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ONTOLOGY REPORT - ANNOTATIONS

Term:nucleosome binding
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Accession:GO:0031491 term browser browse the term
Definition:Binding to a nucleosome, a complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.


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nucleosome binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr6 actin related protein 6 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:24,150,250...24,171,057
Ensembl chr 7:24,150,250...24,171,067 		JBrowse link
G Arid1a AT-rich interaction domain 1A contributes_to IBA
ISO		 GO_REF:0000033
(PMID:23129809)		 GO_Central
RGD		 PMID:23129809 GO_REF:0000033 NCBI chr 5:145,908,173...145,981,552
Ensembl chr 5:145,908,181...145,985,564 		JBrowse link
G Arid1b AT-rich interaction domain 1B contributes_to IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:45,567,991...45,923,644
Ensembl chr 1:45,563,623...45,923,493 		JBrowse link
G Cabin1 calcineurin binding protein 1 contributes_to IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:12,893,314...13,015,357
Ensembl chr20:12,893,358...13,015,357 		JBrowse link
G Cgas cyclic GMP-AMP synthase enables ISO (PMID:32911482), (PMID:32912999), (PMID:33051594)
(PMID:32911480), (PMID:32911481), (PMID:32913000)		 RGD PMID:32911480 PMID:32911481 PMID:32911482 PMID:32912999 PMID:32913000 More... NCBI chr 8:79,292,282...79,306,998
Ensembl chr 8:79,294,511...79,305,496 		JBrowse link
G Chd1l chromodomain helicase DNA binding protein 1-like enables ISO (PMID:33357431), (PMID:34210977), (PMID:34486521) RGD PMID:33357431 PMID:34210977 PMID:34486521 NCBI chr 2:185,138,526...185,217,498
Ensembl chr 2:185,139,308...185,217,595 		JBrowse link
G Dnttip1 deoxynucleotidyltransferase, terminal, interacting protein 1 enables ISO
IBA
IEA
ISS		 (PMID:25653165)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl
UniProt		 PMID:25653165 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:153,481,718...153,505,403
Ensembl chr 3:153,481,705...153,505,759 		JBrowse link
G Eed embryonic ectoderm development contributes_to IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:143,867,875...143,895,008
Ensembl chr 1:143,867,875...143,894,974 		JBrowse link
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit enables ISO (PMID:33514705) RGD PMID:33514705 NCBI chr10:86,126,023...86,162,001
Ensembl chr10:86,126,015...86,161,921 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit enables ISO (PMID:33479123) RGD PMID:33479123 NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362 		JBrowse link
G Glyr1 glyoxylate reductase 1 homolog enables ISO
IBA
IEA		 (PMID:29759984)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:29759984 GO_REF:0000033 GO_REF:0000107 NCBI chr10:10,532,036...10,567,639
Ensembl chr10:10,532,154...10,567,637 		JBrowse link
G H1f0 H1.0 linker histone enables ISO UniProtKB:P04908|UniProtKB:P06899|UniProtKB:P62805|UniProtKB:P68431 (PMID:35377618) RGD PMID:35377618 NCBI chr 7:110,592,834...110,594,694
Ensembl chr 7:110,592,208...110,594,694 		JBrowse link
G Hira histone cell cycle regulator contributes_to IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:82,024,469...82,133,212
Ensembl chr11:82,024,469...82,133,529 		JBrowse link
G Hp1bp3 heterochromatin protein 1, binding protein 3 enables ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000107
(PMID:20042602)		 UniProt
GO_Central
Ensembl
RGD		 PMID:20042602 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:150,435,781...150,463,004
Ensembl chr 5:150,433,740...150,463,000 		JBrowse link
G L3mbtl1 L3MBTL histone methyl-lysine binding protein 1 enables ISO (PMID:17540172) RGD PMID:17540172 NCBI chr 3:151,597,903...151,633,657
Ensembl chr 3:151,602,980...151,631,233 		JBrowse link
G LOC102557137 E3 ubiquitin-protein ligase RNF168-like enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:40,065,873...40,067,029
Ensembl chr  X:40,065,873...40,067,207 		JBrowse link
G LOC120097928 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5-like enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:58,274,295...58,278,695
Ensembl chr17:58,274,519...58,277,290 		JBrowse link
G Mllt10 MLLT10, histone lysine methyltransferase DOT1L cofactor enables ISO
IBA		 (PMID:26439302)
GO_REF:0000033		 RGD
GO_Central		 PMID:26439302 GO_REF:0000033 NCBI chr17:80,821,870...80,949,349
Ensembl chr17:80,822,556...80,949,345 		JBrowse link
G Mllt6 MLLT6, PHD finger containing enables ISO
IBA		 (PMID:26439302)
GO_REF:0000033		 RGD
GO_Central		 PMID:26439302 GO_REF:0000033 NCBI chr10:82,657,258...82,678,899
Ensembl chr10:82,656,872...82,676,073 		JBrowse link
G Nap1l4 nucleosome assembly protein 1-like 4 enables ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:9325046)		 UniProt
Ensembl
RGD		 PMID:9325046 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:198,709,697...198,746,093
Ensembl chr 1:198,709,701...198,746,020 		JBrowse link
G Noc2l NOC2-like nucleolar associated transcriptional repressor enables ISO (PMID:16322561) RGD PMID:16322561 NCBI chr 5:166,820,150...166,831,949
Ensembl chr 5:166,820,161...166,831,949 		JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 enables ISO
ISS		 (PMID:15607977), (PMID:31848352)
GO_REF:0000024		 RGD
UniProt		 PMID:15607977 PMID:31848352 GO_REF:0000024 NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404 		JBrowse link
G Parp2 poly (ADP-ribose) polymerase 2 enables ISO (PMID:32939087) RGD PMID:32939087 NCBI chr15:24,034,069...24,044,340
Ensembl chr15:24,034,106...24,044,338 		JBrowse link
G Pwwp3a PWWP domain containing 3A, DNA repair factor enables ISO
IBA
IEA
ISS		 (PMID:20347427)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl
UniProt		 PMID:20347427 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:9,465,180...9,482,053
Ensembl chr 7:9,465,195...9,481,966 		JBrowse link
G Rcc1 regulator of chromosome condensation 1 enables ISO (PMID:20347844) RGD PMID:20347844 NCBI chr 5:144,526,025...144,544,445
Ensembl chr 5:144,526,025...144,544,577 		JBrowse link
G Rnf168 ring finger protein 168 enables ISO
IBA
IEA		 (PMID:22742833)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:22742833 GO_REF:0000033 GO_REF:0000107 NCBI chr11:68,486,313...68,508,296
Ensembl chr11:68,486,321...68,508,277 		JBrowse link
G Rnf169 ring finger protein 169 enables ISO
IBA		 (PMID:22742833)
GO_REF:0000033		 RGD
GO_Central		 PMID:22742833 GO_REF:0000033 NCBI chr 1:154,250,462...154,311,867
Ensembl chr 1:154,254,473...154,311,653 		JBrowse link
G Rnf4 ring finger protein 4 enables IDA PMID:11319220 UniProt PMID:11319220 RGD:8554033 NCBI chr14:76,401,292...76,423,270
Ensembl chr14:76,401,299...76,422,566 		JBrowse link
G Sap30l SAP30-like enables ISO (PMID:19015240) RGD PMID:19015240 NCBI chr10:41,979,730...41,992,307
Ensembl chr10:41,979,687...41,987,658 		JBrowse link
G Sirt6 sirtuin 6 enables ISO (PMID:23892288), (PMID:33067423) RGD PMID:23892288 PMID:33067423 NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914 		JBrowse link
G Smarca1 SNF2 related chromatin remodeling ATPase 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:126,980,201...127,066,385
Ensembl chr  X:126,994,947...127,066,347 		JBrowse link
G Smarca5 SNF2 related chromatin remodeling ATPase 5 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594 		JBrowse link
G Ssrp1 structure specific recognition protein 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:70,124,371...70,134,481
Ensembl chr 3:70,118,655...70,134,482 		JBrowse link
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:24,867,697...24,904,818
Ensembl chr15:24,866,489...24,904,846 		JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:63,103,920...63,140,780
Ensembl chr10:63,103,921...63,140,780 		JBrowse link
G Znhit1 zinc finger, HIT-type containing 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:19,686,606...19,692,880
Ensembl chr12:19,686,148...19,692,880 		JBrowse link
nucleosomal DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07053402.1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:99,990,743...99,991,003 JBrowse link
G AABR07053884.1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:126,570,653...126,570,904 JBrowse link
G ENSRNOG00000064141 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr15:7,467,152...7,470,303 JBrowse link
G ENSRNOG00000064384 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 8:6,857,829...6,858,796 JBrowse link
G ENSRNOG00000068549 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr15:74,620,797...74,621,228 JBrowse link
G H1f0 H1.0 linker histone enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:110,592,834...110,594,694
Ensembl chr 7:110,592,208...110,594,694 		JBrowse link
G H1f1 H1.1 linker histone, cluster member enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,366,268...41,367,011
Ensembl chr17:41,366,268...41,367,011 		JBrowse link
G H1f10 H1.10 linker histone enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:120,440,515...120,441,578
Ensembl chr 4:120,440,870...120,441,448 		JBrowse link
G H1f2 H1.2 linker histone, cluster member enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,391,106...41,392,597
Ensembl chr17:41,388,477...41,392,635 		JBrowse link
G H1f4 H1.4 linker histone, cluster member enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,486,574...41,487,355
Ensembl chr17:41,486,560...41,487,403 		JBrowse link
G H1f5 H1.5 linker histone, cluster member enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:42,726,132...42,727,162
Ensembl chr17:42,726,127...42,769,160 		JBrowse link
G H1f6 H1.6 linker histone, cluster member enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,427,365...41,428,109
Ensembl chr17:41,427,323...41,428,119 		JBrowse link
G H1f7 H1.7 linker histone enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:129,408,521...129,409,888
Ensembl chr 7:129,408,359...129,409,930 		JBrowse link
G H1f8 H1.8 linker histone enables ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:22868987)		 CAFA
GO_Central
RGD		 PMID:22868987 GO_REF:0000024 GO_REF:0000033 NCBI chr 4:148,993,133...148,998,254
Ensembl chr 4:148,993,133...148,998,254 		JBrowse link
G H2az1 H2A.Z variant histone 1 enables ISO (PMID:19633671) RGD PMID:19633671 NCBI chr 2:226,355,668...226,357,984
Ensembl chr 2:226,355,708...226,358,485 		JBrowse link
G H3cl H3 clustered histone like enables ISO (PMID:27016736) RGD PMID:27016736 NCBI chr17:41,372,194...41,378,877 JBrowse link
G H3f3a H3.3 histone A enables ISO (PMID:19633671) RGD PMID:19633671 NCBI chr13:92,533,289...92,544,902
Ensembl chr13:92,533,298...92,544,908 		JBrowse link
G H3f3b H3.3 histone B enables ISO (PMID:19633671) RGD PMID:19633671 NCBI chr10:101,256,484...101,258,716
Ensembl chr10:101,256,480...101,258,709
Ensembl chr13:101,256,480...101,258,709 		JBrowse link
G H4f3 H1.3 linker histone, cluster member enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,551,524...41,552,303
Ensembl chr17:41,529,667...41,552,334 		JBrowse link
G Hils1 histone linker H1 domain, spermatid-specific 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:79,913,525...79,914,321
Ensembl chr10:79,913,480...79,914,321 		JBrowse link
G Hmga2 high mobility group AT-hook 2 enables ISO
ISS		 (PMID:17078040)
GO_REF:0000024		 RGD
UniProt		 PMID:17078040 GO_REF:0000024 NCBI chr 7:55,877,145...55,998,813
Ensembl chr 7:55,880,112...55,994,784 		JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:35,422,328...35,428,247
Ensembl chr11:35,422,328...35,428,254 		JBrowse link
G Hmgn1-ps6 high mobility group nucleosome binding domain 1, pseudogene 6 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr14:60,030,310...60,030,603
Ensembl chr14:60,030,448...60,030,603
Ensembl chr14:60,030,448...60,030,603 		JBrowse link
G Hmgn1l1 high mobility group nucleosomal binding domain 1 like 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:38,604,856...38,606,026
Ensembl chr 4:38,605,721...38,606,011 		JBrowse link
G Hmgn2 high mobility group nucleosomal binding domain 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:146,192,126...146,195,580
Ensembl chr 5:146,192,126...146,195,521
Ensembl chr16:146,192,126...146,195,521 		JBrowse link
G Hmgn2-ps3 high mobility group nucleosomal binding domain 2, pseudogene 3 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:99,990,743...99,991,003
Ensembl chr 3:99,990,743...99,991,003 		JBrowse link
G Hmgn2-ps4 high mobility group nucleosomal binding domain 2, pseudogene 4 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:30,633,287...30,634,512
Ensembl chr16:30,622,845...30,634,512 		JBrowse link
G Hmgn2l2 high mobility group nucleosomal binding domain 2 like 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:57,618,690...57,618,983
Ensembl chr 2:57,618,690...57,618,953 		JBrowse link
G Hmgn2l3 high mobility group nucleosomal binding domain 2 like 3 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:83,520,046...83,520,312
Ensembl chr 7:83,520,046...83,520,312 		JBrowse link
G Hmgn3 high mobility group nucleosomal binding domain 3 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:84,022,493...84,059,329
Ensembl chr 8:84,022,495...84,062,976 		JBrowse link
G Hmgn5 high mobility group nucleosome binding domain 5 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:74,085,871...74,094,488
Ensembl chr  X:74,085,875...74,094,441
Ensembl chr 1:74,085,875...74,094,441 		JBrowse link
G Hmgn5b high mobility group nucleosome binding domain 5B enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:117,222,188...117,224,158
Ensembl chr 1:117,222,298...117,223,587
Ensembl chr  X:117,222,298...117,223,587 		JBrowse link
G LOC120093100 non-histone chromosomal protein HMG-14-like enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:44,016,858...44,017,148
Ensembl chr18:44,016,845...44,017,133 		JBrowse link
G LOC120093784 non-histone chromosomal protein HMG-14-like enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:15,148,859...15,151,046 JBrowse link
G Macroh2a1 macroH2A.1 histone enables ISO (PMID:20008927)
(PMID:18936163)		 RGD PMID:18936163 PMID:20008927 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072 		JBrowse link
G Rcc1 regulator of chromosome condensation 1 enables ISO (PMID:17435751) RGD PMID:17435751 NCBI chr 5:144,526,025...144,544,445
Ensembl chr 5:144,526,025...144,544,577 		JBrowse link
G Vrk1 VRK serine/threonine kinase 1 enables ISO (PMID:35390161) RGD PMID:35390161 NCBI chr 6:124,914,770...124,981,508
Ensembl chr 6:124,914,855...124,981,436 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 21087
    binding 18096
      protein-containing complex binding 1643
        nucleosome binding 71
          CENP-A containing nucleosome binding 0
          nucleosomal DNA binding 37
paths to the root