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ONTOLOGY REPORT - ANNOTATIONS

Term:chromatin DNA binding
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Accession:GO:0031490 term browser browse the term
Definition:Binding to DNA that is assembled into chromatin.

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chromatin DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn4 actinin alpha 4 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936801:1,333,077...1,402,885
Ensembl chrNW_004936801:1,333,077...1,404,054 		JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936877:666,545...669,351
Ensembl chrNW_004936877:666,523...669,338 		JBrowse link
G Atoh1 atonal bHLH transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936687:1,435,977...1,437,138
Ensembl chrNW_004936687:1,436,009...1,437,067 		JBrowse link
G Atrx ATRX chromatin remodeler enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936683:2,496,307...2,718,539
Ensembl chrNW_004936683:2,495,959...2,718,620 		JBrowse link
G Bap1 BRCA1 associated deubiquitinase 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:3,239,009...3,247,806
Ensembl chrNW_004936473:3,239,010...3,247,806 		JBrowse link
G Bcl6 BCL6 transcription repressor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936578:2,371,976...2,395,034
Ensembl chrNW_004936578:2,371,945...2,395,071 		JBrowse link
G Cebpa CCAAT enhancer binding protein alpha enables ISO (PMID:25921091) MGI PMID:25921091 NCBI chrNW_004936570:2,513,561...2,516,213 JBrowse link
G Clock clock circadian regulator enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936482:17,789,834...17,900,371
Ensembl chrNW_004936482:17,794,134...17,845,303 		JBrowse link
G Crebbp CREB binding protein enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936694:552,447...663,237
Ensembl chrNW_004936694:553,753...663,617 		JBrowse link
G Ddx17 DEAD-box helicase 17 enables ISO (PMID:29431742) MGI PMID:29431742 NCBI chrNW_004936492:2,806,630...2,826,071
Ensembl chrNW_004936492:2,806,516...2,827,181 		JBrowse link
G Dhx9 DExH-box helicase 9 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:6,896,487...6,934,938
Ensembl chrNW_004936481:6,896,359...6,935,623 		JBrowse link
G Eomes eomesodermin enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:18,825,969...18,833,179
Ensembl chrNW_004936473:18,825,942...18,833,179 		JBrowse link
G Ep300 E1A binding protein p300 enables ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:20702579 GO_REF:0000107 GO_REF:0000118 RGD:5128544 NCBI chrNW_004936492:696,982...778,132
Ensembl chrNW_004936492:696,960...778,138 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936527:5,024,077...5,069,152
Ensembl chrNW_004936527:5,024,068...5,063,939 		JBrowse link
G Foxc2 forkhead box C2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936641:2,236,224...2,238,501
Ensembl chrNW_004936641:2,236,873...2,238,375 		JBrowse link
G Foxo1 forkhead box O1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936565:5,210,014...5,299,213
Ensembl chrNW_004936565:5,210,014...5,302,436 		JBrowse link
G Foxo3 forkhead box O3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936564:4,788,036...4,907,600
Ensembl chrNW_004936564:4,787,992...4,903,837 		JBrowse link
G Gata1 GATA binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936721:742,862...750,843
Ensembl chrNW_004936721:742,862...750,768 		JBrowse link
G Gli2 GLI family zinc finger 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:49,616,552...49,788,760
Ensembl chrNW_004936469:49,617,095...49,673,213 		JBrowse link
G Grhl1 grainyhead like transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936532:6,199,525...6,247,282
Ensembl chrNW_004936532:6,199,453...6,247,295 		JBrowse link
G Grhl2 grainyhead like transcription factor 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:41,856,683...41,961,666
Ensembl chrNW_004936470:41,859,035...42,002,844 		JBrowse link
G Grhl3 grainyhead like transcription factor 3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:9,321,754...9,354,486
Ensembl chrNW_004936474:9,332,444...9,353,893 		JBrowse link
G H1-1 H1.1 linker histone, cluster member enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936671:1,876,497...1,878,006
Ensembl chrNW_004936671:1,877,303...1,877,959 		JBrowse link
G H1-2 H1.2 linker histone, cluster member enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936671:1,907,356...1,911,821
Ensembl chrNW_004936671:1,907,321...1,911,851 		JBrowse link
G H1-5 H1.5 linker histone, cluster member enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936671:3,163,792...3,164,532
Ensembl chrNW_004936671:3,163,825...3,164,505 		JBrowse link
G Hcfc1 host cell factor C1 enables ISO (PMID:22878500) MGI PMID:22878500 NCBI chrNW_004936809:827,008...853,689
Ensembl chrNW_004936809:827,031...853,644 		JBrowse link
G Hdac2 histone deacetylase 2 enables ISO (PMID:18458156) MGI PMID:18458156 NCBI chrNW_004936679:2,448,676...2,474,641
Ensembl chrNW_004936679:2,448,390...2,474,641 		JBrowse link
G Hdac3 histone deacetylase 3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936504:12,530,546...12,546,556
Ensembl chrNW_004936504:12,530,528...12,546,556 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U enables ISO (PMID:11003645) UniProt PMID:11003645 NCBI chrNW_004936526:6,014,745...6,022,213 JBrowse link
G Hr HR lysine demethylase and nuclear receptor corepressor enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936555:5,936,431...5,954,852
Ensembl chrNW_004936555:5,936,220...5,954,974 		JBrowse link
G Hsf1 heat shock transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:7,927,734...7,950,805
Ensembl chrNW_004936470:7,928,095...7,933,337 		JBrowse link
G Insm1 INSM transcriptional repressor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:66,889...69,792
Ensembl chrNW_004936485:68,004...69,596 		JBrowse link
G Jmjd1c jumonji domain containing 1C enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936753:1,413,935...1,645,974
Ensembl chrNW_004936753:1,414,240...1,645,161 		JBrowse link
G Kdm3a lysine demethylase 3A enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936712:1,053,210...1,097,845
Ensembl chrNW_004936712:1,053,210...1,096,961 		JBrowse link
G Kdm3b lysine demethylase 3B enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936531:7,517,810...7,600,319
Ensembl chrNW_004936531:7,516,125...7,600,347 		JBrowse link
G Kdm5a lysine demethylase 5A enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936606:486,424...570,546
Ensembl chrNW_004936606:485,655...570,739 		JBrowse link
G Kdm6a lysine demethylase 6A enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936502:10,980,303...11,196,711
Ensembl chrNW_004936502:10,980,118...11,196,163 		JBrowse link
G Kdm6b lysine demethylase 6B enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936595:1,077,318...1,099,082
Ensembl chrNW_004936595:1,089,544...1,097,595 		JBrowse link
G Klf4 KLF transcription factor 4 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936559:5,105,456...5,109,970
Ensembl chrNW_004936559:5,105,463...5,109,970 		JBrowse link
G Lemd2 LEM domain nuclear envelope protein 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936476:25,170,954...25,188,298
Ensembl chrNW_004936476:25,170,973...25,186,965 		JBrowse link
G Lemd3 LEM domain containing 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936545:3,385,821...3,453,861
Ensembl chrNW_004936545:3,385,062...3,454,243 		JBrowse link
G LOC101956559 core histone macro-H2A.2 enables IEA UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936521:8,474,408...8,509,269
Ensembl chrNW_004936521:8,473,794...8,509,268 		JBrowse link
G LOC101967900 lysine-specific demethylase 4D enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936674:53,200...73,042 JBrowse link
G LOC101970440 histone H1.0 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:3,314,991...3,315,974
Ensembl chrNW_004936492:3,315,048...3,315,632 		JBrowse link
G LOC101971629 core histone macro-H2A.1 enables IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936597:2,496,489...2,556,352
Ensembl chrNW_004936597:2,495,862...2,556,603 		JBrowse link
G LOC101972263 WW domain-binding protein 2-like enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936748:428,775...434,392 JBrowse link
G LOC101974663 histone H2A.Z enables ISO (PMID:19834540), (PMID:23637611) UniProt PMID:19834540 PMID:23637611 NCBI chrNW_004936520:3,059,623...3,061,941 JBrowse link
G Mecp2 methyl-CpG binding protein 2 ISO RGD PMID:9038338 RGD:1601325 NCBI chrNW_004936809:902,938...967,771
Ensembl chrNW_004936809:911,764...966,839 		JBrowse link
G Med1 mediator complex subunit 1 ISO RGD PMID:20702579 RGD:5128544 NCBI chrNW_004936490:14,625,201...14,663,184
Ensembl chrNW_004936490:14,625,897...14,657,802 		JBrowse link
G Myod1 myogenic differentiation 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936528:1,407,187...1,409,683
Ensembl chrNW_004936528:1,407,661...1,409,573 		JBrowse link
G Myog myogenin enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936567:1,507,042...1,509,814
Ensembl chrNW_004936567:1,507,042...1,509,815 		JBrowse link
G Neurog3 neurogenin 3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:8,932,998...8,933,645
Ensembl chrNW_004936521:8,932,998...8,933,645 		JBrowse link
G Nkap NFKB activating protein enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936479:10,024,674...10,041,738
Ensembl chrNW_004936479:10,024,705...10,041,590 		JBrowse link
G Notch1 notch receptor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936669:1,292,016...1,334,061
Ensembl chrNW_004936669:1,292,088...1,332,428 		JBrowse link
G Nr1h2 nuclear receptor subfamily 1 group H member 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936889:223,137...229,968
Ensembl chrNW_004936889:223,101...229,990 		JBrowse link
G Nr1h3 nuclear receptor subfamily 1 group H member 3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936562:1,937,665...1,946,680
Ensembl chrNW_004936562:1,937,667...1,946,669 		JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936762:99,335...137,833
Ensembl chrNW_004936762:99,293...137,874 		JBrowse link
G Pax6 paired box 6 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936533:5,952,529...5,980,889
Ensembl chrNW_004936533:5,957,971...5,982,075 		JBrowse link
G Per1 period circadian regulator 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:1,366,883...1,382,138
Ensembl chrNW_004936595:1,366,875...1,382,170 		JBrowse link
G Pitx2 paired like homeodomain 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936563:1,713,294...1,732,431 JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936559:220,941...222,783 JBrowse link
G Pou5f1 POU class 5 homeobox 1 enables ISO (PMID:24268575) MGI PMID:24268575 NCBI chrNW_004936837:827,568...838,933 JBrowse link
G Ppargc1a PPARG coactivator 1 alpha enables IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chrNW_004936477:4,881,230...5,488,208
Ensembl chrNW_004936477:5,199,881...5,488,226 		JBrowse link
G Prdm14 PR/SET domain 14 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936496:14,789,443...14,820,967
Ensembl chrNW_004936496:14,806,928...14,820,967 		JBrowse link
G Rara retinoic acid receptor alpha enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:15,376,217...15,420,638
Ensembl chrNW_004936490:15,376,205...15,421,611 		JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:3,800,142...3,810,583
Ensembl chrNW_004936599:3,801,636...3,809,813 		JBrowse link
G Runx2 RUNX family transcription factor 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:14,695,965...14,818,246
Ensembl chrNW_004936476:14,695,965...14,905,157 		JBrowse link
G Ruvbl2 RuvB like AAA ATPase 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:2,995,212...3,010,563
Ensembl chrNW_004936664:2,995,213...3,010,853 		JBrowse link
G Rxra retinoid X receptor alpha enables ISO (PMID:17952069), (PMID:29431742) MGI PMID:17952069 PMID:29431742 NCBI chrNW_004936669:2,735,111...2,763,060
Ensembl chrNW_004936669:2,738,448...2,763,070 		JBrowse link
G Rxrb retinoid X receptor beta enables ISO (PMID:29431742) MGI PMID:29431742 NCBI chrNW_004936476:25,655,164...25,662,369
Ensembl chrNW_004936476:25,655,209...25,662,416 		JBrowse link
G Sbno1 strawberry notch homolog 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936558:1,383,652...1,442,298
Ensembl chrNW_004936558:1,393,799...1,442,298 		JBrowse link
G Sbno2 strawberry notch homolog 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936588:509,244...556,424
Ensembl chrNW_004936588:505,948...541,831 		JBrowse link
G Sirt6 sirtuin 6 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,387,162...2,394,066
Ensembl chrNW_004936588:2,386,977...2,394,096 		JBrowse link
G Smad3 SMAD family member 3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:27,080,662...27,185,861
Ensembl chrNW_004936471:27,080,575...27,189,793 		JBrowse link
G Sox2 SRY-box transcription factor 2 enables ISO (PMID:24268575) MGI PMID:24268575 NCBI chrNW_004936566:1,630,698...1,632,607
Ensembl chrNW_004936566:1,631,822...1,632,613 		JBrowse link
G Srf serum response factor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:16,779,941...16,789,499
Ensembl chrNW_004936476:16,782,233...16,789,130 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:17,119,189...17,178,402
Ensembl chrNW_004936490:17,117,290...17,178,402 		JBrowse link
G Suz12 SUZ12 polycomb repressive complex 2 subunit enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936538:2,921,987...2,971,521
Ensembl chrNW_004936538:2,921,719...2,971,552 		JBrowse link
G Tbr1 T-box brain transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:17,481,049...17,489,535
Ensembl chrNW_004936469:17,479,842...17,490,710 		JBrowse link
G Thra thyroid hormone receptor alpha enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:15,188,341...15,206,032
Ensembl chrNW_004936490:15,193,150...15,206,784 		JBrowse link
G Thrb thyroid hormone receptor beta enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:15,766,214...15,986,389
Ensembl chrNW_004936473:15,770,146...15,986,561 		JBrowse link
G Top1 DNA topoisomerase I ISO RGD PMID:1332866 RGD:1580856 NCBI chrNW_004936561:641,451...723,323
Ensembl chrNW_004936561:641,423...723,518 		JBrowse link
G Tox thymocyte selection associated high mobility group box enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936496:13,847,210...14,146,110
Ensembl chrNW_004936496:13,847,210...14,147,886 		JBrowse link
G Tox2 TOX high mobility group box family member 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936530:2,646,783...2,774,162
Ensembl chrNW_004936530:2,646,774...2,727,618 		JBrowse link
G Tox3 TOX high mobility group box family member 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936475:5,283,615...5,388,104
Ensembl chrNW_004936475:5,283,622...5,388,067 		JBrowse link
G Tox4 TOX high mobility group box family member 4 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936880:628,316...646,006
Ensembl chrNW_004936880:627,576...646,006 		JBrowse link
G Vax1 ventral anterior homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:6,972,972...6,978,544
Ensembl chrNW_004936486:6,974,662...6,978,542 		JBrowse link
G Vax2 ventral anterior homeobox 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:15,079,446...15,110,238
Ensembl chrNW_004936491:15,078,598...15,111,252 		JBrowse link
G Wbp2 WW domain binding protein 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936594:1,023,085...1,031,571 JBrowse link
G Xbp1 X-box binding protein 1 enables ISO (PMID:25280941) UniProt PMID:25280941 NCBI chrNW_004936657:2,891,171...2,895,409
Ensembl chrNW_004936657:2,891,907...2,896,174 		JBrowse link
G Zic2 Zic family member 2 enables ISO (PMID:20676059) UniProt PMID:20676059 NCBI chrNW_004936472:10,599,717...10,605,187
Ensembl chrNW_004936472:10,602,102...10,605,191 		JBrowse link
chromatin insulator sequence binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctcf CCCTC-binding factor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:17,987,137...18,031,733
Ensembl chrNW_004936475:17,987,156...18,031,760 		JBrowse link
chromatin loop anchoring activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctcf CCCTC-binding factor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:17,987,137...18,031,733
Ensembl chrNW_004936475:17,987,156...18,031,760 		JBrowse link
nucleosomal DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmga2 high mobility group AT-hook 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:3,944,419...3,958,289
Ensembl chrNW_004936545:3,944,419...4,064,193 		JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936500:3,845,320...3,852,000
Ensembl chrNW_004936500:3,847,517...3,852,039 		JBrowse link
G Hmgn3 high mobility group nucleosomal binding domain 3 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936510:10,923,014...10,954,354
Ensembl chrNW_004936510:10,923,009...10,954,354 		JBrowse link
G Hmgn5 high mobility group nucleosome binding domain 5 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936547:2,607,491...2,614,037 JBrowse link
G LOC101955795 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936566:2,434,081...2,434,350 JBrowse link
G LOC101956023 uncharacterized LOC101956023 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936474:10,951,065...10,952,654
Ensembl chrNW_004936474:10,951,040...10,952,622 		JBrowse link
G LOC101956464 non-histone chromosomal protein HMG-17 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936542:8,395,521...8,395,897 JBrowse link
G LOC101956825 non-histone chromosomal protein HMG-17 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936487:9,155,533...9,156,763 JBrowse link
G LOC101958619 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936471:36,589,205...36,589,581 JBrowse link
G LOC101963041 histone H3.3A enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chrNW_004936526:2,835,002...2,842,328 JBrowse link
G LOC101963257 histone H3.3A enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chrNW_004936594:959,493...961,703
Ensembl chrNW_004936594:958,049...961,708 		JBrowse link
G LOC101965662 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936626:2,238,897...2,240,015 JBrowse link
G LOC101966029 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936523:2,611,759...2,612,147 JBrowse link
G LOC101966642 non-histone chromosomal protein HMG-17-like enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936622:837,413...838,563 JBrowse link
G LOC101970440 histone H1.0 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936492:3,314,991...3,315,974
Ensembl chrNW_004936492:3,315,048...3,315,632 		JBrowse link
G LOC101971055 histone H1.8 enables ISO (PMID:22868987) UniProt PMID:22868987 NCBI chrNW_004936602:885,478...890,014 JBrowse link
G LOC101971629 core histone macro-H2A.1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936597:2,496,489...2,556,352
Ensembl chrNW_004936597:2,495,862...2,556,603 		JBrowse link
G LOC101974663 histone H2A.Z enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chrNW_004936520:3,059,623...3,061,941 JBrowse link
G Rcc1 regulator of chromosome condensation 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:12,635,175...12,646,907
Ensembl chrNW_004936474:12,635,175...12,647,231 		JBrowse link
G Smarce1 SWI/SNF related BAF chromatin remodeling complex subunit E1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936490:15,638,546...15,659,372
Ensembl chrNW_004936490:15,638,526...15,659,706 		JBrowse link
G Vrk1 VRK serine/threonine kinase 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936604:1,011,048...1,097,388
Ensembl chrNW_004936604:1,011,052...1,097,403 		JBrowse link
promoter-enhancer loop anchoring activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahdc1 AT-hook DNA binding motif containing 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:11,824,692...11,846,355
Ensembl chrNW_004936474:11,824,697...11,876,817 		JBrowse link
G Msl2 MSL complex subunit 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:9,035,198...9,068,567
Ensembl chrNW_004936529:9,033,895...9,068,567 		JBrowse link
G Pcbp2 poly(rC) binding protein 2 enables ISO (PMID:31361039) FlyBase PMID:31361039 NCBI chrNW_004936512:10,732,129...10,754,885
Ensembl chrNW_004936512:10,732,151...10,756,912 		JBrowse link
G Ruvbl2 RuvB like AAA ATPase 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:2,995,212...3,010,563
Ensembl chrNW_004936664:2,995,213...3,010,853 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 18185
    binding 16304
      chromatin binding 641
        chromatin DNA binding 113
          chromatin insulator sequence binding 1
          chromatin loop anchoring activity + 5
          nucleosomal DNA binding 21
Path 2
Term Annotations click to browse term
  molecular_function 18185
    binding 16304
      nucleic acid binding 4039
        DNA binding 1942
          chromatin DNA binding 113
            chromatin insulator sequence binding 1
            chromatin loop anchoring activity + 5
            nucleosomal DNA binding 21
paths to the root