISO (PMID:32911482), (PMID:32912999), (PMID:33051594)
(PMID:32911480), (PMID:32911481), (PMID:32913000)		 UniProt PMID:32911480 PMID:32911481 PMID:32911482 PMID:32912999 PMID:32913000 More... NCBI chrNW_004624819:587,739...680,618
Ensembl chrNW_004624819:643,045...680,684 		JBrowse link
G Chd1l chromodomain helicase DNA binding protein 1 like enables ISO (PMID:33357431), (PMID:34210977), (PMID:34486521) UniProt PMID:33357431 PMID:34210977 PMID:34486521 NCBI chrNW_004624772:16,178,080...16,241,869
Ensembl chrNW_004624772:16,178,139...16,241,624 		JBrowse link
G Dnttip1 deoxynucleotidyltransferase terminal interacting protein 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624790:8,761,077...8,789,728
Ensembl chrNW_004624790:8,761,075...8,789,711 		JBrowse link
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit enables ISO (PMID:33514705) DisProt PMID:33514705 NCBI chrNW_004624795:1,454,361...1,470,079 JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit enables ISO (PMID:33479123) DisProt PMID:33479123 NCBI chrNW_004624800:6,781,848...6,874,221
Ensembl chrNW_004624800:6,802,901...6,874,196 		JBrowse link
G Glyr1 glyoxylate reductase 1 homolog enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624824:2,655,909...2,692,546
Ensembl chrNW_004624824:2,655,909...2,692,522 		JBrowse link
G Hp1bp3 heterochromatin protein 1 binding protein 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624764:5,760,002...5,794,705 JBrowse link
G L3mbtl1 L3MBTL histone methyl-lysine binding protein 1 enables ISO (PMID:17540172) UniProt PMID:17540172 NCBI chrNW_004624790:10,762,340...10,799,228
Ensembl chrNW_004624790:10,761,632...10,791,891 		JBrowse link
G LOC101713307 protein HIRA enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:9...95,643 JBrowse link
G LOC101717518 histone H1.0 enables ISO (PMID:35377618) DisProt PMID:35377618 NCBI chrNW_004624752:10,103,866...10,105,983 JBrowse link
G Mllt10 MLLT10 histone lysine methyltransferase DOT1L cofactor enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624796:6,762,304...6,949,126
Ensembl chrNW_004624796:6,762,118...6,948,816 		JBrowse link
G Mllt6 MLLT6, PHD finger containing enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624795:3,955,769...3,976,588
Ensembl chrNW_004624795:3,959,213...3,976,616 		JBrowse link
G Nap1l4 nucleosome assembly protein 1 like 4 enables ISO (PMID:9325046) UniProt PMID:9325046 NCBI chrNW_004624767:15,690,848...15,735,618
Ensembl chrNW_004624767:15,690,848...15,735,969 		JBrowse link
G Noc2l NOC2 like nucleolar associated transcriptional repressor enables ISO (PMID:16322561) UniProt PMID:16322561 NCBI chrNW_004624818:8,551,379...8,563,760
Ensembl chrNW_004624818:8,551,462...8,563,529 		JBrowse link
G Parp1 poly(ADP-ribose) polymerase 1 enables ISO (PMID:15607977), (PMID:31848352) UniProt PMID:15607977 PMID:31848352 NCBI chrNW_004624807:446,662...478,571
Ensembl chrNW_004624807:446,647...479,069 		JBrowse link
G Parp2 poly(ADP-ribose) polymerase 2 enables ISO (PMID:32939087) UniProt PMID:32939087 NCBI chrNW_004624825:4,312,243...4,326,058
Ensembl chrNW_004624825:4,313,217...4,325,968 		JBrowse link
G Pwwp3a PWWP domain containing 3A, DNA repair factor enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:7,309,629...7,334,165
Ensembl chrNW_004624828:7,309,119...7,334,176 		JBrowse link
G Rcc1 regulator of chromosome condensation 1 enables ISO (PMID:20347844) CAFA PMID:20347844 NCBI chrNW_004624764:12,316,976...12,360,673
Ensembl chrNW_004624764:12,326,738...12,362,213 		JBrowse link
G Rnf168 ring finger protein 168 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:61,592,967...61,627,585
Ensembl chrNW_004624730:61,591,943...61,627,170 		JBrowse link
G Rnf169 ring finger protein 169 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624817:2,272,874...2,371,168
Ensembl chrNW_004624817:2,277,222...2,371,105 		JBrowse link
G Rnf4 ring finger protein 4 enables ISO PMID:11319220 UniProt PMID:11319220 RGD:8554033 NCBI chrNW_004624755:25,139,637...25,163,586
Ensembl chrNW_004624755:25,141,567...25,153,942 		JBrowse link
G Sap30l SAP30 like enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:34,744,638...34,757,727
Ensembl chrNW_004624733:34,744,554...34,757,764 		JBrowse link
G Sirt6 sirtuin 6 enables ISO (PMID:23892288), (PMID:33067423)
(PMID:33067423)		 UniProt
DisProt		 PMID:23892288 PMID:33067423 NCBI chrNW_004624828:5,441,973...5,449,549
Ensembl chrNW_004624828:5,442,057...5,451,520 		JBrowse link
G Smarca1 SNF2 related chromatin remodeling ATPase 1 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624797:8,627,048...8,710,540
Ensembl chrNW_004624797:8,626,742...8,710,845 		JBrowse link
G Smarca5 SNF2 related chromatin remodeling ATPase 5 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624848:3,569,744...3,611,104 JBrowse link
G Ssrp1 structure specific recognition protein 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624864:3,253,639...3,262,105 JBrowse link
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624825:7,366,448...7,410,847
Ensembl chrNW_004624825:7,367,325...7,410,823 		JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624786:1,226,131...1,271,872
Ensembl chrNW_004624786:1,238,082...1,271,875 		JBrowse link
nucleosomal DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H1-1 H1.1 linker histone, cluster member enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624756:885,994...901,354
Ensembl chrNW_004624756:885,994...886,641 		JBrowse link
G Hmga2 high mobility group AT-hook 2 enables ISO (PMID:17078040) UniProt PMID:17078040 NCBI chrNW_004624802:2,337,344...2,468,757
Ensembl chrNW_004624802:2,337,464...2,467,990 		JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624745:24,659,391...24,665,874
Ensembl chrNW_004624745:24,659,334...24,665,221 		JBrowse link
G Hmgn2 high mobility group nucleosomal binding domain 2 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624764:10,477,276...10,480,980 JBrowse link
G Hmgn3 high mobility group nucleosomal binding domain 3 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624819:5,831,031...5,860,249
Ensembl chrNW_004624819:5,830,311...5,860,141 		JBrowse link
G LOC101698172 histone H3.3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624801:5,668,661...5,672,164 JBrowse link
G LOC101699418 histone H3.3 enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chrNW_004624807:194,372...203,205 JBrowse link
G LOC101700059 histone H1oo enables ISO (PMID:22868987) UniProt PMID:22868987 NCBI chrNW_004624872:533,877...539,770 JBrowse link
G LOC101701243 histone H2A.Z enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chrNW_004624830:7,238,897...7,240,566
Ensembl chrNW_004624830:7,238,929...7,240,563 		JBrowse link
G LOC101704911 recombination repair protein 1-like enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624859:252,734...260,277 JBrowse link
G LOC101706296 core histone macro-H2A.1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:11,650,067...11,714,399
Ensembl chrNW_004624733:11,650,537...11,715,999 		JBrowse link
G LOC101712045 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624880:2,510,753...2,512,039 JBrowse link
G LOC101712333 high mobility group nucleosome-binding domain-containing protein 3 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624814:9,437,476...9,437,829 JBrowse link
G LOC101712482 non-histone chromosomal protein HMG-14 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624836:2,459,602...2,459,930 JBrowse link
G LOC101717518 histone H1.0 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624752:10,103,866...10,105,983 JBrowse link
G LOC101719834 non-histone chromosomal protein HMG-17 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624759:2,335,123...2,335,529 JBrowse link
G LOC101726086 histone H1.0 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624737:3,363,234...3,366,140 JBrowse link
G LOC101726503 high mobility group nucleosome-binding domain-containing protein 4 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624756:332,782...340,670 JBrowse link
G LOC106007871 non-histone chromosomal protein HMG-14-like enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624832:4,392,102...4,393,632 JBrowse link
G Rcc1 regulator of chromosome condensation 1 enables ISO (PMID:17435751) UniProt PMID:17435751 NCBI chrNW_004624764:12,316,976...12,360,673
Ensembl chrNW_004624764:12,326,738...12,362,213 		JBrowse link
G Smarce1 SWI/SNF related BAF chromatin remodeling complex subunit E1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624795:2,712,524...2,730,028
Ensembl chrNW_004624795:2,714,525...2,729,961 		JBrowse link
G Vrk1 VRK serine/threonine kinase 1 enables ISO (PMID:35390161) UniProt PMID:35390161 NCBI chrNW_004624734:6,595,827...6,678,139
Ensembl chrNW_004624734:6,595,814...6,678,081 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 18442
    binding 16097
      protein-containing complex binding 1461
        nucleosome binding 51
          CENP-A containing nucleosome binding 0
          nucleosomal DNA binding 22
paths to the root