Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:nucleosome binding
go back to main search page
Accession:GO:0031491 term browser browse the term
Definition:Binding to a nucleosome, a complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
nucleosome binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARID1A AT-rich interaction domain 1A contributes_to
enables		 ISO
IEA		 (PMID:23129809) MGI
TreeGrafter		 PMID:23129809 GO_REF:0000118 NCBI chr20:105,981,549...106,066,093
Ensembl chr20:105,981,290...106,065,672 		JBrowse link
G ARID1B AT-rich interaction domain 1B enables IEA TreeGrafter GO_REF:0000118 Ensembl chr13:84,352,824...84,801,999 JBrowse link
G CABIN1 calcineurin binding protein 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr19:7,127,370...7,289,054
Ensembl chr19:7,127,401...7,289,050 		JBrowse link
G CGAS cyclic GMP-AMP synthase enables IEA Ensembl GO_REF:0000107 NCBI chr17:1,697,446...1,723,626
Ensembl chr17:1,697,775...1,723,472 		JBrowse link
G CHD1L chromodomain helicase DNA binding protein 1 like enables IEA Ensembl GO_REF:0000107
G DNTTIP1 deoxynucleotidyltransferase terminal interacting protein 1 enables IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:18,074,766...18,098,147
Ensembl chr 2:18,074,767...18,098,108 		JBrowse link
G EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit enables IEA Ensembl GO_REF:0000107 NCBI chr16:63,544,483...63,592,651
Ensembl chr16:63,558,551...63,587,501 		JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit enables IEA Ensembl GO_REF:0000107 NCBI chr21:117,380,518...117,515,224
Ensembl chr21:117,380,361...117,421,573 		JBrowse link
G GLYR1 glyoxylate reductase 1 homolog enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:4,473,222...4,518,150
Ensembl chr 5:4,475,227...4,518,071 		JBrowse link
G H1F0 H1 histone family member 0 enables IEA Ensembl GO_REF:0000107 NCBI chr19:20,505,629...20,507,973
Ensembl chr19:20,506,080...20,506,664 		JBrowse link
G HIRA histone cell cycle regulator enables IEA TreeGrafter GO_REF:0000118 NCBI chr19:6,324,050...6,424,999
Ensembl chr19:6,324,253...6,425,641 		JBrowse link
G HP1BP3 heterochromatin protein 1 binding protein 3 enables IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:111,766,259...111,815,233
Ensembl chr20:111,772,973...111,818,038 		JBrowse link
G L3MBTL1 L3MBTL histone methyl-lysine binding protein 1 enables ISO (PMID:17540172) UniProt PMID:17540172 NCBI chr 2:20,253,598...20,299,022 JBrowse link
G LOC103237988 protein AF-10 enables IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:21,338,274...21,548,789
Ensembl chr 9:21,339,177...21,549,208 		JBrowse link
G MLLT6 MLLT6, PHD finger containing enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:67,466,001...67,490,019
Ensembl chr16:67,465,913...67,490,251 		JBrowse link
G NAP1L4 nucleosome assembly protein 1 like 4 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:2,756,859...2,802,751
Ensembl chr 1:2,755,735...2,791,346 		JBrowse link
G NOC2L NOC2 like nucleolar associated transcriptional repressor enables IEA Ensembl GO_REF:0000107 NCBI chr20:130,473,526...130,488,570
Ensembl chr20:130,473,547...130,490,907 		JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 enables ISO (PMID:15607977), (PMID:31848352) UniProt PMID:15607977 PMID:31848352 NCBI chr25:3,350,798...3,405,040 JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 enables IEA Ensembl GO_REF:0000107 Ensembl chr25:3,350,821...3,388,826 JBrowse link
G PARP2 poly(ADP-ribose) polymerase 2 enables IEA Ensembl GO_REF:0000107 NCBI chr29:20,862,787...20,877,752
Ensembl chr29:20,863,380...20,877,644 		JBrowse link
G PWWP3A PWWP domain containing 3A, DNA repair factor enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:1,123,556...1,145,761
Ensembl chr 6:1,125,080...1,145,358 		JBrowse link
G RCC1 regulator of chromosome condensation 1 enables IEA Ensembl GO_REF:0000107 NCBI chr20:104,256,895...104,279,948
Ensembl chr20:104,257,877...104,278,458 		JBrowse link
G RNF168 ring finger protein 168 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr15:90,702,740...90,735,279
Ensembl chr15:90,702,765...90,737,687 		JBrowse link
G RNF169 ring finger protein 169 enables ISO (PMID:22742833) UniProt PMID:22742833 NCBI chr 1:65,990,538...66,080,163 JBrowse link
G RNF169 ring finger protein 169 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr 1:66,026,454...66,074,422 JBrowse link
G RNF4 ring finger protein 4 enables ISO PMID:11319220 UniProt PMID:11319220 RGD:8554033 NCBI chr27:46,245,786...46,290,671 JBrowse link
G SAP30L SAP30 like enables IEA Ensembl GO_REF:0000107 NCBI chr23:56,900,806...56,916,238
Ensembl chr23:56,900,843...56,916,259 		JBrowse link
G SIRT6 sirtuin 6 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:3,924,230...3,932,583
Ensembl chr 6:3,924,230...3,932,590 		JBrowse link
G SMARCA1 SNF2 related chromatin remodeling ATPase 1 enables IEA InterPro GO_REF:0000002 NCBI chr  X:104,690,937...104,768,326
Ensembl chr  X:104,690,689...104,768,298 		JBrowse link
G SMARCA5 SNF2 related chromatin remodeling ATPase 5 enables IEA InterPro GO_REF:0000002 NCBI chr 7:90,366,359...90,406,707
Ensembl chr 7:90,370,305...90,410,137 		JBrowse link
G SSRP1 structure specific recognition protein 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 1:15,907,874...15,918,376
Ensembl chr 1:15,908,495...15,918,596 		JBrowse link
G SUPT16H SPT16 homolog, facilitates chromatin remodeling subunit enables IEA TreeGrafter GO_REF:0000118 NCBI chr29:21,822,520...21,855,552
Ensembl chr29:21,822,393...21,855,923 		JBrowse link
G SUPT6H SPT6 homolog, histone chaperone and transcription elongation factor enables IEA TreeGrafter GO_REF:0000118 NCBI chr16:22,444,864...22,470,248 JBrowse link
nucleosomal DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H1-2 H1.2 linker histone, cluster member enables IEA TreeGrafter GO_REF:0000118 NCBI chr17:46,199,245...46,200,970
Ensembl chr17:46,199,304...46,199,942 		JBrowse link
G H1F0 H1 histone family member 0 enables IEA TreeGrafter GO_REF:0000118 NCBI chr19:20,505,629...20,507,973
Ensembl chr19:20,506,080...20,506,664 		JBrowse link
G H1FOO H1 histone family member O, oocyte specific enables ISO (PMID:22868987) UniProt PMID:22868987 NCBI chr22:51,497,111...51,506,007 JBrowse link
G H2AFY core histone macro-H2A.1 enables IEA Ensembl GO_REF:0000107 NCBI chr23:38,113,212...38,178,227
Ensembl chr23:38,113,195...38,168,382 		JBrowse link
G HMGA2 high mobility group AT-hook 2 enables ISO (PMID:17078040) UniProt PMID:17078040 NCBI chr11:61,509,114...61,655,633 JBrowse link
G HMGN1 high mobility group nucleosome binding domain 1 enables IEA InterPro GO_REF:0000002 Ensembl chr 2:83,297,315...83,303,581 JBrowse link
G HMGN3 high mobility group nucleosomal binding domain 3 enables IEA InterPro GO_REF:0000002 NCBI chr13:3,909,460...3,943,339
Ensembl chr13:3,909,430...3,942,394 		JBrowse link
G HMGN4 high mobility group nucleosomal binding domain 4 enables IEA InterPro GO_REF:0000002 NCBI chr17:45,667,759...45,676,476
Ensembl chr17:45,669,090...45,676,295 		JBrowse link
G HMGN5 high mobility group nucleosome binding domain 5 enables IEA InterPro GO_REF:0000002 NCBI chr  X:70,103,170...70,201,472
Ensembl chr  X:70,102,034...70,111,019 		JBrowse link
G LOC103215546 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like enables IEA TreeGrafter GO_REF:0000118 NCBI chr 2:53,170,987...53,172,360 JBrowse link
G LOC103220086 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002 NCBI chr14:36,307,595...36,308,999 JBrowse link
G LOC103230211 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002 NCBI chr25:23,472,174...23,472,904 JBrowse link
G LOC103231004 histone H3.3A enables IEA Ensembl GO_REF:0000107 NCBI chr25:3,696,153...3,704,886 JBrowse link
G LOC103234243 non-histone chromosomal protein HMG-17 enables IEA InterPro GO_REF:0000002 NCBI chr 6:18,565,341...18,598,274 JBrowse link
G LOC103234925 non-histone chromosomal protein HMG-17 enables IEA InterPro GO_REF:0000002 NCBI chr 6:40,146,192...40,147,361 JBrowse link
G LOC103236032 histone H2A.Z enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chr 7:48,079,894...48,082,147 JBrowse link
G LOC103236261 non-histone chromosomal protein HMG-17 enables IEA InterPro GO_REF:0000002 NCBI chr 7:80,967,135...80,968,366 JBrowse link
G LOC103243033 histone H3.3A enables IEA Ensembl GO_REF:0000107 NCBI chr16:45,903,252...45,905,605
Ensembl chr16:45,902,980...45,904,929 		JBrowse link
G LOC119620624 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002
G LOC119625179 histone H3.3A enables IEA Ensembl GO_REF:0000107
G LOC119625328 histone H3.3A enables IEA Ensembl GO_REF:0000107
G LOC119626586 non-histone chromosomal protein HMG-17 enables IEA InterPro GO_REF:0000002
G LOC119626591 non-histone chromosomal protein HMG-17 enables IEA InterPro GO_REF:0000002
G LOC119628071 histone H3.3A enables IEA Ensembl GO_REF:0000107
G LOC119628317 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002
G RCC1 regulator of chromosome condensation 1 enables IEA Ensembl GO_REF:0000107 NCBI chr20:104,256,895...104,279,948
Ensembl chr20:104,257,877...104,278,458 		JBrowse link
G SMARCE1 SWI/SNF related BAF chromatin remodeling complex subunit E1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr16:65,539,138...65,559,810
Ensembl chr16:65,541,513...65,561,401 		JBrowse link
G VRK1 VRK serine/threonine kinase 1 enables IEA Ensembl GO_REF:0000107 NCBI chr24:74,686,102...74,770,496
Ensembl chr24:74,686,111...74,770,874 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 19851
    binding 18015
      protein-containing complex binding 1523
        nucleosome binding 59
          CENP-A containing nucleosome binding 0
          nucleosomal DNA binding 28
paths to the root